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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 473 |
| AccB1I | GGYRCC | 1 cut(s) | 509 |
| AccBSI | CCGCTC | 1 cut(s) | 439 |
| AciI | CCGC | 2 cut(s) | 414, 439 |
| AclWI | GGATC | 2 cut(s) | 296, 366 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AcyI | GRCGYC | 1 cut(s) | 510 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 4 cut(s) | 41, 121, 369, 545 |
| AjnI | CCWGG | 1 cut(s) | 514 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AluBI | AGCT | 1 cut(s) | 317 |
| AluI | AGCT | 1 cut(s) | 317 |
| Alw21I | GWGCWC | 1 cut(s) | 194 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 2 cut(s) | 296, 366 |
| AoxI | GGCC | 1 cut(s) | 566 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 512 |
| AspS9I | GGNCC | 3 cut(s) | 441, 475, 567 |
| AsuHPI | GGTGA | 2 cut(s) | 515, 530 |
| AvaII | GGWCC | 2 cut(s) | 441, 475 |
| BanI | GGYRCC | 1 cut(s) | 509 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 194 |
| BccI | CCATC | 4 cut(s) | 87, 241, 242, 500 |
| BciT130I | CCWGG | 1 cut(s) | 516 |
| BciVI | GTATCC | 1 cut(s) | 450 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 1 cut(s) | 513 |
| BfuI | GTATCC | 1 cut(s) | 450 |
| Bme1390I | CCNGG | 1 cut(s) | 516 |
| Bme18I | GGWCC | 2 cut(s) | 441, 475 |
| BmgT120I | GGNCC | 3 cut(s) | 441, 475, 567 |
| BmiI | GGNNCC | 3 cut(s) | 431, 443, 511 |
| BmrFI | CCNGG | 1 cut(s) | 516 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 510 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 2 cut(s) | 375, 514 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseBI | CCWGG | 1 cut(s) | 516 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 2 cut(s) | 375, 514 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMII | CTCAG | 1 cut(s) | 577 |
| BshFI | GGCC | 1 cut(s) | 568 |
| BshNI | GGYRCC | 1 cut(s) | 509 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 194 |
| BslFI | GGGAC | 1 cut(s) | 396 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsmFI | GGGAC | 1 cut(s) | 396 |
| BsnI | GGCC | 1 cut(s) | 568 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 1 cut(s) | 194 |
| Bsp143I | GATC | 2 cut(s) | 288, 371 |
| BspACI | CCGC | 2 cut(s) | 414, 439 |
| BspANI | GGCC | 1 cut(s) | 568 |
| BspCNI | CTCAG | 1 cut(s) | 576 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 3 cut(s) | 431, 443, 511 |
| BspPI | GGATC | 2 cut(s) | 296, 366 |
| BspT107I | GGYRCC | 1 cut(s) | 509 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrBI | CCGCTC | 1 cut(s) | 439 |
| BssECI | CCNNGG | 2 cut(s) | 375, 514 |
| BssMI | GATC | 2 cut(s) | 288, 371 |
| BssNI | GRCGYC | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 1 cut(s) | 516 |
| BstACI | GRCGYC | 1 cut(s) | 510 |
| BstDEI | CTNAG | 6 cut(s) | 255, 420, 451, 563, 596, 630 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 1 cut(s) | 513 |
| BstHHI | GCGC | 1 cut(s) | 512 |
| BstKTI | GATC | 2 cut(s) | 291, 374 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 2 cut(s) | 288, 371 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 598 |
| BstNI | CCWGG | 1 cut(s) | 516 |
| BstSCI | CCNGG | 1 cut(s) | 514 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 450 |
| BsuRI | GGCC | 1 cut(s) | 568 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 512 |
| Cfr13I | GGNCC | 3 cut(s) | 441, 475, 567 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 357, 392 |
| CviAII | CATG | 2 cut(s) | 302, 338 |
| CviJI | RGCY | 7 cut(s) | 25, 102, 317, 432, 568, 601, 622 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 102, 317, 432, 568, 601, 622 |
| DdeI | CTNAG | 6 cut(s) | 255, 420, 451, 563, 596, 630 |
| DinI | GGCGCC | 1 cut(s) | 511 |
| DpnI | GATC | 2 cut(s) | 290, 373 |
