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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 497, 578 |
| AciI | CCGC | 2 cut(s) | 250, 501 |
| AclWI | GGATC | 1 cut(s) | 440 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AcyI | GRCGYC | 1 cut(s) | 579 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 523, 527 |
| AgsI | TTSAA | 2 cut(s) | 185, 265 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 2 cut(s) | 18, 583 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 4 cut(s) | 44, 50, 451, 461 |
| AluI | AGCT | 4 cut(s) | 44, 50, 451, 461 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AlwI | GGATC | 1 cut(s) | 440 |
| Ama87I | CYCGRG | 2 cut(s) | 8, 131 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspA2I | CCTAGG | 1 cut(s) | 521 |
| AspLEI | GCGC | 1 cut(s) | 581 |
| AsuHPI | GGTGA | 3 cut(s) | 584, 592, 599 |
| AvaI | CYCGRG | 2 cut(s) | 8, 131 |
| AvrII | CCTAGG | 1 cut(s) | 521 |
| BanI | GGYRCC | 2 cut(s) | 497, 578 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 7 cut(s) | 104, 385, 386, 546, 552, 569, 573 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciT130I | CCWGG | 2 cut(s) | 20, 585 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 3 cut(s) | 15, 227, 522 |
| BfoI | RGCGCY | 1 cut(s) | 582 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlnI | CCTAGG | 1 cut(s) | 521 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 2 cut(s) | 20, 585 |
| BmeT110I | CYCGRG | 2 cut(s) | 8, 131 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 2 cut(s) | 499, 580 |
| BmrFI | CCNGG | 2 cut(s) | 20, 585 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 2 cut(s) | 30, 617 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaHI | GRCGYC | 1 cut(s) | 579 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 4 cut(s) | 493, 521, 552, 583 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 523, 527 |
| BseBI | CCWGG | 2 cut(s) | 20, 585 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 4 cut(s) | 493, 521, 552, 583 |
| BseGI | GGATG | 2 cut(s) | 99, 127 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 523, 527 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BsgI | GTGCAG | 1 cut(s) | 552 |
| BshNI | GGYRCC | 2 cut(s) | 497, 578 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 2 cut(s) | 8, 131 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 523, 527 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 2 cut(s) | 8, 131 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp143I | GATC | 2 cut(s) | 333, 432 |
| Bsp19I | CCATGG | 1 cut(s) | 552 |
| BspACI | CCGC | 2 cut(s) | 250, 501 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 2 cut(s) | 499, 580 |
| BspPI | GGATC | 1 cut(s) | 440 |
| BspT107I | GGYRCC | 2 cut(s) | 497, 578 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BssECI | CCNNGG | 4 cut(s) | 493, 521, 552, 583 |
| BssMI | GATC | 2 cut(s) | 333, 432 |
| BssNI | GRCGYC | 1 cut(s) | 579 |
| BssT1I | CCWWGG | 3 cut(s) | 493, 521, 552 |
| Bst2UI | CCWGG | 2 cut(s) | 20, 585 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstACI | GRCGYC | 1 cut(s) | 579 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 504 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 505 |
| BstDEI | CTNAG | 2 cut(s) | 73, 399 |
| BstDSI | CCRYGG | 1 cut(s) | 552 |
| BstF5I | GGATG | 2 cut(s) | 99, 127 |
| BstH2I | RGCGCY | 1 cut(s) | 582 |
| BstHHI | GCGC | 1 cut(s) | 581 |
| BstKTI | GATC | 2 cut(s) | 336, 435 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 2 cut(s) | 333, 432 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 77, 86, 504 |
| BstNI | CCWGG | 2 cut(s) | 20, 585 |
| BstSCI | CCNGG | 2 cut(s) | 18, 583 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgI | CCRYGG | 1 cut(s) | 552 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 99, 127 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 505 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 1 cut(s) | 581 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 3 cut(s) | 496, 550, 637 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 5 cut(s) | 446, 482, 548, 553, 569 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 2 cut(s) | 73, 399 |
| DinI | GGCGCC | 1 cut(s) | 580 |
| DpnI | GATC | 2 cut(s) | 335, 434 |
| DpnII | GATC | 2 cut(s) | 333, 432 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 3 cut(s) | 493, 521, 552 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| Eco88I | CYCGRG | 2 cut(s) | 8, 131 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoRII | CCWGG | 2 cut(s) | 18, 583 |
| EcoT14I | CCWWGG | 3 cut(s) | 493, 521, 552 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| EgeI | GGCGCC | 1 cut(s) | 580 |
| EheI | GGCGCC | 1 cut(s) | 580 |
| ErhI | CCWWGG | 3 cut(s) | 493, 521, 552 |
