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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 512, 893 |
| AccII | CGCG | 3 cut(s) | 50, 218, 780 |
| AciI | CCGC | 9 cut(s) | 50, 340, 419, 698, 736, 758, 791, 809, 855 |
| AclWI | GGATC | 1 cut(s) | 497 |
| AcsI | RAATTY | 1 cut(s) | 601 |
| AfaI | GTAC | 1 cut(s) | 415 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 512, 893 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 461 |
| AgsI | TTSAA | 2 cut(s) | 167, 355 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 585 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 8 cut(s) | 19, 155, 179, 259, 383, 824, 873, 922 |
| AluI | AGCT | 8 cut(s) | 19, 155, 179, 259, 383, 824, 873, 922 |
| Alw21I | GWGCWC | 4 cut(s) | 141, 385, 687, 705 |
| Alw26I | GTCTC | 2 cut(s) | 32, 402 |
| Alw44I | GTGCAC | 1 cut(s) | 701 |
| AlwI | GGATC | 1 cut(s) | 497 |
| Ama87I | CYCGRG | 1 cut(s) | 624 |
| AoxI | GGCC | 4 cut(s) | 429, 884, 908, 933 |
| ApaLI | GTGCAC | 1 cut(s) | 701 |
| ApeKI | GCWGC | 5 cut(s) | 277, 650, 661, 664, 824 |
| ApoI | RAATTY | 1 cut(s) | 601 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 451, 483 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 605 |
| AspLEI | GCGC | 5 cut(s) | 50, 81, 220, 623, 780 |
| AspS9I | GGNCC | 3 cut(s) | 67, 908, 933 |
| AsuHPI | GGTGA | 1 cut(s) | 520 |
| AvaI | CYCGRG | 1 cut(s) | 624 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| AxyI | CCTNAGG | 1 cut(s) | 912 |
| BaeGI | GKGCMC | 1 cut(s) | 705 |
| BanII | GRGCYC | 1 cut(s) | 385 |
| BauI | CACGAG | 1 cut(s) | 730 |
| BbsI | GAAGAC | 2 cut(s) | 252, 839 |
| Bbv12I | GWGCWC | 4 cut(s) | 141, 385, 687, 705 |
| BbvI | GCAGC | 5 cut(s) | 289, 637, 648, 651, 811 |
| BccI | CCATC | 8 cut(s) | 92, 122, 321, 397, 456, 758, 776, 845 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 615, 649 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 402 |
| BfaI | CTAG | 3 cut(s) | 35, 126, 590 |
| BfoI | RGCGCY | 1 cut(s) | 624 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 8 cut(s) | 278, 419, 651, 662, 665, 737, 792, 825 |
| BlpI | GCTNAGC | 1 cut(s) | 918 |
| BlsI | GCNGC | 8 cut(s) | 279, 420, 652, 663, 666, 738, 793, 826 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 585 |
| BmeT110I | CYCGRG | 1 cut(s) | 624 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 908, 933 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BpiI | GAAGAC | 2 cut(s) | 252, 839 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 918 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 2 cut(s) | 531, 582 |
| BsaWI | WCCGGW | 1 cut(s) | 614 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 241, 512, 893 |
| Bse1I | ACTGG | 5 cut(s) | 49, 432, 759, 792, 820 |
| Bse21I | CCTNAGG | 1 cut(s) | 912 |
| Bse3DI | GCAATG | 1 cut(s) | 295 |
| BseDI | CCNNGG | 2 cut(s) | 531, 582 |
| BseGI | GGATG | 2 cut(s) | 114, 448 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 512, 893 |
