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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 255 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 591 |
| AccII | CGCG | 2 cut(s) | 50, 531 |
| AciI | CCGC | 2 cut(s) | 50, 223 |
| AclI | AACGTT | 1 cut(s) | 174 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 542, 613 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 22, 238, 372 |
| AluBI | AGCT | 3 cut(s) | 142, 424, 446 |
| AluI | AGCT | 3 cut(s) | 142, 424, 446 |
| Alw26I | GTCTC | 2 cut(s) | 32, 358 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 1 cut(s) | 160 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 267 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 533 |
| AspS9I | GGNCC | 2 cut(s) | 67, 593 |
| AvaII | GGWCC | 2 cut(s) | 67, 593 |
| BalI | TGGCCA | 1 cut(s) | 300 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 87, 119 |
| BauI | CACGAG | 1 cut(s) | 409 |
| BbsI | GAAGAC | 1 cut(s) | 338 |
| BbvI | GCAGC | 1 cut(s) | 172 |
| BccI | CCATC | 3 cut(s) | 122, 204, 280 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 358 |
| BfaI | CTAG | 2 cut(s) | 35, 486 |
| BfmI | CTRYAG | 1 cut(s) | 523 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 161 |
| BlsI | GCNGC | 1 cut(s) | 162 |
| Bme18I | GGWCC | 2 cut(s) | 67, 593 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 593 |
| BmiI | GGNNCC | 2 cut(s) | 68, 433 |
| BpiI | GAAGAC | 1 cut(s) | 338 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BsaBI | GATNNNNATC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 2 cut(s) | 492, 537 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 542, 613 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 323 |
| BseDI | CCNNGG | 2 cut(s) | 492, 537 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 1 cut(s) | 323 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 542, 613 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 172 |
| Bsh1236I | CGCG | 2 cut(s) | 50, 531 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BslFI | GGGAC | 1 cut(s) | 587 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 542, 613 |
| BsmAI | GTCTC | 2 cut(s) | 32, 358 |
| BsmBI | CGTCTC | 1 cut(s) | 358 |
| BsmFI | GGGAC | 1 cut(s) | 587 |
| BsnI | GGCC | 1 cut(s) | 300 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspACI | CCGC | 2 cut(s) | 50, 223 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspFNI | CGCG | 2 cut(s) | 50, 531 |
| BspHI | TCATGA | 1 cut(s) | 418 |
| BspLI | GGNNCC | 2 cut(s) | 68, 433 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 2 cut(s) | 492, 537 |
| BssMI | GATC | 1 cut(s) | 97 |
| BssSI | CACGAG | 1 cut(s) | 409 |
| BssT1I | CCWWGG | 1 cut(s) | 537 |
| Bst2BI | CACGAG | 1 cut(s) | 409 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 501, 564 |
| BstDSI | CCRYGG | 1 cut(s) | 492 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 2 cut(s) | 50, 531 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 533 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMAI | GTCTC | 2 cut(s) | 32, 358 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstSFI | CTRYAG | 1 cut(s) | 523 |
| BstUI | CGCG | 2 cut(s) | 50, 531 |
| BstV1I | GCAGC | 1 cut(s) | 172 |
| BstV2I | GAAGAC | 1 cut(s) | 338 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| BtgI | CCRYGG | 1 cut(s) | 492 |
| BtgZI | GCGATG | 1 cut(s) | 223 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| CciI | TCATGA | 1 cut(s) | 418 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 533 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 593 |
| CseI | GACGC | 1 cut(s) | 555 |
| CviAII | CATG | 2 cut(s) | 419, 436 |
| CviJI | RGCY | 9 cut(s) | 113, 124, 142, 219, 266, 300, 424, 434, 446 |
| CviKI_1 | RGCY | 9 cut(s) | 113, 124, 142, 219, 266, 300, 424, 434, 446 |
| DdeI | CTNAG | 2 cut(s) | 501, 564 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 591 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 591 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 1 cut(s) | 537 |
