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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 726 |
| AccII | CGCG | 1 cut(s) | 666 |
| AciI | CCGC | 2 cut(s) | 76, 358 |
| AclWI | GGATC | 2 cut(s) | 548, 618 |
| AcsI | RAATTY | 1 cut(s) | 425 |
| AcyI | GRCGYC | 1 cut(s) | 682 |
| AfaI | GTAC | 1 cut(s) | 245 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 677 |
| AgsI | TTSAA | 2 cut(s) | 373, 566 |
| AjiI | CACGTC | 1 cut(s) | 133 |
| AjnI | CCWGG | 2 cut(s) | 102, 126 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 285, 317 |
| AluBI | AGCT | 5 cut(s) | 152, 158, 559, 569, 696 |
| AluI | AGCT | 5 cut(s) | 152, 158, 559, 569, 696 |
| Alw21I | GWGCWC | 1 cut(s) | 561 |
| Alw26I | GTCTC | 2 cut(s) | 289, 493 |
| AlwI | GGATC | 2 cut(s) | 548, 618 |
| Ama87I | CYCGRG | 1 cut(s) | 116 |
| AoxI | GGCC | 1 cut(s) | 90 |
| ApeKI | GCWGC | 2 cut(s) | 176, 578 |
| ApoI | RAATTY | 1 cut(s) | 425 |
| AspLEI | GCGC | 1 cut(s) | 668 |
| AspS9I | GGNCC | 1 cut(s) | 728 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 116 |
| AvaII | GGWCC | 1 cut(s) | 728 |
| BanII | GRGCYC | 2 cut(s) | 123, 561 |
| BbsI | GAAGAC | 2 cut(s) | 270, 473 |
| Bbv12I | GWGCWC | 1 cut(s) | 561 |
| BbvI | GCAGC | 2 cut(s) | 188, 565 |
| BccI | CCATC | 3 cut(s) | 89, 212, 339 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 512, 546 |
| BciT130I | CCWGG | 2 cut(s) | 104, 128 |
| BciVI | GTATCC | 2 cut(s) | 100, 703 |
| BcoDI | GTCTC | 2 cut(s) | 289, 493 |
| BfaI | CTAG | 2 cut(s) | 335, 717 |
| BfmI | CTRYAG | 1 cut(s) | 531 |
| BfuI | GTATCC | 2 cut(s) | 100, 703 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 185 |
| BisI | GCNGC | 2 cut(s) | 177, 579 |
| BlsI | GCNGC | 2 cut(s) | 178, 580 |
| Bme1390I | CCNGG | 2 cut(s) | 104, 128 |
| Bme18I | GGWCC | 1 cut(s) | 728 |
| BmeT110I | CYCGRG | 1 cut(s) | 116 |
| BmgBI | CACGTC | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 1 cut(s) | 728 |
| BmrFI | CCNGG | 2 cut(s) | 104, 128 |
| BmsI | GCATC | 1 cut(s) | 91 |
| BpiI | GAAGAC | 2 cut(s) | 270, 473 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 680, 712 |
| BpmI | CTGGAG | 1 cut(s) | 224 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 138 |
| Bsa29I | ATCGAT | 1 cut(s) | 522 |
| BsaHI | GRCGYC | 1 cut(s) | 682 |
| BsaI | GGTCTC | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 1 cut(s) | 627 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 677 |
| Bse1I | ACTGG | 2 cut(s) | 46, 241 |
| BseBI | CCWGG | 2 cut(s) | 104, 128 |
| BseCI | ATCGAT | 1 cut(s) | 522 |
| BseDI | CCNNGG | 1 cut(s) | 627 |
| BseGI | GGATG | 3 cut(s) | 207, 235, 597 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 677 |
| BseNI | ACTGG | 2 cut(s) | 46, 241 |
