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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 947 |
| AccII | CGCG | 3 cut(s) | 109, 277, 323 |
| AciI | CCGC | 6 cut(s) | 70, 275, 321, 520, 802, 951 |
| AclWI | GGATC | 2 cut(s) | 22, 704 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AcsI | RAATTY | 1 cut(s) | 869 |
| AcyI | GRCGYC | 1 cut(s) | 1011 |
| AfaI | GTAC | 1 cut(s) | 689 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 973, 977 |
| AflIII | ACRYGT | 1 cut(s) | 303 |
| AgsI | TTSAA | 3 cut(s) | 550, 817, 1064 |
| AjiI | CACGTC | 1 cut(s) | 306 |
| AjnI | CCWGG | 3 cut(s) | 361, 570, 1033 |
| AleI | CACNNNNGTG | 1 cut(s) | 893 |
| AluBI | AGCT | 4 cut(s) | 145, 250, 358, 596 |
| AluI | AGCT | 4 cut(s) | 145, 250, 358, 596 |
| Alw26I | GTCTC | 3 cut(s) | 733, 937, 991 |
| AlwI | GGATC | 2 cut(s) | 22, 704 |
| Ama87I | CYCGRG | 1 cut(s) | 560 |
| AoxI | GGCC | 3 cut(s) | 271, 412, 1086 |
| ApeKI | GCWGC | 3 cut(s) | 137, 620, 1043 |
| ApoI | RAATTY | 1 cut(s) | 869 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 846 |
| AspLEI | GCGC | 4 cut(s) | 109, 279, 325, 983 |
| AspS9I | GGNCC | 4 cut(s) | 272, 295, 317, 340 |
| AsuHPI | GGTGA | 2 cut(s) | 1034, 1049 |
| AvaI | CYCGRG | 1 cut(s) | 560 |
| AvaII | GGWCC | 3 cut(s) | 295, 317, 340 |
| AxyI | CCTNAGG | 1 cut(s) | 972 |
| BaeGI | GKGCMC | 1 cut(s) | 950 |
| BanI | GGYRCC | 1 cut(s) | 947 |
| BbsI | GAAGAC | 1 cut(s) | 917 |
| BbvI | GCAGC | 3 cut(s) | 149, 632, 1030 |
| BccI | CCATC | 8 cut(s) | 13, 533, 656, 783, 937, 1001, 1019, 1023 |
| BciT130I | CCWGG | 3 cut(s) | 363, 572, 1035 |
| BcoDI | GTCTC | 3 cut(s) | 733, 937, 991 |
| BfaI | CTAG | 2 cut(s) | 567, 779 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 629 |
| BisI | GCNGC | 3 cut(s) | 138, 621, 1044 |
| BlsI | GCNGC | 3 cut(s) | 139, 622, 1045 |
| Bme1390I | CCNGG | 3 cut(s) | 363, 572, 1035 |
| Bme18I | GGWCC | 3 cut(s) | 295, 317, 340 |
| BmeT110I | CYCGRG | 1 cut(s) | 560 |
| BmgBI | CACGTC | 1 cut(s) | 306 |
| BmgT120I | GGNCC | 4 cut(s) | 272, 295, 317, 340 |
| BmiI | GGNNCC | 6 cut(s) | 296, 319, 341, 342, 843, 949 |
| BmrFI | CCNGG | 3 cut(s) | 363, 572, 1035 |
| BmsI | GCATC | 4 cut(s) | 81, 535, 1030, 1038 |
| BoxI | GACNNNNGTC | 1 cut(s) | 82 |
| BpiI | GAAGAC | 1 cut(s) | 917 |
| BpmI | CTGGAG | 1 cut(s) | 668 |
| BpuEI | CTTGAG | 2 cut(s) | 80, 582 |
| Bsa29I | ATCGAT | 1 cut(s) | 17 |
| BsaHI | GRCGYC | 1 cut(s) | 1011 |
| BsaI | GGTCTC | 1 cut(s) | 733 |
| BsaJI | CCNNGG | 3 cut(s) | 361, 1002, 1033 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 342, 372 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 973, 977 |