| Eco47I | GGWCC | 2 cut(s) | 67, 593 |
| EcoT14I | CCWWGG | 1 cut(s) | 537 |
| ErhI | CCWWGG | 1 cut(s) | 537 |
| Esp3I | CGTCTC | 1 cut(s) | 358 |
| FaeI | CATG | 2 cut(s) | 422, 439 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 587 |
| FatI | CATG | 2 cut(s) | 418, 435 |
| FauI | CCCGC | 1 cut(s) | 43 |
| Fnu4HI | GCNGC | 1 cut(s) | 161 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 161 |
| FspBI | CTAG | 2 cut(s) | 35, 486 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 532 |
| GluI | GCNGC | 1 cut(s) | 161 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HgaI | GACGC | 1 cut(s) | 555 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 533 |
| Hin1II | CATG | 2 cut(s) | 422, 439 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 531 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 531 |
| HinfI | GANTC | 3 cut(s) | 182, 334, 515 |
| Hpy188I | TCNGA | 5 cut(s) | 71, 262, 285, 384, 514 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 179, 194, 328, 409, 419, 582 |
| HpyAV | CCTTC | 2 cut(s) | 278, 611 |
| HpyCH4IV | ACGT | 3 cut(s) | 174, 403, 441 |
| HpyF3I | CTNAG | 2 cut(s) | 501, 564 |
| HpySE526I | ACGT | 3 cut(s) | 174, 403, 441 |
| Hsp92II | CATG | 2 cut(s) | 422, 439 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 531 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LmnI | GCTCC | 2 cut(s) | 431, 553 |
| LpnPI | CCDG | 8 cut(s) | 23, 30, 92, 207, 374, 384, 567, 576 |
| Lsp1109I | GCAGC | 1 cut(s) | 172 |
| MaeI | CTAG | 2 cut(s) | 35, 486 |
| MaeII | ACGT | 3 cut(s) | 174, 403, 441 |
| MaeIII | GTNAC | 2 cut(s) | 5, 179 |
| MalI | GATC | 1 cut(s) | 99 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 2 cut(s) | 343, 484 |
| MlsI | TGGCCA | 1 cut(s) | 300 |
| MluCI | AATT | 3 cut(s) | 376, 577, 622 |
| MluNI | TGGCCA | 1 cut(s) | 300 |
| MlyI | GAGTC | 3 cut(s) | 176, 328, 524 |
| MnlI | CCTC | 4 cut(s) | 230, 405, 536, 607 |
| Mox20I | TGGCCA | 1 cut(s) | 300 |
| MroXI | GAANNNNTTC | 1 cut(s) | 267 |
| MscI | TGGCCA | 1 cut(s) | 300 |
| MseI | TTAA | 3 cut(s) | 90, 323, 625 |
| MslI | CAYNNNNRTG | 1 cut(s) | 467 |
| Msp20I | TGGCCA | 1 cut(s) | 300 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MvnI | CGCG | 2 cut(s) | 50, 531 |
| NdeII | GATC | 1 cut(s) | 97 |
| NlaIII | CATG | 2 cut(s) | 422, 439 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 433 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| PagI | TCATGA | 1 cut(s) | 418 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 489, 553 |
| PdmI | GAANNNNTTC | 1 cut(s) | 267 |
| PkrI | GCNGC | 1 cut(s) | 162 |
| PleI | GAGTC | 3 cut(s) | 176, 328, 523 |
| PpsI | GAGTC | 3 cut(s) | 176, 328, 523 |
| PsiI | TTATAA | 1 cut(s) | 255 |
| Psp1406I | AACGTT | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 433 |
| PspPI | GGNCC | 2 cut(s) | 67, 593 |
| RseI | CAYNNNNRTG | 1 cut(s) | 467 |
| SaqAI | TTAA | 3 cut(s) | 90, 323, 625 |
| SatI | GCNGC | 1 cut(s) | 161 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| Sau96I | GGNCC | 2 cut(s) | 67, 593 |
| SchI | GAGTC | 3 cut(s) | 176, 328, 524 |
| SfcI | CTRYAG | 1 cut(s) | 523 |
| SinI | GGWCC | 2 cut(s) | 67, 593 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 467 |
| SmlI | CTYRAG | 2 cut(s) | 89, 155 |
| SmoI | CTYRAG | 2 cut(s) | 89, 155 |
| Sse9I | AATT | 3 cut(s) | 376, 577, 622 |
| SsiI | CCGC | 2 cut(s) | 50, 223 |
| SspMI | CTAG | 2 cut(s) | 35, 486 |
| StyI | CCWWGG | 1 cut(s) | 537 |
| TaiI | ACGT | 3 cut(s) | 177, 406, 444 |
| TaqI | TCGA | 2 cut(s) | 100, 327 |
| TasI | AATT | 3 cut(s) | 376, 577, 622 |
| Tru1I | TTAA | 3 cut(s) | 90, 323, 625 |
| Tru9I | TTAA | 3 cut(s) | 90, 323, 625 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 1 cut(s) | 160 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 3 cut(s) | 407, 452, 485 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 593 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 141 |
| XmnI | GAANNNNTTC | 1 cut(s) | 267 |
| XspI | CTAG | 2 cut(s) | 35, 486 |