| FaeI | CATG | 5 cut(s) | 449, 485, 551, 556, 572 |
| FatI | CATG | 5 cut(s) | 445, 481, 547, 552, 568 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 2 cut(s) | 86, 134 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 3 cut(s) | 15, 227, 522 |
| GlaI | GCGC | 1 cut(s) | 580 |
| GluI | GCNGC | 1 cut(s) | 69 |
| HaeII | RGCGCY | 1 cut(s) | 582 |
| HgaI | GACGC | 3 cut(s) | 496, 550, 637 |
| HhaI | GCGC | 1 cut(s) | 581 |
| Hin1I | GRCGYC | 1 cut(s) | 579 |
| Hin1II | CATG | 5 cut(s) | 449, 485, 551, 556, 572 |
| Hin6I | GCGC | 1 cut(s) | 579 |
| HinP1I | GCGC | 1 cut(s) | 579 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 6 cut(s) | 4, 109, 125, 209, 361, 411 |
| HphI | GGTGA | 3 cut(s) | 584, 592, 599 |
| Hpy166II | GTNNAC | 1 cut(s) | 511 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 627 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 221, 275, 446 |
| Hpy8I | GTNNAC | 1 cut(s) | 511 |
| HpyAV | CCTTC | 2 cut(s) | 159, 382 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 2 cut(s) | 24, 201 |
| HpyCH4V | TGCA | 4 cut(s) | 386, 425, 533, 596 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 77, 86, 504 |
| HpyF3I | CTNAG | 2 cut(s) | 73, 399 |
| HpySE526I | ACGT | 2 cut(s) | 24, 201 |
| Hsp92I | GRCGYC | 1 cut(s) | 579 |
| Hsp92II | CATG | 5 cut(s) | 449, 485, 551, 556, 572 |
| HspAI | GCGC | 1 cut(s) | 579 |
| KasI | GGCGCC | 1 cut(s) | 578 |
| Kzo9I | GATC | 2 cut(s) | 333, 432 |
| LmnI | GCTCC | 1 cut(s) | 458 |
| LpnPI | CCDG | 9 cut(s) | 5, 32, 175, 234, 513, 517, 530, 570, 597 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 3 cut(s) | 15, 227, 522 |
| MaeII | ACGT | 2 cut(s) | 24, 201 |
| MaeIII | GTNAC | 2 cut(s) | 206, 394 |
| MalI | GATC | 2 cut(s) | 335, 434 |
| MboI | GATC | 2 cut(s) | 333, 432 |
| MboII | GAAGA | 4 cut(s) | 164, 167, 197, 370 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MluCI | AATT | 1 cut(s) | 317 |
| Mly113I | GGCGCC | 1 cut(s) | 579 |
| MlyI | GAGTC | 2 cut(s) | 103, 203 |
| MnlI | CCTC | 2 cut(s) | 70, 257 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MseI | TTAA | 4 cut(s) | 303, 311, 420, 652 |
| MslI | CAYNNNNRTG | 4 cut(s) | 104, 120, 570, 573 |
| MspR9I | CCNGG | 2 cut(s) | 20, 585 |
| MvaI | CCWGG | 2 cut(s) | 20, 585 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 77, 86, 504 |
| NarI | GGCGCC | 1 cut(s) | 579 |
| NcoI | CCATGG | 1 cut(s) | 552 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 2 cut(s) | 333, 432 |
| NlaIII | CATG | 5 cut(s) | 449, 485, 551, 556, 572 |
| NlaIV | GGNNCC | 2 cut(s) | 499, 580 |
| NmuCI | GTSAC | 1 cut(s) | 206 |
| PaeR7I | CTCGAG | 2 cut(s) | 8, 131 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 4 cut(s) | 4, 125, 361, 411 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 103, 203 |
| PluTI | GGCGCC | 1 cut(s) | 582 |
| PpsI | GAGTC | 2 cut(s) | 103, 203 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 2 cut(s) | 18, 583 |
| PspGI | CCWGG | 2 cut(s) | 18, 583 |
| PspN4I | GGNNCC | 2 cut(s) | 499, 580 |
| PspXI | VCTCGAGB | 1 cut(s) | 131 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 4 cut(s) | 104, 120, 570, 573 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SaqAI | TTAA | 4 cut(s) | 303, 311, 420, 652 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 2 cut(s) | 333, 432 |
| SchI | GAGTC | 2 cut(s) | 103, 203 |
| ScrFI | CCNGG | 2 cut(s) | 20, 585 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SetI | ASST | 9 cut(s) | 27, 46, 52, 204, 374, 443, 453, 463, 589 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SfoI | GGCGCC | 1 cut(s) | 580 |
| Sfr274I | CTCGAG | 2 cut(s) | 8, 131 |
| SlaI | CTCGAG | 2 cut(s) | 8, 131 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 104, 120, 570, 573 |
| SmlI | CTYRAG | 4 cut(s) | 8, 45, 131, 632 |
| SmoI | CTYRAG | 4 cut(s) | 8, 45, 131, 632 |
| Sse9I | AATT | 1 cut(s) | 317 |
| SsiI | CCGC | 2 cut(s) | 250, 501 |
| SspDI | GGCGCC | 1 cut(s) | 578 |
| SspMI | CTAG | 3 cut(s) | 15, 227, 522 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StyD4I | CCNGG | 2 cut(s) | 18, 583 |
| StyI | CCWWGG | 3 cut(s) | 493, 521, 552 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 2 cut(s) | 27, 204 |
| TaqI | TCGA | 4 cut(s) | 9, 132, 409, 414 |
| TasI | AATT | 1 cut(s) | 317 |
| TfiI | GAWTC | 4 cut(s) | 4, 125, 361, 411 |
| Tru1I | TTAA | 4 cut(s) | 303, 311, 420, 652 |
| Tru9I | TTAA | 4 cut(s) | 303, 311, 420, 652 |
| TseFI | GTSAC | 1 cut(s) | 206 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 1 cut(s) | 206 |
| TspDTI | ATGAA | 2 cut(s) | 161, 434 |
| TspGWI | ACGGA | 2 cut(s) | 194, 445 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 524, 572 |
| XhoI | CTCGAG | 2 cut(s) | 8, 131 |
| XmaJI | CCTAGG | 1 cut(s) | 521 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 3 cut(s) | 15, 227, 522 |