| Bse1I | ACTGG | 1 cut(s) | 685 |
| Bse21I | CCTNAGG | 1 cut(s) | 972 |
| BseBI | CCWGG | 3 cut(s) | 363, 572, 1035 |
| BseCI | ATCGAT | 1 cut(s) | 17 |
| BseDI | CCNNGG | 3 cut(s) | 361, 1002, 1033 |
| BseGI | GGATG | 5 cut(s) | 447, 651, 679, 1012, 1029 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 973, 977 |
| BseNI | ACTGG | 1 cut(s) | 685 |
| BseRI | GAGGAG | 1 cut(s) | 61 |
| BseSI | GKGCMC | 1 cut(s) | 950 |
| BseXI | GCAGC | 3 cut(s) | 149, 632, 1030 |
| BseYI | CCCAGC | 2 cut(s) | 192, 246 |
| Bsh1236I | CGCG | 3 cut(s) | 109, 277, 323 |
| BshFI | GGCC | 3 cut(s) | 273, 414, 1088 |
| BshNI | GGYRCC | 1 cut(s) | 947 |
| BshVI | ATCGAT | 1 cut(s) | 17 |
| BsiHKCI | CYCGRG | 1 cut(s) | 560 |
| BsiSI | CCGG | 2 cut(s) | 400, 411 |
| BslFI | GGGAC | 3 cut(s) | 96, 308, 353 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 973, 977 |
| BsmAI | GTCTC | 3 cut(s) | 733, 937, 991 |
| BsmBI | CGTCTC | 1 cut(s) | 937 |
| BsmFI | GGGAC | 3 cut(s) | 96, 308, 353 |
| BsmI | GAATGC | 2 cut(s) | 10, 723 |
| BsnI | GGCC | 3 cut(s) | 273, 414, 1088 |
| Bso31I | GGTCTC | 1 cut(s) | 733 |
| BsoBI | CYCGRG | 1 cut(s) | 560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 950 |
| Bsp143I | GATC | 3 cut(s) | 14, 709, 885 |
| Bsp19I | CCATGG | 1 cut(s) | 1002 |
| BspACI | CCGC | 6 cut(s) | 70, 275, 321, 520, 802, 951 |
| BspANI | GGCC | 3 cut(s) | 273, 414, 1088 |
| BspDI | ATCGAT | 1 cut(s) | 17 |
| BspFNI | CGCG | 3 cut(s) | 109, 277, 323 |
| BspLI | GGNNCC | 6 cut(s) | 296, 319, 341, 342, 843, 949 |
| BspPI | GGATC | 2 cut(s) | 22, 704 |
| BspT107I | GGYRCC | 1 cut(s) | 947 |
| BspTNI | GGTCTC | 1 cut(s) | 733 |
| BsrI | ACTGG | 1 cut(s) | 685 |
| BssECI | CCNNGG | 3 cut(s) | 361, 1002, 1033 |
| BssMI | GATC | 3 cut(s) | 14, 709, 885 |
| BssNI | GRCGYC | 1 cut(s) | 1011 |
| BssT1I | CCWWGG | 1 cut(s) | 1002 |
| Bst2UI | CCWGG | 3 cut(s) | 363, 572, 1035 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstACI | GRCGYC | 1 cut(s) | 1011 |
| BstC8I | GCNNGC | 5 cut(s) | 130, 275, 524, 594, 979 |
| BstDEI | CTNAG | 3 cut(s) | 625, 972, 1083 |
| BstDSI | CCRYGG | 1 cut(s) | 1002 |
| BstF5I | GGATG | 5 cut(s) | 447, 651, 679, 1012, 1029 |
| BstFNI | CGCG | 3 cut(s) | 109, 277, 323 |
| BstHHI | GCGC | 4 cut(s) | 109, 279, 325, 983 |
| BstKTI | GATC | 3 cut(s) | 17, 712, 888 |
| BstMAI | GTCTC | 3 cut(s) | 733, 937, 991 |
| BstMBI | GATC | 3 cut(s) | 14, 709, 885 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 134, 285, 355, 617, 629, 638, 1049 |
| BstNI | CCWGG | 3 cut(s) | 363, 572, 1035 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 82 |