| BseXI | GCAGC | 2 cut(s) | 188, 565 |
| BseYI | CCCAGC | 1 cut(s) | 122 |
| Bsh1236I | CGCG | 1 cut(s) | 666 |
| BshFI | GGCC | 1 cut(s) | 92 |
| BshVI | ATCGAT | 1 cut(s) | 522 |
| BsiHKAI | GWGCWC | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 677 |
| BsmAI | GTCTC | 2 cut(s) | 289, 493 |
| BsmBI | CGTCTC | 1 cut(s) | 493 |
| BsmI | GAATGC | 1 cut(s) | 580 |
| BsnI | GGCC | 1 cut(s) | 92 |
| Bso31I | GGTCTC | 1 cut(s) | 289 |
| BsoBI | CYCGRG | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 2 cut(s) | 123, 561 |
| Bsp143I | GATC | 3 cut(s) | 441, 540, 623 |
| BspACI | CCGC | 2 cut(s) | 76, 358 |
| BspANI | GGCC | 1 cut(s) | 92 |
| BspDI | ATCGAT | 1 cut(s) | 522 |
| BspFNI | CGCG | 1 cut(s) | 666 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspMAI | CTGCAG | 1 cut(s) | 535 |
| BspPI | GGATC | 2 cut(s) | 548, 618 |
| BspTNI | GGTCTC | 1 cut(s) | 289 |
| BsrI | ACTGG | 2 cut(s) | 46, 241 |
| BssECI | CCNNGG | 1 cut(s) | 627 |
| BssMI | GATC | 3 cut(s) | 441, 540, 623 |
| BssNI | GRCGYC | 1 cut(s) | 682 |
| Bst2UI | CCWGG | 2 cut(s) | 104, 128 |
| BstACI | GRCGYC | 1 cut(s) | 682 |
| BstC8I | GCNNGC | 2 cut(s) | 80, 150 |
| BstDEI | CTNAG | 5 cut(s) | 181, 507, 672, 704, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 675 |
| BstF5I | GGATG | 3 cut(s) | 207, 235, 597 |
| BstFNI | CGCG | 1 cut(s) | 666 |
| BstHHI | GCGC | 1 cut(s) | 668 |
| BstKTI | GATC | 3 cut(s) | 444, 543, 626 |
| BstMAI | GTCTC | 2 cut(s) | 289, 493 |
| BstMBI | GATC | 3 cut(s) | 441, 540, 623 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 164, 173, 185, 575, 688 |
| BstNI | CCWGG | 2 cut(s) | 104, 128 |
| BstSCI | CCNGG | 2 cut(s) | 102, 126 |
| BstSFI | CTRYAG | 1 cut(s) | 531 |
| BstUI | CGCG | 1 cut(s) | 666 |
| BstV1I | GCAGC | 2 cut(s) | 188, 565 |
| BstV2I | GAAGAC | 2 cut(s) | 270, 473 |
| BstX2I | RGATCY | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 623 |
| Bsu15I | ATCGAT | 1 cut(s) | 522 |
| BsuI | GTATCC | 2 cut(s) | 100, 703 |
| BsuRI | GGCC | 1 cut(s) | 92 |
| BsuTUI | ATCGAT | 1 cut(s) | 522 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtrI | CACGTC | 1 cut(s) | 133 |
| BtsCI | GGATG | 3 cut(s) | 207, 235, 597 |
| Cac8I | GCNNGC | 2 cut(s) | 80, 150 |
| CciI | TCATGA | 1 cut(s) | 553 |
| CfoI | GCGC | 1 cut(s) | 668 |
| Cfr13I | GGNCC | 1 cut(s) | 728 |
| ClaI | ATCGAT | 1 cut(s) | 522 |
| CseI | GACGC | 1 cut(s) | 671 |
| Csp6I | GTAC | 1 cut(s) | 244 |
| CviAII | CATG | 2 cut(s) | 554, 590 |
| CviQI | GTAC | 1 cut(s) | 244 |
| DdeI | CTNAG | 5 cut(s) | 181, 507, 672, 704, 747 |
| DpnI | GATC | 3 cut(s) | 443, 542, 625 |
| DpnII | GATC | 3 cut(s) | 441, 540, 623 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 726 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 726 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| Ecl136II | GAGCTC | 1 cut(s) | 559 |