| BseMI | GCAATG | 1 cut(s) | 295 |
| BseMII | CTCAG | 2 cut(s) | 390, 932 |
| BseNI | ACTGG | 5 cut(s) | 49, 432, 759, 792, 820 |
| BseRI | GAGGAG | 1 cut(s) | 572 |
| BseSI | GKGCMC | 1 cut(s) | 705 |
| BseXI | GCAGC | 5 cut(s) | 289, 637, 648, 651, 811 |
| Bsh1236I | CGCG | 3 cut(s) | 50, 218, 780 |
| BshFI | GGCC | 4 cut(s) | 431, 886, 910, 935 |
| BsiHKAI | GWGCWC | 4 cut(s) | 141, 385, 687, 705 |
| BsiHKCI | CYCGRG | 1 cut(s) | 624 |
| BsiSI | CCGG | 2 cut(s) | 615, 668 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 512, 893 |
| BsmAI | GTCTC | 2 cut(s) | 32, 402 |
| BsnI | GGCC | 4 cut(s) | 431, 886, 910, 935 |
| BsoBI | CYCGRG | 1 cut(s) | 624 |
| Bsp1286I | GDGCHC | 4 cut(s) | 141, 385, 687, 705 |
| Bsp143I | GATC | 1 cut(s) | 502 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 918 |
| Bsp19I | CCATGG | 1 cut(s) | 531 |
| BspACI | CCGC | 9 cut(s) | 50, 340, 419, 698, 736, 758, 791, 809, 855 |
| BspANI | GGCC | 4 cut(s) | 431, 886, 910, 935 |
| BspCNI | CTCAG | 2 cut(s) | 389, 931 |
| BspFNI | CGCG | 3 cut(s) | 50, 218, 780 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 1 cut(s) | 497 |
| BspQI | GCTCTTC | 1 cut(s) | 390 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 295 |
| BsrI | ACTGG | 5 cut(s) | 49, 432, 759, 792, 820 |
| BssECI | CCNNGG | 2 cut(s) | 531, 582 |
| BssMI | GATC | 1 cut(s) | 502 |
| BssSI | CACGAG | 1 cut(s) | 730 |
| BssT1I | CCWWGG | 2 cut(s) | 531, 582 |
| Bst2BI | CACGAG | 1 cut(s) | 730 |
| Bst4CI | ACNGT | 4 cut(s) | 160, 545, 838, 845 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 888 |
| BstC8I | GCNNGC | 3 cut(s) | 433, 760, 884 |
| BstDEI | CTNAG | 3 cut(s) | 376, 912, 918 |
| BstDSI | CCRYGG | 1 cut(s) | 531 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 2 cut(s) | 114, 448 |
| BstFNI | CGCG | 3 cut(s) | 50, 218, 780 |
| BstH2I | RGCGCY | 1 cut(s) | 624 |
| BstHHI | GCGC | 5 cut(s) | 50, 81, 220, 623, 780 |
| BstKTI | GATC | 1 cut(s) | 505 |
| BstMAI | GTCTC | 2 cut(s) | 32, 402 |
| BstMBI | GATC | 1 cut(s) | 502 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 176, 627, 642, 879, 888 |
| BstNSI | RCATGY | 1 cut(s) | 465 |
| BstSLI | GKGCMC | 1 cut(s) | 705 |
| BstUI | CGCG | 3 cut(s) | 50, 218, 780 |
| BstV1I | GCAGC | 5 cut(s) | 289, 637, 648, 651, 811 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 839 |
| Bsu36I | CCTNAGG | 1 cut(s) | 912 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 4 cut(s) | 431, 886, 910, 935 |
| BtgI | CCRYGG | 1 cut(s) | 531 |
| BtgZI | GCGATG | 3 cut(s) | 340, 777, 795 |
| BtsCI | GGATG | 2 cut(s) | 114, 448 |
| BtsIMutI | CAGTG | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 3 cut(s) | 433, 760, 884 |
| CfoI | GCGC | 5 cut(s) | 50, 81, 220, 623, 780 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 908, 933 |
| CseI | GACGC | 2 cut(s) | 224, 424 |
| Csp6I | GTAC | 1 cut(s) | 414 |
| CviAII | CATG | 5 cut(s) | 208, 462, 532, 795, 888 |
