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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 79, 361, 616 |
| AclWI | GGATC | 2 cut(s) | 551, 577 |
| AcoI | YGGCCR | 1 cut(s) | 682 |
| AcsI | RAATTY | 2 cut(s) | 416, 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 376, 608, 733 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 562, 818, 869 |
| AluI | AGCT | 5 cut(s) | 155, 161, 562, 818, 869 |
| Alw21I | GWGCWC | 1 cut(s) | 820 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 2 cut(s) | 551, 577 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 682 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 416, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 739 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 805 |
| BalI | TGGCCA | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 820 |
| BauI | CACGAG | 1 cut(s) | 819 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 820 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 6 cut(s) | 92, 342, 496, 497, 534, 723 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 5 cut(s) | 107, 126, 273, 338, 905 |
| BfoI | RGCGCY | 1 cut(s) | 740 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 638 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 679 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 4 cut(s) | 210, 238, 545, 600 |
| BseMI | GCAATG | 1 cut(s) | 679 |
| BseMII | CTCAG | 1 cut(s) | 747 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 805 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 2 cut(s) | 95, 684 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 820 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 2 cut(s) | 95, 684 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 805, 820 |
| Bsp143I | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 616 |
| BspANI | GGCC | 2 cut(s) | 95, 684 |
| BspCNI | CTCAG | 1 cut(s) | 748 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 1 cut(s) | 638 |
| BspPI | GGATC | 2 cut(s) | 551, 577 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 679 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| BssSI | CACGAG | 1 cut(s) | 819 |
| Bst2BI | CACGAG | 1 cut(s) | 819 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 637 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 510, 708, 756 |
| BstEII | GGTNACC | 1 cut(s) | 611 |
| BstF5I | GGATG | 4 cut(s) | 210, 238, 545, 600 |
| BstH2I | RGCGCY | 1 cut(s) | 740 |
| BstHHI | GCGC | 1 cut(s) | 739 |
| BstKTI | GATC | 6 cut(s) | 447, 459, 546, 572, 892, 904 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 197, 845, 866 |
| BstPI | GGTNACC | 1 cut(s) | 611 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 805 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 569 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 692 |
| BstYI | RGATCY | 1 cut(s) | 569 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuRI | GGCC | 2 cut(s) | 95, 684 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 210, 238, 545, 600 |
| BtsI | GCAGTG | 1 cut(s) | 834 |
| BtsIMutI | CAGTG | 1 cut(s) | 834 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 739 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 5 cut(s) | 256, 317, 557, 593, 686 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 184, 510, 708, 756 |
| DpnI | GATC | 6 cut(s) | 446, 458, 545, 571, 891, 903 |
| DpnII | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| EaeI | YGGCCR | 1 cut(s) | 682 |
| Eam1104I | CTCTTC | 1 cut(s) | 637 |
| EarI | CTCTTC | 1 cut(s) | 637 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 818 |
| Eco24I | GRGCYC | 1 cut(s) | 820 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco53kI | GAGCTC | 1 cut(s) | 818 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 611 |
| EcoICRI | GAGCTC | 1 cut(s) | 818 |
| EcoO65I | GGTNACC | 1 cut(s) | 611 |
| EcoT38I | GRGCYC | 1 cut(s) | 820 |
| FaeI | CATG | 5 cut(s) | 259, 320, 560, 596, 689 |
| FatI | CATG | 5 cut(s) | 255, 316, 556, 592, 685 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 4 cut(s) | 197, 245, 552, 587 |
| FriOI | GRGCYC | 1 cut(s) | 820 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 5 cut(s) | 107, 126, 273, 338, 905 |
| GlaI | GCGC | 1 cut(s) | 738 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 740 |
| HaeIII | GGCC | 2 cut(s) | 95, 684 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 739 |
| Hin1II | CATG | 5 cut(s) | 259, 320, 560, 596, 689 |
| Hin6I | GCGC | 1 cut(s) | 737 |
| HinP1I | GCGC | 1 cut(s) | 737 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 122, 220, 236, 320, 472, 752 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 650 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 52, 400, 757, 793 |
| Hpy8I | GTNNAC | 1 cut(s) | 650 |
| HpyAV | CCTTC | 3 cut(s) | 270, 493, 602 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 255, 536 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 197, 845, 866 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 510, 708, 756 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 5 cut(s) | 259, 320, 560, 596, 689 |
| HspAI | GCGC | 1 cut(s) | 737 |
| Kzo9I | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 9 cut(s) | 30, 46, 95, 144, 257, 338, 345, 522, 666 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 5 cut(s) | 107, 126, 273, 338, 905 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 2 cut(s) | 611, 832 |
| MalI | GATC | 6 cut(s) | 446, 458, 545, 571, 891, 903 |
| MboI | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| MboII | GAAGA | 8 cut(s) | 275, 278, 308, 481, 654, 836, 899, 908 |
| MflI | RGATCY | 1 cut(s) | 569 |
| MhlI | GDGCHC | 2 cut(s) | 805, 820 |
| MlsI | TGGCCA | 1 cut(s) | 684 |
| MluCI | AATT | 4 cut(s) | 17, 416, 428, 828 |
| MluNI | TGGCCA | 1 cut(s) | 684 |
| MlyI | GAGTC | 5 cut(s) | 131, 214, 314, 466, 761 |
| MnlI | CCTC | 7 cut(s) | 181, 368, 638, 658, 662, 688, 750 |
| Mox20I | TGGCCA | 1 cut(s) | 684 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 684 |
| MseI | TTAA | 3 cut(s) | 90, 414, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 690, 720 |
| Msp20I | TGGCCA | 1 cut(s) | 684 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 197, 845, 866 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| NlaIII | CATG | 5 cut(s) | 259, 320, 560, 596, 689 |
| NlaIV | GGNNCC | 1 cut(s) | 638 |
| NmuCI | GTSAC | 1 cut(s) | 832 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 5 cut(s) | 130, 214, 314, 466, 760 |
| PpsI | GAGTC | 5 cut(s) | 130, 214, 314, 466, 760 |
| Psp124BI | GAGCTC | 1 cut(s) | 820 |
| PspEI | GGTNACC | 1 cut(s) | 611 |
| PspN4I | GGNNCC | 1 cut(s) | 638 |
| PsuI | RGATCY | 1 cut(s) | 569 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 690, 720 |
| SacI | GAGCTC | 1 cut(s) | 820 |
| SaqAI | TTAA | 3 cut(s) | 90, 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 6 cut(s) | 444, 456, 543, 569, 889, 901 |
| SchI | GAGTC | 5 cut(s) | 131, 214, 314, 466, 761 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 805, 820 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 690, 720 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 416, 428, 828 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 616 |
| SspMI | CTAG | 5 cut(s) | 107, 126, 273, 338, 905 |
| SstI | GAGCTC | 1 cut(s) | 820 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 525, 778 |
| TasI | AATT | 4 cut(s) | 17, 416, 428, 828 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 3 cut(s) | 90, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 90, 414, 422 |
| TscAI | CASTG | 1 cut(s) | 841 |
| TseFI | GTSAC | 1 cut(s) | 832 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 832 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 1 cut(s) | 649 |
| TspRI | CASTG | 1 cut(s) | 841 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XapI | RAATTY | 2 cut(s) | 416, 428 |
| XbaI | TCTAGA | 1 cut(s) | 904 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 5 cut(s) | 107, 126, 273, 338, 905 |