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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 288 |
| AccII | CGCG | 1 cut(s) | 134 |
| AciI | CCGC | 1 cut(s) | 256 |
| AclI | AACGTT | 1 cut(s) | 207 |
| AcoI | YGGCCR | 1 cut(s) | 331 |
| AcsI | RAATTY | 1 cut(s) | 18 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AflII | CTTAAG | 1 cut(s) | 5 |
| AgsI | TTSAA | 2 cut(s) | 271, 405 |
| AluBI | AGCT | 6 cut(s) | 71, 95, 175, 299, 457, 479 |
| AluI | AGCT | 6 cut(s) | 71, 95, 175, 299, 457, 479 |
| Alw21I | GWGCWC | 2 cut(s) | 57, 459 |
| Alw26I | GTCTC | 2 cut(s) | 318, 391 |
| AoxI | GGCC | 1 cut(s) | 331 |
| ApeKI | GCWGC | 1 cut(s) | 193 |
| ApoI | RAATTY | 1 cut(s) | 18 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspLEI | GCGC | 1 cut(s) | 136 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BanII | GRGCYC | 1 cut(s) | 459 |
| BbsI | GAAGAC | 2 cut(s) | 168, 371 |
| Bbv12I | GWGCWC | 2 cut(s) | 57, 459 |
| BbvI | GCAGC | 1 cut(s) | 205 |
| BccI | CCATC | 4 cut(s) | 8, 38, 237, 313 |
| BcoDI | GTCTC | 2 cut(s) | 318, 391 |
| BfaI | CTAG | 3 cut(s) | 42, 188, 519 |
| BfrI | CTTAAG | 1 cut(s) | 5 |
| BisI | GCNGC | 1 cut(s) | 194 |
| BlsI | GCNGC | 1 cut(s) | 195 |
| BmiI | GGNNCC | 1 cut(s) | 466 |
| BpiI | GAAGAC | 2 cut(s) | 168, 371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 356 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| Bse8I | GATNNNNATC | 1 cut(s) | 356 |
| BseGI | GGATG | 1 cut(s) | 30 |
| BseJI | GATNNNNATC | 1 cut(s) | 356 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseXI | GCAGC | 1 cut(s) | 205 |
| Bsh1236I | CGCG | 1 cut(s) | 134 |
| BshFI | GGCC | 1 cut(s) | 333 |
| BsiHKAI | GWGCWC | 2 cut(s) | 57, 459 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 2 cut(s) | 318, 391 |
| BsmBI | CGTCTC | 1 cut(s) | 391 |
| BsnI | GGCC | 1 cut(s) | 333 |
| Bsp1286I | GDGCHC | 2 cut(s) | 57, 459 |
| Bsp143I | GATC | 1 cut(s) | 357 |
| BspACI | CCGC | 1 cut(s) | 256 |
| BspANI | GGCC | 1 cut(s) | 333 |
| BspFNI | CGCG | 1 cut(s) | 134 |
| BspHI | TCATGA | 2 cut(s) | 111, 451 |
| BspLI | GGNNCC | 1 cut(s) | 466 |
| BspQI | GCTCTTC | 1 cut(s) | 306 |
| BspTI | CTTAAG | 1 cut(s) | 5 |
| BssMI | GATC | 1 cut(s) | 357 |
| Bst6I | CTCTTC | 1 cut(s) | 306 |
| BstAFI | CTTAAG | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 69 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 155 |
| BstF5I | GGATG | 1 cut(s) | 30 |
| BstFNI | CGCG | 1 cut(s) | 134 |
| BstHHI | GCGC | 1 cut(s) | 136 |
| BstKTI | GATC | 1 cut(s) | 360 |
| BstMAI | GTCTC | 2 cut(s) | 318, 391 |
| BstMBI | GATC | 1 cut(s) | 357 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 83, 92 |
| BstUI | CGCG | 1 cut(s) | 134 |
| BstV1I | GCAGC | 1 cut(s) | 205 |
| BstV2I | GAAGAC | 2 cut(s) | 168, 371 |
| BsuRI | GGCC | 1 cut(s) | 333 |
| BtgZI | GCGATG | 1 cut(s) | 256 |
| BtsCI | GGATG | 1 cut(s) | 30 |
| Cac8I | GCNNGC | 1 cut(s) | 69 |
| CciI | TCATGA | 2 cut(s) | 111, 451 |
| CfoI | GCGC | 1 cut(s) | 136 |
| CseI | GACGC | 1 cut(s) | 140 |
| CviAII | CATG | 4 cut(s) | 112, 124, 452, 469 |
| DpnI | GATC | 1 cut(s) | 359 |
| DpnII | GATC | 1 cut(s) | 357 |
| DraI | TTTAAA | 1 cut(s) | 82 |
| EaeI | YGGCCR | 1 cut(s) | 331 |
| Eam1104I | CTCTTC | 1 cut(s) | 306 |
| EarI | CTCTTC | 1 cut(s) | 306 |
| Ecl136II | GAGCTC | 1 cut(s) | 457 |
| Eco24I | GRGCYC | 1 cut(s) | 459 |
| Eco53kI | GAGCTC | 1 cut(s) | 457 |
| EcoICRI | GAGCTC | 1 cut(s) | 457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 155 |
| EcoRI | GAATTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 459 |
| Esp3I | CGTCTC | 1 cut(s) | 391 |
| FaeI | CATG | 4 cut(s) | 115, 127, 455, 472 |
| FatI | CATG | 4 cut(s) | 111, 123, 451, 468 |
