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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1232 |
| AclI | AACGTT | 1 cut(s) | 1047 |
| AclWI | GGATC | 5 cut(s) | 210, 328, 465, 1070, 1140 |
| AcoI | YGGCCR | 1 cut(s) | 1219 |
| AcsI | RAATTY | 1 cut(s) | 935 |
| AcyI | GRCGYC | 1 cut(s) | 1233 |
| AdeI | CACNNNGTG | 1 cut(s) | 1414 |
| AgsI | TTSAA | 4 cut(s) | 67, 895, 1270, 1381 |
| AjiI | CACGTC | 1 cut(s) | 655 |
| AjnI | CCWGG | 1 cut(s) | 648 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 807, 839 |
| Alw21I | GWGCWC | 2 cut(s) | 1083, 1357 |
| Alw26I | GTCTC | 2 cut(s) | 811, 1015 |
| AlwI | GGATC | 5 cut(s) | 210, 328, 465, 1070, 1140 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 177, 295 |
| Ama87I | CYCGRG | 1 cut(s) | 638 |
| AoxI | GGCC | 3 cut(s) | 13, 612, 1219 |
| ApeKI | GCWGC | 8 cut(s) | 133, 168, 251, 286, 376, 387, 422, 698 |
| ApoI | RAATTY | 1 cut(s) | 935 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 924 |
| AspLEI | GCGC | 1 cut(s) | 1235 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| AvaI | CYCGRG | 1 cut(s) | 638 |
| AxyI | CCTNAGG | 1 cut(s) | 111 |
| BalI | TGGCCA | 1 cut(s) | 1221 |
| BanI | GGYRCC | 1 cut(s) | 1232 |
| BanII | GRGCYC | 2 cut(s) | 1083, 1357 |
| BauI | CACGAG | 1 cut(s) | 1356 |
| BbsI | GAAGAC | 2 cut(s) | 792, 995 |
| Bbv12I | GWGCWC | 2 cut(s) | 1083, 1357 |
| BbvI | GCAGC | 8 cut(s) | 120, 155, 238, 273, 363, 374, 409, 710 |
| BccI | CCATC | 7 cut(s) | 14, 386, 398, 611, 861, 1015, 1260 |
| BceAI | ACGGC | 1 cut(s) | 28 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 85, 119 |
| BciT130I | CCWGG | 1 cut(s) | 650 |
| BclI | TGATCA | 1 cut(s) | 1330 |
| BcoDI | GTCTC | 2 cut(s) | 811, 1015 |
| BfaI | CTAG | 2 cut(s) | 645, 857 |
| BfmI | CTRYAG | 3 cut(s) | 169, 252, 287 |
| BfoI | RGCGCY | 1 cut(s) | 1236 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 707 |
| BisI | GCNGC | 9 cut(s) | 134, 169, 252, 287, 377, 388, 423, 699, 1263 |
| BlsI | GCNGC | 9 cut(s) | 135, 170, 253, 288, 378, 389, 424, 700, 1264 |
| Bme1390I | CCNGG | 1 cut(s) | 650 |
| BmeT110I | CYCGRG | 1 cut(s) | 638 |
| BmgBI | CACGTC | 1 cut(s) | 655 |
| BmiI | GGNNCC | 2 cut(s) | 25, 1234 |
| BmrFI | CCNGG | 1 cut(s) | 650 |
| BmsI | GCATC | 3 cut(s) | 112, 613, 961 |
| BpiI | GAAGAC | 2 cut(s) | 792, 995 |
| BpmI | CTGGAG | 1 cut(s) | 746 |
| BpuEI | CTTGAG | 2 cut(s) | 593, 660 |