| CviQI | GTAC | 1 cut(s) | 414 |
| DdeI | CTNAG | 3 cut(s) | 376, 912, 918 |
| DpnI | GATC | 1 cut(s) | 504 |
| DpnII | GATC | 1 cut(s) | 502 |
| DriI | GACNNNNNGTC | 1 cut(s) | 585 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 585 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| Ecl136II | GAGCTC | 1 cut(s) | 383 |
| Eco130I | CCWWGG | 2 cut(s) | 531, 582 |
| Eco24I | GRGCYC | 1 cut(s) | 385 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 1 cut(s) | 383 |
| Eco81I | CCTNAGG | 1 cut(s) | 912 |
| Eco88I | CYCGRG | 1 cut(s) | 624 |
| EcoICRI | GAGCTC | 1 cut(s) | 383 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 2 cut(s) | 531, 582 |
| EcoT38I | GRGCYC | 1 cut(s) | 385 |
| ErhI | CCWWGG | 2 cut(s) | 531, 582 |
| FaeI | CATG | 5 cut(s) | 211, 465, 535, 798, 891 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 5 cut(s) | 207, 461, 531, 794, 887 |
| FauI | CCCGC | 3 cut(s) | 43, 751, 802 |
| Fnu4HI | GCNGC | 8 cut(s) | 278, 419, 651, 662, 665, 737, 792, 825 |
| FokI | GGATG | 2 cut(s) | 101, 435 |
| FriOI | GRGCYC | 1 cut(s) | 385 |
| Fsp4HI | GCNGC | 8 cut(s) | 278, 419, 651, 662, 665, 737, 792, 825 |
| FspBI | CTAG | 3 cut(s) | 35, 126, 590 |
| GlaI | GCGC | 5 cut(s) | 49, 80, 219, 622, 779 |
| GluI | GCNGC | 8 cut(s) | 278, 419, 651, 662, 665, 737, 792, 825 |
| HaeII | RGCGCY | 1 cut(s) | 624 |
| HaeIII | GGCC | 4 cut(s) | 431, 886, 910, 935 |
| HapII | CCGG | 2 cut(s) | 615, 668 |
| HgaI | GACGC | 2 cut(s) | 224, 424 |
| HhaI | GCGC | 5 cut(s) | 50, 81, 220, 623, 780 |
| Hin1II | CATG | 5 cut(s) | 211, 465, 535, 798, 891 |
| Hin6I | GCGC | 5 cut(s) | 48, 79, 218, 621, 778 |
| HinP1I | GCGC | 5 cut(s) | 48, 79, 218, 621, 778 |
| HinfI | GANTC | 1 cut(s) | 299 |
| HpaII | CCGG | 2 cut(s) | 615, 668 |
| HphI | GGTGA | 1 cut(s) | 520 |
| Hpy166II | GTNNAC | 3 cut(s) | 439, 703, 841 |
| Hpy188I | TCNGA | 5 cut(s) | 71, 132, 402, 502, 726 |
| Hpy188III | TCNNGA | 2 cut(s) | 296, 378 |
| Hpy8I | GTNNAC | 3 cut(s) | 439, 703, 841 |
| HpyAV | CCTTC | 1 cut(s) | 467 |
| HpyCH4III | ACNGT | 4 cut(s) | 160, 545, 838, 845 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 2 cut(s) | 692, 703 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 176, 627, 642, 879, 888 |
| HpyF3I | CTNAG | 3 cut(s) | 376, 912, 918 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 5 cut(s) | 211, 465, 535, 798, 891 |
| HspAI | GCGC | 5 cut(s) | 48, 79, 218, 621, 778 |
| Kzo9I | GATC | 1 cut(s) | 502 |
| LguI | GCTCTTC | 1 cut(s) | 390 |
| LmnI | GCTCC | 2 cut(s) | 225, 380 |
| Lsp1109I | GCAGC | 5 cut(s) | 289, 637, 648, 651, 811 |
| MaeI | CTAG | 3 cut(s) | 35, 126, 590 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 3 cut(s) | 5, 296, 545 |
| MalI | GATC | 1 cut(s) | 504 |
| MboI | GATC | 1 cut(s) | 502 |
| MboII | GAAGA | 5 cut(s) | 257, 377, 598, 761, 844 |
| MhlI | GDGCHC | 4 cut(s) | 141, 385, 687, 705 |