| Eco24I | GRGCYC | 2 cut(s) | 123, 561 |
| Eco31I | GGTCTC | 1 cut(s) | 289 |
| Eco32I | GATATC | 1 cut(s) | 53 |
| Eco47I | GGWCC | 1 cut(s) | 728 |
| Eco53kI | GAGCTC | 1 cut(s) | 559 |
| Eco88I | CYCGRG | 1 cut(s) | 116 |
| EcoICRI | GAGCTC | 1 cut(s) | 559 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 675 |
| EcoRI | GAATTC | 1 cut(s) | 425 |
| EcoRII | CCWGG | 2 cut(s) | 102, 126 |
| EcoRV | GATATC | 1 cut(s) | 53 |
| EcoT22I | ATGCAT | 1 cut(s) | 591 |
| EcoT38I | GRGCYC | 2 cut(s) | 123, 561 |
| Esp3I | CGTCTC | 1 cut(s) | 493 |
| FaeI | CATG | 2 cut(s) | 557, 593 |
| FatI | CATG | 2 cut(s) | 553, 589 |
| FauNDI | CATATG | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 2 cut(s) | 177, 579 |
| FokI | GGATG | 3 cut(s) | 194, 242, 584 |
| FriOI | GRGCYC | 2 cut(s) | 123, 561 |
| Fsp4HI | GCNGC | 2 cut(s) | 177, 579 |
| FspBI | CTAG | 2 cut(s) | 335, 717 |
| GlaI | GCGC | 1 cut(s) | 667 |
| GluI | GCNGC | 2 cut(s) | 177, 579 |
| GsaI | CCCAGC | 1 cut(s) | 126 |
| GsuI | CTGGAG | 1 cut(s) | 224 |
| HaeIII | GGCC | 1 cut(s) | 92 |
| HgaI | GACGC | 1 cut(s) | 671 |
| HhaI | GCGC | 1 cut(s) | 668 |
| Hin1I | GRCGYC | 1 cut(s) | 682 |
| Hin1II | CATG | 2 cut(s) | 557, 593 |
| Hin6I | GCGC | 1 cut(s) | 666 |
| HinP1I | GCGC | 1 cut(s) | 666 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 8 cut(s) | 23, 99, 217, 233, 317, 469, 519, 650 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 1 cut(s) | 397 |
| HpyAV | CCTTC | 2 cut(s) | 267, 490 |
| HpyCH4IV | ACGT | 2 cut(s) | 132, 309 |
| HpyCH4V | TGCA | 4 cut(s) | 408, 494, 533, 589 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 164, 173, 185, 575, 688 |
| HpyF3I | CTNAG | 5 cut(s) | 181, 507, 672, 704, 747 |
| HpySE526I | ACGT | 2 cut(s) | 132, 309 |
| Hsp92I | GRCGYC | 1 cut(s) | 682 |
| Hsp92II | CATG | 2 cut(s) | 557, 593 |
| HspAI | GCGC | 1 cut(s) | 666 |
| Kzo9I | GATC | 3 cut(s) | 441, 540, 623 |
| LmnI | GCTCC | 1 cut(s) | 243 |
| Lsp1109I | GCAGC | 2 cut(s) | 188, 565 |
| LweI | GCATC | 1 cut(s) | 91 |
| MaeI | CTAG | 2 cut(s) | 335, 717 |
| MaeII | ACGT | 2 cut(s) | 132, 309 |
| MaeIII | GTNAC | 3 cut(s) | 5, 314, 526 |
| MalI | GATC | 3 cut(s) | 443, 542, 625 |
| MboI | GATC | 3 cut(s) | 441, 540, 623 |
| MboII | GAAGA | 5 cut(s) | 272, 275, 305, 478, 619 |
| MflI | RGATCY | 1 cut(s) | 623 |
| MhlI | GDGCHC | 2 cut(s) | 123, 561 |
| MluCI | AATT | 5 cut(s) | 17, 138, 425, 616, 655 |
| MlyI | GAGTC | 4 cut(s) | 17, 211, 311, 463 |
| MnlI | CCTC | 3 cut(s) | 178, 365, 671 |
| Mph1103I | ATGCAT | 1 cut(s) | 591 |
| MseI | TTAA | 2 cut(s) | 411, 419 |
| MslI | CAYNNNNRTG | 3 cut(s) | 212, 228, 602 |