| Bsa29I | ATCGAT | 3 cut(s) | 214, 332, 469 |
| BsaHI | GRCGYC | 1 cut(s) | 1233 |
| BsaI | GGTCTC | 1 cut(s) | 811 |
| BsaJI | CCNNGG | 1 cut(s) | 1149 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 122, 152 |
| Bse1I | ACTGG | 1 cut(s) | 763 |
| Bse21I | CCTNAGG | 1 cut(s) | 111 |
| BseBI | CCWGG | 1 cut(s) | 650 |
| BseCI | ATCGAT | 3 cut(s) | 214, 332, 469 |
| BseDI | CCNNGG | 1 cut(s) | 1149 |
| BseGI | GGATG | 3 cut(s) | 409, 729, 757 |
| BseMII | CTCAG | 1 cut(s) | 102 |
| BseNI | ACTGG | 1 cut(s) | 763 |
| BseXI | GCAGC | 8 cut(s) | 120, 155, 238, 273, 363, 374, 409, 710 |
| BseYI | CCCAGC | 2 cut(s) | 177, 295 |
| Bsh1285I | CGRYCG | 1 cut(s) | 429 |
| BshFI | GGCC | 3 cut(s) | 15, 614, 1221 |
| BshNI | GGYRCC | 1 cut(s) | 1232 |
| BshVI | ATCGAT | 3 cut(s) | 214, 332, 469 |
| BsiEI | CGRYCG | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1083, 1357 |
| BsiHKCI | CYCGRG | 1 cut(s) | 638 |
| BsmAI | GTCTC | 2 cut(s) | 811, 1015 |
| BsmBI | CGTCTC | 1 cut(s) | 1015 |
| BsnI | GGCC | 3 cut(s) | 15, 614, 1221 |
| Bso31I | GGTCTC | 1 cut(s) | 811 |
| BsoBI | CYCGRG | 1 cut(s) | 638 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1083, 1357 |
| BspANI | GGCC | 3 cut(s) | 15, 614, 1221 |
| BspCNI | CTCAG | 1 cut(s) | 103 |
| BspDI | ATCGAT | 3 cut(s) | 214, 332, 469 |
| BspHI | TCATGA | 1 cut(s) | 1075 |
| BspLI | GGNNCC | 2 cut(s) | 25, 1234 |
| BspMAI | CTGCAG | 3 cut(s) | 173, 256, 291 |
| BspPI | GGATC | 5 cut(s) | 210, 328, 465, 1070, 1140 |
| BspQI | GCTCTTC | 8 cut(s) | 151, 158, 241, 269, 276, 366, 405, 496 |
| BspT107I | GGYRCC | 1 cut(s) | 1232 |
| BspTNI | GGTCTC | 1 cut(s) | 811 |
| BsrI | ACTGG | 1 cut(s) | 763 |
| BssECI | CCNNGG | 1 cut(s) | 1149 |
| BssNI | GRCGYC | 1 cut(s) | 1233 |
| BssSI | CACGAG | 1 cut(s) | 1356 |
| Bst2BI | CACGAG | 1 cut(s) | 1356 |
| Bst2UI | CCWGG | 1 cut(s) | 650 |
| Bst4CI | ACNGT | 1 cut(s) | 664 |
| BstACI | GRCGYC | 1 cut(s) | 1233 |
| BstC8I | GCNNGC | 2 cut(s) | 602, 672 |
| BstDEI | CTNAG | 4 cut(s) | 111, 703, 1029, 1245 |
| BstDSI | CCRYGG | 1 cut(s) | 1149 |
| BstF5I | GGATG | 3 cut(s) | 409, 729, 757 |
| BstH2I | RGCGCY | 1 cut(s) | 1236 |
| BstHHI | GCGC | 1 cut(s) | 1235 |
| BstMAI | GTCTC | 2 cut(s) | 811, 1015 |
| BstMCI | CGRYCG | 1 cut(s) | 429 |
| BstNI | CCWGG | 1 cut(s) | 650 |
| BstSCI | CCNGG | 1 cut(s) | 648 |
| BstSFI | CTRYAG | 3 cut(s) | 169, 252, 287 |
