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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 392 |
| AciI | CCGC | 1 cut(s) | 145 |
| AcyI | GRCGYC | 3 cut(s) | 363, 375, 393 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 337, 341 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AjnI | CCWGG | 1 cut(s) | 397 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| Alw26I | GTCTC | 2 cut(s) | 280, 314 |
| AoxI | GGCC | 2 cut(s) | 449, 482 |
| AseI | ATTAAT | 1 cut(s) | 284 |
| AspA2I | CCTAGG | 1 cut(s) | 335 |
| AspLEI | GCGC | 2 cut(s) | 347, 395 |
| AsuHPI | GGTGA | 3 cut(s) | 398, 406, 413 |
| AsuII | TTCGAA | 1 cut(s) | 78 |
| AvrII | CCTAGG | 1 cut(s) | 335 |
| BanI | GGYRCC | 1 cut(s) | 392 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BccI | CCATC | 4 cut(s) | 126, 365, 383, 387 |
| BciT130I | CCWGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 2 cut(s) | 280, 314 |
| BfaI | CTAG | 2 cut(s) | 122, 336 |
| BfoI | RGCGCY | 1 cut(s) | 396 |
| BlnI | CCTAGG | 1 cut(s) | 335 |
| Bme1390I | CCNGG | 1 cut(s) | 399 |
| BmiI | GGNNCC | 1 cut(s) | 394 |
| BmrFI | CCNGG | 1 cut(s) | 399 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 446 |
| Bpu14I | TTCGAA | 1 cut(s) | 78 |
| BsaHI | GRCGYC | 3 cut(s) | 363, 375, 393 |
| BsaJI | CCNNGG | 3 cut(s) | 335, 366, 397 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 337, 341 |
| Bse1I | ACTGG | 2 cut(s) | 28, 506 |
| BseBI | CCWGG | 1 cut(s) | 399 |
| BseDI | CCNNGG | 3 cut(s) | 335, 366, 397 |
| BseGI | GGATG | 2 cut(s) | 22, 376 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 337, 341 |
| BseMII | CTCAG | 1 cut(s) | 460 |
| BseNI | ACTGG | 2 cut(s) | 28, 506 |
| BshFI | GGCC | 2 cut(s) | 451, 484 |
| BshNI | GGYRCC | 1 cut(s) | 392 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 337, 341 |
| BsmAI | GTCTC | 2 cut(s) | 280, 314 |
| BsmBI | CGTCTC | 2 cut(s) | 280, 314 |
| BsnI | GGCC | 2 cut(s) | 451, 484 |
| Bsp119I | TTCGAA | 1 cut(s) | 78 |
| Bsp143I | GATC | 1 cut(s) | 228 |
| Bsp19I | CCATGG | 1 cut(s) | 366 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 2 cut(s) | 451, 484 |
| BspCNI | CTCAG | 1 cut(s) | 459 |
| BspLI | GGNNCC | 1 cut(s) | 394 |
| BspT104I | TTCGAA | 1 cut(s) | 78 |
| BspT107I | GGYRCC | 1 cut(s) | 392 |
| BsrI | ACTGG | 2 cut(s) | 28, 506 |
| BssECI | CCNNGG | 3 cut(s) | 335, 366, 397 |
| BssMI | GATC | 1 cut(s) | 228 |
| BssNI | GRCGYC | 3 cut(s) | 363, 375, 393 |
| BssT1I | CCWWGG | 2 cut(s) | 335, 366 |
| Bst2UI | CCWGG | 1 cut(s) | 399 |
| BstACI | GRCGYC | 3 cut(s) | 363, 375, 393 |
| BstBI | TTCGAA | 1 cut(s) | 78 |
| BstC8I | GCNNGC | 1 cut(s) | 343 |
| BstDEI | CTNAG | 2 cut(s) | 446, 479 |
| BstDSI | CCRYGG | 1 cut(s) | 366 |
| BstF5I | GGATG | 2 cut(s) | 22, 376 |
| BstH2I | RGCGCY | 1 cut(s) | 396 |
| BstHHI | GCGC | 2 cut(s) | 347, 395 |
| BstKTI | GATC | 1 cut(s) | 231 |
| BstMAI | GTCTC | 2 cut(s) | 280, 314 |
| BstMBI | GATC | 1 cut(s) | 228 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 481 |
| BstNI | CCWGG | 1 cut(s) | 399 |
| BstSCI | CCNGG | 1 cut(s) | 397 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BsuRI | GGCC | 2 cut(s) | 451, 484 |
| BtgI | CCRYGG | 1 cut(s) | 366 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 376 |
| Cac8I | GCNNGC | 1 cut(s) | 343 |
| CfoI | GCGC | 2 cut(s) | 347, 395 |
| CseI | GACGC | 3 cut(s) | 364, 371, 451 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 359, 367, 383 |
| CviJI | RGCY | 6 cut(s) | 64, 141, 334, 341, 451, 484 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 141, 334, 341, 451, 484 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 2 cut(s) | 446, 479 |
| DinI | GGCGCC | 1 cut(s) | 394 |
| DpnI | GATC | 1 cut(s) | 230 |
| DpnII | GATC | 1 cut(s) | 228 |
| Eco130I | CCWWGG | 2 cut(s) | 335, 366 |
| Eco147I | AGGCCT | 2 cut(s) | 451, 484 |
| EcoRII | CCWGG | 1 cut(s) | 397 |
| EcoT14I | CCWWGG | 2 cut(s) | 335, 366 |