| MluCI | AATT | 3 cut(s) | 189, 524, 601 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MnlI | CCTC | 6 cut(s) | 142, 235, 245, 347, 550, 620 |
| MroXI | GAANNNNTTC | 1 cut(s) | 605 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 2 cut(s) | 210, 710 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 615, 668 |
| MvnI | CGCG | 3 cut(s) | 50, 218, 780 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 176, 627, 642, 879, 888 |
| NcoI | CCATGG | 1 cut(s) | 531 |
| NdeII | GATC | 1 cut(s) | 502 |
| NlaIII | CATG | 5 cut(s) | 211, 465, 535, 798, 891 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NmuCI | GTSAC | 2 cut(s) | 296, 545 |
| NspI | RCATGY | 1 cut(s) | 465 |
| PaeR7I | CTCGAG | 1 cut(s) | 624 |
| PciI | ACATGT | 1 cut(s) | 461 |
| PciSI | GCTCTTC | 1 cut(s) | 390 |
| PdmI | GAANNNNTTC | 1 cut(s) | 605 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 512, 893 |
| PkrI | GCNGC | 8 cut(s) | 279, 420, 652, 663, 666, 738, 793, 826 |
| PleI | GAGTC | 1 cut(s) | 293 |
| PpsI | GAGTC | 1 cut(s) | 293 |
| PscI | ACATGT | 1 cut(s) | 461 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp124BI | GAGCTC | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 3 cut(s) | 67, 908, 933 |
| PspXI | VCTCGAGB | 1 cut(s) | 624 |
| RsaI | GTAC | 1 cut(s) | 415 |
| RsaNI | GTAC | 1 cut(s) | 414 |
| RseI | CAYNNNNRTG | 2 cut(s) | 210, 710 |
| SacI | GAGCTC | 1 cut(s) | 385 |
| SapI | GCTCTTC | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 8 cut(s) | 278, 419, 651, 662, 665, 737, 792, 825 |
| Sau3AI | GATC | 1 cut(s) | 502 |
| Sau96I | GGNCC | 3 cut(s) | 67, 908, 933 |
| SchI | GAGTC | 1 cut(s) | 293 |
| SduI | GDGCHC | 4 cut(s) | 141, 385, 687, 705 |
| Sfr274I | CTCGAG | 1 cut(s) | 624 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 624 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 210, 710 |
| SmlI | CTYRAG | 3 cut(s) | 89, 272, 624 |
| SmoI | CTYRAG | 3 cut(s) | 89, 272, 624 |
| Sse9I | AATT | 3 cut(s) | 189, 524, 601 |
| SsiI | CCGC | 9 cut(s) | 50, 340, 419, 698, 736, 758, 791, 809, 855 |
| SspMI | CTAG | 3 cut(s) | 35, 126, 590 |
| SstI | GAGCTC | 1 cut(s) | 385 |
| StyI | CCWWGG | 2 cut(s) | 531, 582 |
| TaaI | ACNGT | 4 cut(s) | 160, 545, 838, 845 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 625 |
| TasI | AATT | 3 cut(s) | 189, 524, 601 |
| TauI | GCSGC | 3 cut(s) | 421, 739, 794 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseFI | GTSAC | 2 cut(s) | 296, 545 |
| TseI | GCWGC | 5 cut(s) | 277, 650, 661, 664, 824 |
| Tsp45I | GTSAC | 2 cut(s) | 296, 545 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| TspRI | CASTG | 1 cut(s) | 432 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 512, 893 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 701 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 601 |
| XceI | RCATGY | 1 cut(s) | 465 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 624 |
| XmnI | GAANNNNTTC | 1 cut(s) | 605 |
| XspI | CTAG | 3 cut(s) | 35, 126, 590 |