| BstV1I | GCAGC | 8 cut(s) | 120, 155, 238, 273, 363, 374, 409, 710 |
| BstV2I | GAAGAC | 2 cut(s) | 792, 995 |
| BstX2I | RGATCY | 1 cut(s) | 1145 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1229 |
| BstYI | RGATCY | 1 cut(s) | 1145 |
| Bsu15I | ATCGAT | 3 cut(s) | 214, 332, 469 |
| Bsu36I | CCTNAGG | 1 cut(s) | 111 |
| BsuRI | GGCC | 3 cut(s) | 15, 614, 1221 |
| BsuTUI | ATCGAT | 3 cut(s) | 214, 332, 469 |
| BtgI | CCRYGG | 1 cut(s) | 1149 |
| BtgZI | GCGATG | 2 cut(s) | 405, 989 |
| BtrI | CACGTC | 1 cut(s) | 655 |
| BtsCI | GGATG | 3 cut(s) | 409, 729, 757 |
| BtsI | GCAGTG | 3 cut(s) | 178, 261, 296 |
| BtsIMutI | CAGTG | 3 cut(s) | 178, 261, 296 |
| Cac8I | GCNNGC | 2 cut(s) | 602, 672 |
| CaiI | CAGNNNCTG | 2 cut(s) | 177, 295 |
| CciI | TCATGA | 1 cut(s) | 1075 |
| CfoI | GCGC | 1 cut(s) | 1235 |
| ClaI | ATCGAT | 3 cut(s) | 214, 332, 469 |
| CviAII | CATG | 3 cut(s) | 1076, 1112, 1223 |
| DdeI | CTNAG | 4 cut(s) | 111, 703, 1029, 1245 |
| DinI | GGCGCC | 1 cut(s) | 1234 |
| DraIII | CACNNNGTG | 1 cut(s) | 1414 |
| EaeI | YGGCCR | 1 cut(s) | 1219 |
| EciI | GGCGGA | 1 cut(s) | 587 |
| Ecl136II | GAGCTC | 2 cut(s) | 1081, 1355 |
| Eco24I | GRGCYC | 2 cut(s) | 1083, 1357 |
| Eco31I | GGTCTC | 1 cut(s) | 811 |
| Eco32I | GATATC | 1 cut(s) | 595 |
| Eco53kI | GAGCTC | 2 cut(s) | 1081, 1355 |
| Eco81I | CCTNAGG | 1 cut(s) | 111 |
| Eco88I | CYCGRG | 1 cut(s) | 638 |
| EcoICRI | GAGCTC | 2 cut(s) | 1081, 1355 |
| EcoRII | CCWGG | 1 cut(s) | 648 |
| EcoRV | GATATC | 1 cut(s) | 595 |
| EcoT38I | GRGCYC | 2 cut(s) | 1083, 1357 |
| EgeI | GGCGCC | 1 cut(s) | 1234 |
| EheI | GGCGCC | 1 cut(s) | 1234 |
| Esp3I | CGTCTC | 1 cut(s) | 1015 |
| FaeI | CATG | 3 cut(s) | 1079, 1115, 1226 |
| FatI | CATG | 3 cut(s) | 1075, 1111, 1222 |
| FauNDI | CATATG | 1 cut(s) | 747 |
| FbaI | TGATCA | 1 cut(s) | 1330 |
| Fnu4HI | GCNGC | 9 cut(s) | 134, 169, 252, 287, 377, 388, 423, 699, 1263 |
| FokI | GGATG | 3 cut(s) | 416, 716, 764 |
| FriOI | GRGCYC | 2 cut(s) | 1083, 1357 |
| Fsp4HI | GCNGC | 9 cut(s) | 134, 169, 252, 287, 377, 388, 423, 699, 1263 |
| FspBI | CTAG | 2 cut(s) | 645, 857 |
| GlaI | GCGC | 1 cut(s) | 1234 |
| GluI | GCNGC | 9 cut(s) | 134, 169, 252, 287, 377, 388, 423, 699, 1263 |
| GsaI | CCCAGC | 2 cut(s) | 181, 299 |
| GsuI | CTGGAG | 1 cut(s) | 746 |
| HaeII | RGCGCY | 1 cut(s) | 1236 |
| HaeIII | GGCC | 3 cut(s) | 15, 614, 1221 |
| HhaI | GCGC | 1 cut(s) | 1235 |