| EgeI | GGCGCC | 1 cut(s) | 394 |
| EheI | GGCGCC | 1 cut(s) | 394 |
| ErhI | CCWWGG | 2 cut(s) | 335, 366 |
| Esp3I | CGTCTC | 2 cut(s) | 280, 314 |
| FaeI | CATG | 3 cut(s) | 362, 370, 386 |
| FatI | CATG | 3 cut(s) | 358, 366, 382 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 383 |
| FspBI | CTAG | 2 cut(s) | 122, 336 |
| GlaI | GCGC | 2 cut(s) | 346, 394 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 396 |
| HaeIII | GGCC | 2 cut(s) | 451, 484 |
| HgaI | GACGC | 3 cut(s) | 364, 371, 451 |
| HhaI | GCGC | 2 cut(s) | 347, 395 |
| Hin1I | GRCGYC | 3 cut(s) | 363, 375, 393 |
| Hin1II | CATG | 3 cut(s) | 362, 370, 386 |
| Hin6I | GCGC | 2 cut(s) | 345, 393 |
| HinP1I | GCGC | 2 cut(s) | 345, 393 |
| HinfI | GANTC | 4 cut(s) | 4, 20, 104, 256 |
| HphI | GGTGA | 3 cut(s) | 398, 406, 413 |
| Hpy166II | GTNNAC | 1 cut(s) | 325 |
| Hpy188I | TCNGA | 1 cut(s) | 441 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 170, 516 |
| Hpy8I | GTNNAC | 1 cut(s) | 325 |
| HpyAV | CCTTC | 4 cut(s) | 54, 277, 311, 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 315 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 481 |
| HpyF3I | CTNAG | 2 cut(s) | 446, 479 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 3 cut(s) | 363, 375, 393 |
| Hsp92II | CATG | 3 cut(s) | 362, 370, 386 |
| HspAI | GCGC | 2 cut(s) | 345, 393 |
| KasI | GGCGCC | 1 cut(s) | 392 |
| Kzo9I | GATC | 1 cut(s) | 228 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 2 cut(s) | 122, 336 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 1 cut(s) | 230 |
| MboI | GATC | 1 cut(s) | 228 |
| MboII | GAAGA | 3 cut(s) | 59, 92, 265 |
| MluCI | AATT | 3 cut(s) | 160, 212, 520 |
| Mly113I | GGCGCC | 1 cut(s) | 393 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 1 cut(s) | 152 |
| MseI | TTAA | 3 cut(s) | 198, 206, 284 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 384, 387 |
| MspR9I | CCNGG | 1 cut(s) | 399 |
| MvaI | CCWGG | 1 cut(s) | 399 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 481 |
| NarI | GGCGCC | 1 cut(s) | 393 |
| NcoI | CCATGG | 1 cut(s) | 366 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 1 cut(s) | 228 |
| NlaIII | CATG | 3 cut(s) | 362, 370, 386 |
| NlaIV | GGNNCC | 1 cut(s) | 394 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NspV | TTCGAA | 1 cut(s) | 78 |
| PceI | AGGCCT | 2 cut(s) | 451, 484 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 396 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| PshBI | ATTAAT | 1 cut(s) | 284 |
| Psp6I | CCWGG | 1 cut(s) | 397 |
| PspGI | CCWGG | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 1 cut(s) | 394 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 384, 387 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 284 |
| Sau3AI | GATC | 1 cut(s) | 228 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| ScrFI | CCNGG | 1 cut(s) | 399 |
| SetI | ASST | 5 cut(s) | 99, 123, 269, 303, 403 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfoI | GGCGCC | 1 cut(s) | 394 |
| SfuI | TTCGAA | 1 cut(s) | 78 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 384, 387 |
| Sse9I | AATT | 3 cut(s) | 160, 212, 520 |
| SseBI | AGGCCT | 2 cut(s) | 451, 484 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspDI | GGCGCC | 1 cut(s) | 392 |
| SspMI | CTAG | 2 cut(s) | 122, 336 |
| StuI | AGGCCT | 2 cut(s) | 451, 484 |
| StyD4I | CCNGG | 1 cut(s) | 397 |
| StyI | CCWWGG | 2 cut(s) | 335, 366 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 3 cut(s) | 160, 212, 520 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 284 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 284 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 2 cut(s) | 56, 60 |
| TspGWI | ACGGA | 1 cut(s) | 89 |
| VspI | ATTAAT | 1 cut(s) | 284 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 338, 386 |
| XmaJI | CCTAGG | 1 cut(s) | 335 |
| XspI | CTAG | 2 cut(s) | 122, 336 |