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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfeI | AGCGCT | 1 cut(s) | 405 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 562 |
| AluI | AGCT | 3 cut(s) | 155, 161, 562 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 1 cut(s) | 496 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 374 |
| Aor51HI | AGCGCT | 1 cut(s) | 405 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| AspS9I | GGNCC | 1 cut(s) | 286 |
| AvaI | CYCGRG | 2 cut(s) | 119, 374 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfoI | RGCGCY | 1 cut(s) | 407 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 374 |
| BmgT120I | GGNCC | 1 cut(s) | 286 |
| BmiI | GGNNCC | 2 cut(s) | 287, 288 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 3 cut(s) | 139, 210, 238 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 374 |
| BslFI | GGGAC | 1 cut(s) | 272 |
| BsmAI | GTCTC | 1 cut(s) | 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 272 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 374 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 2 cut(s) | 370, 444 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 287, 288 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 2 cut(s) | 370, 444 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 510 |
| BstF5I | GGATG | 3 cut(s) | 139, 210, 238 |
| BstH2I | RGCGCY | 1 cut(s) | 407 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstKTI | GATC | 2 cut(s) | 373, 447 |
| BstMAI | GTCTC | 1 cut(s) | 496 |
| BstMBI | GATC | 2 cut(s) | 370, 444 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtsCI | GGATG | 3 cut(s) | 139, 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 406 |
| Cfr13I | GGNCC | 1 cut(s) | 286 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 557 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 510 |
| DpnI | GATC | 2 cut(s) | 372, 446 |
| DpnII | GATC | 2 cut(s) | 370, 444 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco47III | AGCGCT | 1 cut(s) | 405 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 374 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 1 cut(s) | 560 |
| FaiI | YATR | 7 cut(s) | 228, 230, 257, 354, 458, 558, 575 |
| FaqI | GGGAC | 1 cut(s) | 272 |
| FatI | CATG | 1 cut(s) | 556 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 146, 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 407 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin1II | CATG | 1 cut(s) | 560 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 220, 236, 320, 377, 472, 522, 543 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 332, 374, 386, 557 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 510 |
| Hsp92II | CATG | 1 cut(s) | 560 |
| HspAI | GCGC | 1 cut(s) | 404 |
| KflI | GGGWCCC | 1 cut(s) | 286 |
| Kzo9I | GATC | 2 cut(s) | 370, 444 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 46, 95, 116, 143, 257, 286, 345 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 529 |
| MalI | GATC | 2 cut(s) | 372, 446 |
| MboI | GATC | 2 cut(s) | 370, 444 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 308, 481 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 2 cut(s) | 17, 428 |
| MlyI | GAGTC | 4 cut(s) | 214, 314, 386, 466 |
| MnlI | CCTC | 2 cut(s) | 181, 368 |
| MseI | TTAA | 3 cut(s) | 414, 422, 586 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 370, 444 |
| NlaIII | CATG | 1 cut(s) | 560 |
| NlaIV | GGNNCC | 2 cut(s) | 287, 288 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 2 cut(s) | 119, 374 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PfeI | GAWTC | 4 cut(s) | 102, 236, 522, 543 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 214, 314, 385, 466 |
| PpsI | GAGTC | 4 cut(s) | 214, 314, 385, 466 |
| PpuMI | RGGWCCY | 1 cut(s) | 286 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp5II | RGGWCCY | 1 cut(s) | 286 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 287, 288 |
| PspPI | GGNCC | 1 cut(s) | 286 |
| PspPPI | RGGWCCY | 1 cut(s) | 286 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 586 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 370, 444 |
| Sau96I | GGNCC | 1 cut(s) | 286 |
| SchI | GAGTC | 4 cut(s) | 214, 314, 386, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SetI | ASST | 7 cut(s) | 12, 65, 157, 163, 339, 554, 564 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 2 cut(s) | 119, 374 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SlaI | CTCGAG | 2 cut(s) | 119, 374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 374 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 374 |
| Sse9I | AATT | 2 cut(s) | 17, 428 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaqI | TCGA | 6 cut(s) | 120, 294, 375, 398, 520, 525 |
| TasI | AATT | 2 cut(s) | 17, 428 |
| TfiI | GAWTC | 4 cut(s) | 102, 236, 522, 543 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 586 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 586 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 545 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 2 cut(s) | 119, 374 |
| XspI | CTAG | 2 cut(s) | 126, 338 |