| Hin1I | GRCGYC | 1 cut(s) | 1233 |
| Hin1II | CATG | 3 cut(s) | 1079, 1115, 1226 |
| Hin6I | GCGC | 1 cut(s) | 1233 |
| HinP1I | GCGC | 1 cut(s) | 1233 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HindIII | AAGCTT | 2 cut(s) | 87, 678 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 4 cut(s) | 571, 919, 1170, 1330 |
| Hpy8I | GTNNAC | 1 cut(s) | 56 |
| Hpy99I | CGWCG | 2 cut(s) | 14, 367 |
| HpyAV | CCTTC | 3 cut(s) | 789, 1012, 1387 |
| HpyCH4III | ACNGT | 1 cut(s) | 664 |
| HpyCH4IV | ACGT | 3 cut(s) | 654, 831, 1047 |
| HpyCH4V | TGCA | 5 cut(s) | 171, 254, 289, 1016, 1055 |
| HpyF3I | CTNAG | 4 cut(s) | 111, 703, 1029, 1245 |
| HpySE526I | ACGT | 3 cut(s) | 654, 831, 1047 |
| Hsp92I | GRCGYC | 1 cut(s) | 1233 |
| Hsp92II | CATG | 3 cut(s) | 1079, 1115, 1226 |
| HspAI | GCGC | 1 cut(s) | 1233 |
| KasI | GGCGCC | 1 cut(s) | 1232 |
| Ksp22I | TGATCA | 1 cut(s) | 1330 |
| LguI | GCTCTTC | 8 cut(s) | 151, 158, 241, 269, 276, 366, 405, 496 |
| LmnI | GCTCC | 5 cut(s) | 130, 384, 553, 765, 1088 |
| Lsp1109I | GCAGC | 8 cut(s) | 120, 155, 238, 273, 363, 374, 409, 710 |
| LweI | GCATC | 3 cut(s) | 112, 613, 961 |
| MaeI | CTAG | 2 cut(s) | 645, 857 |
| MaeII | ACGT | 3 cut(s) | 654, 831, 1047 |
| MaeIII | GTNAC | 1 cut(s) | 836 |
| MflI | RGATCY | 1 cut(s) | 1145 |
| MhlI | GDGCHC | 2 cut(s) | 1083, 1357 |
| MlsI | TGGCCA | 1 cut(s) | 1221 |
| MluCI | AATT | 5 cut(s) | 68, 536, 935, 1138, 1177 |
| MluNI | TGGCCA | 1 cut(s) | 1221 |
| Mly113I | GGCGCC | 1 cut(s) | 1233 |
| MlyI | GAGTC | 6 cut(s) | 560, 650, 733, 833, 985, 1285 |
| Mox20I | TGGCCA | 1 cut(s) | 1221 |
| MroXI | GAANNNNTTC | 1 cut(s) | 924 |
| MscI | TGGCCA | 1 cut(s) | 1221 |
| MseI | TTAA | 3 cut(s) | 933, 941, 1050 |
| MslI | CAYNNNNRTG | 4 cut(s) | 734, 750, 1227, 1257 |
| Msp20I | TGGCCA | 1 cut(s) | 1221 |
| MspR9I | CCNGG | 1 cut(s) | 650 |
| MvaI | CCWGG | 1 cut(s) | 650 |
| NarI | GGCGCC | 1 cut(s) | 1233 |
| NdeI | CATATG | 1 cut(s) | 747 |
| NlaIII | CATG | 3 cut(s) | 1079, 1115, 1226 |
| NlaIV | GGNNCC | 2 cut(s) | 25, 1234 |
| NmuCI | GTSAC | 1 cut(s) | 836 |
| PaeR7I | CTCGAG | 1 cut(s) | 638 |
| PagI | TCATGA | 1 cut(s) | 1075 |
| PciSI | GCTCTTC | 8 cut(s) | 151, 158, 241, 269, 276, 366, 405, 496 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 211, 329, 466 |
| PdmI | GAANNNNTTC | 1 cut(s) | 924 |
| PfeI | GAWTC | 8 cut(s) | 211, 329, 466, 621, 634, 755, 947, 1041 |