| BstSCI | CCNGG | 3 cut(s) | 361, 570, 1033 |
| BstSLI | GKGCMC | 1 cut(s) | 950 |
| BstUI | CGCG | 3 cut(s) | 109, 277, 323 |
| BstV1I | GCAGC | 3 cut(s) | 149, 632, 1030 |
| BstV2I | GAAGAC | 1 cut(s) | 917 |
| BstX2I | RGATCY | 1 cut(s) | 709 |
| BstYI | RGATCY | 1 cut(s) | 709 |
| Bsu15I | ATCGAT | 1 cut(s) | 17 |
| Bsu36I | CCTNAGG | 1 cut(s) | 972 |
| BsuRI | GGCC | 3 cut(s) | 273, 414, 1088 |
| BsuTUI | ATCGAT | 1 cut(s) | 17 |
| BtgI | CCRYGG | 1 cut(s) | 1002 |
| BtrI | CACGTC | 1 cut(s) | 306 |
| BtsCI | GGATG | 5 cut(s) | 447, 651, 679, 1012, 1029 |
| BtsI | GCAGTG | 1 cut(s) | 344 |
| BtsIMutI | CAGTG | 1 cut(s) | 344 |
| Cac8I | GCNNGC | 5 cut(s) | 130, 275, 524, 594, 979 |
| CfoI | GCGC | 4 cut(s) | 109, 279, 325, 983 |
| Cfr13I | GGNCC | 4 cut(s) | 272, 295, 317, 340 |
| ClaI | ATCGAT | 1 cut(s) | 17 |
| CseI | GACGC | 2 cut(s) | 98, 1000 |
| Csp6I | GTAC | 1 cut(s) | 688 |
| CviAII | CATG | 2 cut(s) | 1003, 1019 |
| CviQI | GTAC | 1 cut(s) | 688 |
| DdeI | CTNAG | 3 cut(s) | 625, 972, 1083 |
| DpnI | GATC | 3 cut(s) | 16, 711, 887 |
| DpnII | GATC | 3 cut(s) | 14, 709, 885 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| EciI | GGCGGA | 1 cut(s) | 509 |
| Eco130I | CCWWGG | 1 cut(s) | 1002 |
| Eco147I | AGGCCT | 1 cut(s) | 1088 |
| Eco31I | GGTCTC | 1 cut(s) | 733 |
| Eco32I | GATATC | 1 cut(s) | 517 |
| Eco47I | GGWCC | 3 cut(s) | 295, 317, 340 |
| Eco81I | CCTNAGG | 1 cut(s) | 972 |
| Eco88I | CYCGRG | 1 cut(s) | 560 |
| EcoO109I | RGGNCCY | 2 cut(s) | 317, 340 |
| EcoRII | CCWGG | 3 cut(s) | 361, 570, 1033 |
| EcoRV | GATATC | 1 cut(s) | 517 |
| EcoT14I | CCWWGG | 1 cut(s) | 1002 |
| ErhI | CCWWGG | 1 cut(s) | 1002 |
| Esp3I | CGTCTC | 1 cut(s) | 937 |
| FaeI | CATG | 2 cut(s) | 1006, 1022 |
| FaiI | YATR | 7 cut(s) | 669, 671, 698, 795, 996, 1004, 1020 |
| FaqI | GGGAC | 3 cut(s) | 96, 308, 353 |
| FatI | CATG | 2 cut(s) | 1002, 1018 |
| FauI | CCCGC | 2 cut(s) | 282, 328 |
| FauNDI | CATATG | 1 cut(s) | 669 |
| Fnu4HI | GCNGC | 3 cut(s) | 138, 621, 1044 |
| FokI | GGATG | 5 cut(s) | 454, 638, 686, 1016, 1019 |
| Fsp4HI | GCNGC | 3 cut(s) | 138, 621, 1044 |
| FspBI | CTAG | 2 cut(s) | 567, 779 |
| GlaI | GCGC | 4 cut(s) | 108, 278, 324, 982 |
| GluI | GCNGC | 3 cut(s) | 138, 621, 1044 |
| GsaI | CCCAGC | 2 cut(s) | 196, 250 |
| GsuI | CTGGAG | 1 cut(s) | 668 |
| HaeIII | GGCC | 3 cut(s) | 273, 414, 1088 |
| HapII | CCGG | 2 cut(s) | 400, 411 |
| HgaI | GACGC | 2 cut(s) | 98, 1000 |
| HhaI | GCGC | 4 cut(s) | 109, 279, 325, 983 |
| Hin1I | GRCGYC | 1 cut(s) | 1011 |
| Hin1II | CATG | 2 cut(s) | 1006, 1022 |