| Fnu4HI | GCNGC | 1 cut(s) | 194 |
| FokI | GGATG | 1 cut(s) | 17 |
| FriOI | GRGCYC | 1 cut(s) | 459 |
| Fsp4HI | GCNGC | 1 cut(s) | 194 |
| FspBI | CTAG | 3 cut(s) | 42, 188, 519 |
| GlaI | GCGC | 1 cut(s) | 135 |
| GluI | GCNGC | 1 cut(s) | 194 |
| HaeIII | GGCC | 1 cut(s) | 333 |
| HgaI | GACGC | 1 cut(s) | 140 |
| HhaI | GCGC | 1 cut(s) | 136 |
| Hin1II | CATG | 4 cut(s) | 115, 127, 455, 472 |
| Hin6I | GCGC | 1 cut(s) | 134 |
| HinP1I | GCGC | 1 cut(s) | 134 |
| HinfI | GANTC | 2 cut(s) | 215, 367 |
| Hpy188I | TCNGA | 4 cut(s) | 48, 295, 318, 417 |
| Hpy188III | TCNNGA | 6 cut(s) | 23, 112, 212, 227, 361, 452 |
| HpyAV | CCTTC | 1 cut(s) | 388 |
| HpyCH4IV | ACGT | 4 cut(s) | 51, 207, 436, 474 |
| HpyCH4V | TGCA | 2 cut(s) | 392, 431 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 83, 92 |
| HpySE526I | ACGT | 4 cut(s) | 51, 207, 436, 474 |
| Hsp92II | CATG | 4 cut(s) | 115, 127, 455, 472 |
| HspAI | GCGC | 1 cut(s) | 134 |
| Kzo9I | GATC | 1 cut(s) | 357 |
| LguI | GCTCTTC | 1 cut(s) | 306 |
| LmnI | GCTCC | 2 cut(s) | 141, 464 |
| LpnPI | CCDG | 4 cut(s) | 8, 233, 240, 417 |
| Lsp1109I | GCAGC | 1 cut(s) | 205 |
| MaeI | CTAG | 3 cut(s) | 42, 188, 519 |
| MaeII | ACGT | 4 cut(s) | 51, 207, 436, 474 |
| MaeIII | GTNAC | 1 cut(s) | 212 |
| MalI | GATC | 1 cut(s) | 359 |
| MboI | GATC | 1 cut(s) | 357 |
| MboII | GAAGA | 4 cut(s) | 173, 293, 376, 517 |
| MhlI | GDGCHC | 2 cut(s) | 57, 459 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluCI | AATT | 2 cut(s) | 18, 409 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| MlyI | GAGTC | 2 cut(s) | 209, 361 |
| MnlI | CCTC | 4 cut(s) | 119, 151, 161, 263 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MseI | TTAA | 2 cut(s) | 6, 81 |
| MslI | CAYNNNNRTG | 1 cut(s) | 126 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MspCI | CTTAAG | 1 cut(s) | 5 |
| MvnI | CGCG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 83, 92 |
| NdeII | GATC | 1 cut(s) | 357 |
| NlaIII | CATG | 4 cut(s) | 115, 127, 455, 472 |
| NlaIV | GGNNCC | 1 cut(s) | 466 |
| NmuCI | GTSAC | 1 cut(s) | 212 |
| PagI | TCATGA | 2 cut(s) | 111, 451 |
| PciSI | GCTCTTC | 1 cut(s) | 306 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PkrI | GCNGC | 1 cut(s) | 195 |
| PleI | GAGTC | 2 cut(s) | 209, 361 |
| PpsI | GAGTC | 2 cut(s) | 209, 361 |
| PsiI | TTATAA | 1 cut(s) | 288 |
| Psp124BI | GAGCTC | 1 cut(s) | 459 |
| Psp1406I | AACGTT | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 1 cut(s) | 466 |
| RseI | CAYNNNNRTG | 1 cut(s) | 126 |
| SacI | GAGCTC | 1 cut(s) | 459 |
| SapI | GCTCTTC | 1 cut(s) | 306 |
| SaqAI | TTAA | 2 cut(s) | 6, 81 |
| SatI | GCNGC | 1 cut(s) | 194 |
| Sau3AI | GATC | 1 cut(s) | 357 |
| SchI | GAGTC | 2 cut(s) | 209, 361 |
| SduI | GDGCHC | 2 cut(s) | 57, 459 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 126 |
| SmlI | CTYRAG | 1 cut(s) | 5 |
| SmoI | CTYRAG | 1 cut(s) | 5 |
| Sse9I | AATT | 2 cut(s) | 18, 409 |
| SsiI | CCGC | 1 cut(s) | 256 |
| SspMI | CTAG | 3 cut(s) | 42, 188, 519 |
| SstI | GAGCTC | 1 cut(s) | 459 |
| TaiI | ACGT | 4 cut(s) | 54, 210, 439, 477 |
| TaqI | TCGA | 1 cut(s) | 360 |
| TasI | AATT | 2 cut(s) | 18, 409 |
| Tru1I | TTAA | 2 cut(s) | 6, 81 |
| Tru9I | TTAA | 2 cut(s) | 6, 81 |
| TseFI | GTSAC | 1 cut(s) | 212 |
| TseI | GCWGC | 1 cut(s) | 193 |
| Tsp45I | GTSAC | 1 cut(s) | 212 |
| TspDTI | ATGAA | 4 cut(s) | 140, 159, 440, 485 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| Vha464I | CTTAAG | 1 cut(s) | 5 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 155 |
| XapI | RAATTY | 1 cut(s) | 18 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 174 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 3 cut(s) | 42, 188, 519 |