| PkrI | GCNGC | 9 cut(s) | 135, 170, 253, 288, 378, 389, 424, 700, 1264 |
| PleI | GAGTC | 6 cut(s) | 560, 649, 733, 833, 985, 1284 |
| PluTI | GGCGCC | 1 cut(s) | 1236 |
| PpsI | GAGTC | 6 cut(s) | 560, 649, 733, 833, 985, 1284 |
| Psp124BI | GAGCTC | 2 cut(s) | 1083, 1357 |
| Psp1406I | AACGTT | 1 cut(s) | 1047 |
| Psp6I | CCWGG | 1 cut(s) | 648 |
| PspFI | CCCAGC | 2 cut(s) | 177, 295 |
| PspGI | CCWGG | 1 cut(s) | 648 |
| PspN4I | GGNNCC | 2 cut(s) | 25, 1234 |
| PstI | CTGCAG | 3 cut(s) | 173, 256, 291 |
| PstNI | CAGNNNCTG | 2 cut(s) | 177, 295 |
| PsuI | RGATCY | 1 cut(s) | 1145 |
| RseI | CAYNNNNRTG | 4 cut(s) | 734, 750, 1227, 1257 |
| SacI | GAGCTC | 2 cut(s) | 1083, 1357 |
| SapI | GCTCTTC | 8 cut(s) | 151, 158, 241, 269, 276, 366, 405, 496 |
| SaqAI | TTAA | 3 cut(s) | 933, 941, 1050 |
| SatI | GCNGC | 9 cut(s) | 134, 169, 252, 287, 377, 388, 423, 699, 1263 |
| SchI | GAGTC | 6 cut(s) | 560, 650, 733, 833, 985, 1285 |
| ScrFI | CCNGG | 1 cut(s) | 650 |
| SduI | GDGCHC | 2 cut(s) | 1083, 1357 |
| SfaNI | GCATC | 3 cut(s) | 112, 613, 961 |
| SfcI | CTRYAG | 3 cut(s) | 169, 252, 287 |
| SfoI | GGCGCC | 1 cut(s) | 1234 |
| Sfr274I | CTCGAG | 1 cut(s) | 638 |
| SlaI | CTCGAG | 1 cut(s) | 638 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 734, 750, 1227, 1257 |
| SmlI | CTYRAG | 3 cut(s) | 608, 638, 675 |
| SmoI | CTYRAG | 3 cut(s) | 608, 638, 675 |
| Sse9I | AATT | 5 cut(s) | 68, 536, 935, 1138, 1177 |
| SspDI | GGCGCC | 1 cut(s) | 1232 |
| SspMI | CTAG | 2 cut(s) | 645, 857 |
| SstI | GAGCTC | 2 cut(s) | 1083, 1357 |
| StyD4I | CCNGG | 1 cut(s) | 648 |
| TaaI | ACNGT | 1 cut(s) | 664 |
| TaiI | ACGT | 3 cut(s) | 657, 834, 1050 |
| TasI | AATT | 5 cut(s) | 68, 536, 935, 1138, 1177 |
| TauI | GCSGC | 1 cut(s) | 1265 |
| TfiI | GAWTC | 8 cut(s) | 211, 329, 466, 621, 634, 755, 947, 1041 |
| Tru1I | TTAA | 3 cut(s) | 933, 941, 1050 |
| Tru9I | TTAA | 3 cut(s) | 933, 941, 1050 |
| TscAI | CASTG | 3 cut(s) | 178, 261, 296 |
| TseFI | GTSAC | 1 cut(s) | 836 |
| TseI | GCWGC | 8 cut(s) | 133, 168, 251, 286, 376, 387, 422, 698 |
| Tsp45I | GTSAC | 1 cut(s) | 836 |
| TspDTI | ATGAA | 7 cut(s) | 224, 342, 479, 791, 795, 1064, 1109 |
| TspGWI | ACGGA | 3 cut(s) | 824, 1075, 1138 |
| TspRI | CASTG | 3 cut(s) | 178, 261, 296 |
| XapI | RAATTY | 1 cut(s) | 935 |
| XhoI | CTCGAG | 1 cut(s) | 638 |
| XmnI | GAANNNNTTC | 1 cut(s) | 924 |
| XspI | CTAG | 2 cut(s) | 645, 857 |