| DpnII | GATC | 2 cut(s) | 288, 371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 473 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 473 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 2 cut(s) | 441, 475 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 514 |
| EgeI | GGCGCC | 1 cut(s) | 511 |
| EheI | GGCGCC | 1 cut(s) | 511 |
| FaeI | CATG | 2 cut(s) | 305, 341 |
| FaqI | GGGAC | 1 cut(s) | 396 |
| FatI | CATG | 2 cut(s) | 301, 337 |
| FauI | CCCGC | 1 cut(s) | 421 |
| FauNDI | CATATG | 1 cut(s) | 196 |
| FokI | GGATG | 1 cut(s) | 332 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 1 cut(s) | 511 |
| HaeII | RGCGCY | 1 cut(s) | 513 |
| HaeIII | GGCC | 1 cut(s) | 568 |
| HhaI | GCGC | 1 cut(s) | 512 |
| Hin1I | GRCGYC | 1 cut(s) | 510 |
| Hin1II | CATG | 2 cut(s) | 305, 341 |
| Hin6I | GCGC | 1 cut(s) | 510 |
| HinP1I | GCGC | 1 cut(s) | 510 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 267, 398 |
| HphI | GGTGA | 2 cut(s) | 515, 530 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 558 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 131, 302, 369, 395, 464 |
| HpyAV | CCTTC | 4 cut(s) | 15, 113, 238, 493 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 468 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 527 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 598 |
| HpyF3I | CTNAG | 6 cut(s) | 255, 420, 451, 563, 596, 630 |
| HpySE526I | ACGT | 2 cut(s) | 57, 468 |
| Hsp92I | GRCGYC | 1 cut(s) | 510 |
| Hsp92II | CATG | 2 cut(s) | 305, 341 |
| HspAI | GCGC | 1 cut(s) | 510 |
| KasI | GGCGCC | 1 cut(s) | 509 |
| Kzo9I | GATC | 2 cut(s) | 288, 371 |
| LmnI | GCTCC | 2 cut(s) | 314, 429 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 2 cut(s) | 57, 468 |
| MaeIII | GTNAC | 3 cut(s) | 62, 250, 274 |
| MalI | GATC | 2 cut(s) | 290, 373 |
| MbiI | CCGCTC | 1 cut(s) | 439 |
| MboI | GATC | 2 cut(s) | 288, 371 |
| MboII | GAAGA | 6 cut(s) | 20, 23, 53, 226, 367, 572 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 1 cut(s) | 194 |
| MluCI | AATT | 5 cut(s) | 173, 364, 403, 528, 611 |
| Mly113I | GGCGCC | 1 cut(s) | 510 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 350 |
| MspR9I | CCNGG | 1 cut(s) | 516 |
| MvaI | CCWGG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 598 |
| NarI | GGCGCC | 1 cut(s) | 510 |
| NdeI | CATATG | 1 cut(s) | 196 |
| NdeII | GATC | 2 cut(s) | 288, 371 |
| NlaIII | CATG | 2 cut(s) | 305, 341 |
| NlaIV | GGNNCC | 3 cut(s) | 431, 443, 511 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 267, 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 1 cut(s) | 513 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp6I | CCWGG | 1 cut(s) | 514 |
| PspGI | CCWGG | 1 cut(s) | 514 |
| PspN4I | GGNNCC | 3 cut(s) | 431, 443, 511 |
| PspPI | GGNCC | 3 cut(s) | 441, 475, 567 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 350 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 2 cut(s) | 288, 371 |
| Sau96I | GGNCC | 3 cut(s) | 441, 475, 567 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| ScrFI | CCNGG | 1 cut(s) | 516 |
| SduI | GDGCHC | 1 cut(s) | 194 |
| SetI | ASST | 7 cut(s) | 60, 84, 230, 299, 319, 471, 520 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 1 cut(s) | 511 |
| SinI | GGWCC | 2 cut(s) | 441, 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 350 |
| Sse9I | AATT | 5 cut(s) | 173, 364, 403, 528, 611 |
| SsiI | CCGC | 2 cut(s) | 414, 439 |
| SspDI | GGCGCC | 1 cut(s) | 509 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyD4I | CCNGG | 1 cut(s) | 514 |
| TaiI | ACGT | 2 cut(s) | 60, 471 |
| TaqI | TCGA | 2 cut(s) | 265, 270 |
| TasI | AATT | 5 cut(s) | 173, 364, 403, 528, 611 |
| TfiI | GAWTC | 2 cut(s) | 267, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 6 cut(s) | 17, 21, 290, 318, 335, 572 |
| TspGWI | ACGGA | 3 cut(s) | 50, 301, 364 |
| VpaK11BI | GGWCC | 2 cut(s) | 441, 475 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 83 |