| Hin6I | GCGC | 4 cut(s) | 107, 277, 323, 981 |
| HinP1I | GCGC | 4 cut(s) | 107, 277, 323, 981 |
| HincII | GTYRAC | 4 cut(s) | 265, 309, 368, 378 |
| HindII | GTYRAC | 4 cut(s) | 265, 309, 368, 378 |
| HinfI | GANTC | 7 cut(s) | 30, 543, 661, 677, 761, 913, 1079 |
| HpaII | CCGG | 2 cut(s) | 400, 411 |
| HphI | GGTGA | 2 cut(s) | 1034, 1049 |
| Hpy166II | GTNNAC | 5 cut(s) | 265, 309, 368, 378, 961 |
| Hpy188I | TCNGA | 5 cut(s) | 29, 45, 77, 493, 841 |
| Hpy188III | TCNNGA | 6 cut(s) | 315, 512, 547, 560, 773, 827 |
| Hpy8I | GTNNAC | 5 cut(s) | 265, 309, 368, 378, 961 |
| Hpy99I | CGWCG | 1 cut(s) | 375 |
| HpyAV | CCTTC | 3 cut(s) | 126, 207, 934 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 4 cut(s) | 261, 305, 370, 753 |
| HpyCH4V | TGCA | 2 cut(s) | 938, 1046 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 134, 285, 355, 617, 629, 638, 1049 |
| HpyF3I | CTNAG | 3 cut(s) | 625, 972, 1083 |
| HpySE526I | ACGT | 4 cut(s) | 261, 305, 370, 753 |
| Hsp92I | GRCGYC | 1 cut(s) | 1011 |
| Hsp92II | CATG | 2 cut(s) | 1006, 1022 |
| HspAI | GCGC | 4 cut(s) | 107, 277, 323, 981 |
| KflI | GGGWCCC | 1 cut(s) | 340 |
| Kzo9I | GATC | 3 cut(s) | 14, 709, 885 |
| LmnI | GCTCC | 2 cut(s) | 363, 687 |
| Lsp1109I | GCAGC | 3 cut(s) | 149, 632, 1030 |
| LweI | GCATC | 4 cut(s) | 81, 535, 1030, 1038 |
| MaeI | CTAG | 2 cut(s) | 567, 779 |
| MaeII | ACGT | 4 cut(s) | 261, 305, 370, 753 |
| MaeIII | GTNAC | 3 cut(s) | 151, 446, 758 |
| MalI | GATC | 3 cut(s) | 16, 711, 887 |
| MboI | GATC | 3 cut(s) | 14, 709, 885 |
| MflI | RGATCY | 1 cut(s) | 709 |
| MhlI | GDGCHC | 1 cut(s) | 950 |
| MluCI | AATT | 5 cut(s) | 252, 404, 458, 555, 869 |
| MlyI | GAGTC | 4 cut(s) | 655, 755, 907, 1073 |
| MroXI | GAANNNNTTC | 1 cut(s) | 846 |
| MseI | TTAA | 2 cut(s) | 855, 863 |
| MslI | CAYNNNNRTG | 5 cut(s) | 656, 672, 893, 1020, 1023 |
| MspI | CCGG | 2 cut(s) | 400, 411 |
| MspR9I | CCNGG | 3 cut(s) | 363, 572, 1035 |
| Mva1269I | GAATGC | 2 cut(s) | 10, 723 |
| MvaI | CCWGG | 3 cut(s) | 363, 572, 1035 |
| MvnI | CGCG | 3 cut(s) | 109, 277, 323 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 134, 285, 355, 617, 629, 638, 1049 |
| NcoI | CCATGG | 1 cut(s) | 1002 |
| NdeI | CATATG | 1 cut(s) | 669 |
| NdeII | GATC | 3 cut(s) | 14, 709, 885 |
| NlaIII | CATG | 2 cut(s) | 1006, 1022 |
| NlaIV | GGNNCC | 6 cut(s) | 296, 319, 341, 342, 843, 949 |
| NmuCI | GTSAC | 1 cut(s) | 758 |
| OliI | CACNNNNGTG | 1 cut(s) | 893 |
| PaeR7I | CTCGAG | 1 cut(s) | 560 |
| PceI | AGGCCT | 1 cut(s) | 1088 |
| PctI | GAATGC | 2 cut(s) | 10, 723 |
| PdmI | GAANNNNTTC | 1 cut(s) | 846 |