| MspR9I | CCNGG | 2 cut(s) | 104, 128 |
| Mva1269I | GAATGC | 1 cut(s) | 580 |
| MvaI | CCWGG | 2 cut(s) | 104, 128 |
| MvnI | CGCG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 164, 173, 185, 575, 688 |
| NdeI | CATATG | 1 cut(s) | 225 |
| NdeII | GATC | 3 cut(s) | 441, 540, 623 |
| NlaIII | CATG | 2 cut(s) | 557, 593 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| NsiI | ATGCAT | 1 cut(s) | 591 |
| PaeR7I | CTCGAG | 1 cut(s) | 116 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PctI | GAATGC | 1 cut(s) | 580 |
| PfeI | GAWTC | 4 cut(s) | 99, 233, 519, 650 |
| PfoI | TCCNGGA | 1 cut(s) | 102 |
| PkrI | GCNGC | 2 cut(s) | 178, 580 |
| PleI | GAGTC | 4 cut(s) | 17, 211, 311, 463 |
| PpsI | GAGTC | 4 cut(s) | 17, 211, 311, 463 |
| Psp124BI | GAGCTC | 1 cut(s) | 561 |
| Psp6I | CCWGG | 2 cut(s) | 102, 126 |
| PspFI | CCCAGC | 1 cut(s) | 122 |
| PspGI | CCWGG | 2 cut(s) | 102, 126 |
| PspPI | GGNCC | 1 cut(s) | 728 |
| PstI | CTGCAG | 1 cut(s) | 535 |
| PsuI | RGATCY | 1 cut(s) | 623 |
| RsaI | GTAC | 1 cut(s) | 245 |
| RsaNI | GTAC | 1 cut(s) | 244 |
| RseI | CAYNNNNRTG | 3 cut(s) | 212, 228, 602 |
| SacI | GAGCTC | 1 cut(s) | 561 |
| SaqAI | TTAA | 2 cut(s) | 411, 419 |
| SatI | GCNGC | 2 cut(s) | 177, 579 |
| Sau3AI | GATC | 3 cut(s) | 441, 540, 623 |
| Sau96I | GGNCC | 1 cut(s) | 728 |
| SchI | GAGTC | 4 cut(s) | 17, 211, 311, 463 |
| ScrFI | CCNGG | 2 cut(s) | 104, 128 |
| SduI | GDGCHC | 2 cut(s) | 123, 561 |
| SfaNI | GCATC | 1 cut(s) | 91 |
| SfcI | CTRYAG | 1 cut(s) | 531 |
| Sfr274I | CTCGAG | 1 cut(s) | 116 |
| SinI | GGWCC | 1 cut(s) | 728 |
| SlaI | CTCGAG | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 212, 228, 602 |
| SmlI | CTYRAG | 3 cut(s) | 86, 116, 153 |
| SmoI | CTYRAG | 3 cut(s) | 86, 116, 153 |
| Sse9I | AATT | 5 cut(s) | 17, 138, 425, 616, 655 |
| SsiI | CCGC | 2 cut(s) | 76, 358 |
| SspMI | CTAG | 2 cut(s) | 335, 717 |
| SstI | GAGCTC | 1 cut(s) | 561 |
| StyD4I | CCNGG | 2 cut(s) | 102, 126 |
| TaiI | ACGT | 2 cut(s) | 135, 312 |
| TaqI | TCGA | 5 cut(s) | 117, 291, 517, 522, 620 |
| TasI | AATT | 5 cut(s) | 17, 138, 425, 616, 655 |
| TfiI | GAWTC | 4 cut(s) | 99, 233, 519, 650 |
| Tru1I | TTAA | 2 cut(s) | 411, 419 |
| Tru9I | TTAA | 2 cut(s) | 411, 419 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 2 cut(s) | 176, 578 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 4 cut(s) | 269, 273, 542, 587 |
| TspGWI | ACGGA | 3 cut(s) | 302, 553, 616 |
| VpaK11BI | GGWCC | 1 cut(s) | 728 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 675 |
| XapI | RAATTY | 1 cut(s) | 425 |
| XbaI | TCTAGA | 1 cut(s) | 716 |
| XhoI | CTCGAG | 1 cut(s) | 116 |
| XspI | CTAG | 2 cut(s) | 335, 717 |
| Zsp2I | ATGCAT | 1 cut(s) | 591 |