| PfeI | GAWTC | 3 cut(s) | 30, 543, 677 |
| PkrI | GCNGC | 3 cut(s) | 139, 622, 1045 |
| PleI | GAGTC | 4 cut(s) | 655, 755, 907, 1073 |
| PpsI | GAGTC | 4 cut(s) | 655, 755, 907, 1073 |
| PpuMI | RGGWCCY | 2 cut(s) | 317, 340 |
| PshAI | GACNNNNGTC | 1 cut(s) | 82 |
| Psp5II | RGGWCCY | 2 cut(s) | 317, 340 |
| Psp6I | CCWGG | 3 cut(s) | 361, 570, 1033 |
| PspFI | CCCAGC | 2 cut(s) | 192, 246 |
| PspGI | CCWGG | 3 cut(s) | 361, 570, 1033 |
| PspN4I | GGNNCC | 6 cut(s) | 296, 319, 341, 342, 843, 949 |
| PspPI | GGNCC | 4 cut(s) | 272, 295, 317, 340 |
| PspPPI | RGGWCCY | 2 cut(s) | 317, 340 |
| PsuI | RGATCY | 1 cut(s) | 709 |
| RsaI | GTAC | 1 cut(s) | 689 |
| RsaNI | GTAC | 1 cut(s) | 688 |
| RseI | CAYNNNNRTG | 5 cut(s) | 656, 672, 893, 1020, 1023 |
| SaqAI | TTAA | 2 cut(s) | 855, 863 |
| SatI | GCNGC | 3 cut(s) | 138, 621, 1044 |
| Sau3AI | GATC | 3 cut(s) | 14, 709, 885 |
| Sau96I | GGNCC | 4 cut(s) | 272, 295, 317, 340 |
| SchI | GAGTC | 4 cut(s) | 655, 755, 907, 1073 |
| ScrFI | CCNGG | 3 cut(s) | 363, 572, 1035 |
| SduI | GDGCHC | 1 cut(s) | 950 |
| SfaNI | GCATC | 4 cut(s) | 81, 535, 1030, 1038 |
| Sfr274I | CTCGAG | 1 cut(s) | 560 |
| SinI | GGWCC | 3 cut(s) | 295, 317, 340 |
| SlaI | CTCGAG | 1 cut(s) | 560 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 656, 672, 893, 1020, 1023 |
| SmlI | CTYRAG | 3 cut(s) | 95, 560, 597 |
| SmoI | CTYRAG | 3 cut(s) | 95, 560, 597 |
| Sse9I | AATT | 5 cut(s) | 252, 404, 458, 555, 869 |
| SseBI | AGGCCT | 1 cut(s) | 1088 |
| SsiI | CCGC | 6 cut(s) | 70, 275, 321, 520, 802, 951 |
| SspMI | CTAG | 2 cut(s) | 567, 779 |
| StuI | AGGCCT | 1 cut(s) | 1088 |
| StyD4I | CCNGG | 3 cut(s) | 361, 570, 1033 |
| StyI | CCWWGG | 1 cut(s) | 1002 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 4 cut(s) | 264, 308, 373, 756 |
| TaqI | TCGA | 4 cut(s) | 17, 437, 561, 735 |
| TaqII | GACCGA | 1 cut(s) | 363 |
| TasI | AATT | 5 cut(s) | 252, 404, 458, 555, 869 |
| TfiI | GAWTC | 3 cut(s) | 30, 543, 677 |
| Tru1I | TTAA | 2 cut(s) | 855, 863 |
| Tru9I | TTAA | 2 cut(s) | 855, 863 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseFI | GTSAC | 1 cut(s) | 758 |
| TseI | GCWGC | 3 cut(s) | 137, 620, 1043 |
| Tsp45I | GTSAC | 1 cut(s) | 758 |
| TspDTI | ATGAA | 3 cut(s) | 17, 713, 717 |
| TspGWI | ACGGA | 3 cut(s) | 72, 746, 946 |
| TspRI | CASTG | 1 cut(s) | 351 |
| VpaK11BI | GGWCC | 3 cut(s) | 295, 317, 340 |
| XapI | RAATTY | 1 cut(s) | 869 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 974, 1022 |
| XhoI | CTCGAG | 1 cut(s) | 560 |
| XmnI | GAANNNNTTC | 1 cut(s) | 846 |
| XspI | CTAG | 2 cut(s) | 567, 779 |