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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 800 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AatII | GACGTC | 2 cut(s) | 472, 673 |
| Acc36I | ACCTGC | 2 cut(s) | 800, 808 |
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 711 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AclWI | GGATC | 3 cut(s) | 296, 366, 668 |
| AcoI | YGGCCR | 1 cut(s) | 903 |
| AcyI | GRCGYC | 3 cut(s) | 469, 670, 727 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 425, 452, 832, 874, 901, 912 |
| AgsI | TTSAA | 3 cut(s) | 121, 332, 569 |
| AjnI | CCWGG | 2 cut(s) | 911, 928 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 504, 536 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 594 |
| AluI | AGCT | 3 cut(s) | 307, 317, 594 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 596 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 3 cut(s) | 296, 366, 668 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 800 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 4 cut(s) | 682, 892, 903, 914 |
| ApeKI | GCWGC | 4 cut(s) | 251, 789, 821, 943 |
| AseI | ATTAAT | 1 cut(s) | 167 |
| AspLEI | GCGC | 1 cut(s) | 711 |
| AsuC2I | CCSGG | 1 cut(s) | 731 |
| AsuHPI | GGTGA | 2 cut(s) | 522, 824 |
| BaeGI | GKGCMC | 2 cut(s) | 418, 432 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BanII | GRGCYC | 3 cut(s) | 309, 596, 615 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 596 |
| BbvI | GCAGC | 4 cut(s) | 238, 776, 808, 930 |
| BccI | CCATC | 3 cut(s) | 87, 241, 567 |
| BceAI | ACGGC | 2 cut(s) | 717, 904 |
| BciT130I | CCWGG | 2 cut(s) | 913, 930 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcnI | CCSGG | 1 cut(s) | 731 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 83, 474 |
| BfmI | CTRYAG | 2 cut(s) | 279, 807 |
| BfuAI | ACCTGC | 2 cut(s) | 800, 808 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BisI | GCNGC | 9 cut(s) | 252, 546, 712, 774, 790, 822, 865, 917, 944 |
| BlsI | GCNGC | 9 cut(s) | 253, 547, 713, 775, 791, 823, 866, 918, 945 |
| Bme1390I | CCNGG | 3 cut(s) | 731, 913, 930 |
| BmiI | GGNNCC | 2 cut(s) | 431, 934 |
| BmrFI | CCNGG | 3 cut(s) | 731, 913, 930 |
| BmsI | GCATC | 1 cut(s) | 588 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BpuMI | CCSGG | 1 cut(s) | 731 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 3 cut(s) | 469, 670, 727 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 3 cut(s) | 375, 730, 911 |
| BsaWI | WCCGGW | 2 cut(s) | 394, 657 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 425, 452, 832, 874, 901, 912 |
| Bse118I | RCCGGY | 2 cut(s) | 769, 832 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseBI | CCWGG | 2 cut(s) | 913, 930 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 3 cut(s) | 375, 730, 911 |
| BseGI | GGATG | 3 cut(s) | 345, 559, 579 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 425, 452, 832, 874, 901, 912 |
| BseRI | GAGGAG | 3 cut(s) | 667, 838, 877 |
| BseSI | GKGCMC | 2 cut(s) | 418, 432 |
| BseXI | GCAGC | 4 cut(s) | 238, 776, 808, 930 |
| BseYI | CCCAGC | 1 cut(s) | 608 |
| BsgI | GTGCAG | 1 cut(s) | 775 |
| Bsh1236I | CGCG | 1 cut(s) | 711 |
| Bsh1285I | CGRYCG | 1 cut(s) | 691 |
| BshFI | GGCC | 4 cut(s) | 684, 894, 905, 916 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiEI | CGRYCG | 1 cut(s) | 691 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 596 |
| BsiSI | CCGG | 9 cut(s) | 395, 658, 681, 719, 730, 770, 833, 891, 902 |
| BslFI | GGGAC | 2 cut(s) | 738, 896 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 425, 452, 832, 874, 901, 912 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsmFI | GGGAC | 2 cut(s) | 738, 896 |
| BsnI | GGCC | 4 cut(s) | 684, 894, 905, 916 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 5 cut(s) | 309, 418, 432, 596, 615 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspANI | GGCC | 4 cut(s) | 684, 894, 905, 916 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 711 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 431, 934 |
| BspMAI | CTGCAG | 1 cut(s) | 811 |
| BspMI | ACCTGC | 2 cut(s) | 800, 808 |
| BspPI | GGATC | 3 cut(s) | 296, 366, 668 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrFI | RCCGGY | 2 cut(s) | 769, 832 |
| BssAI | RCCGGY | 2 cut(s) | 769, 832 |
| BssECI | CCNNGG | 3 cut(s) | 375, 730, 911 |
| BssMI | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| BssNI | GRCGYC | 3 cut(s) | 469, 670, 727 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 2 cut(s) | 913, 930 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| Bst6I | CTCTTC | 2 cut(s) | 570, 867 |
| BstACI | GRCGYC | 3 cut(s) | 469, 670, 727 |
| BstC8I | GCNNGC | 4 cut(s) | 716, 771, 838, 907 |
| BstDEI | CTNAG | 3 cut(s) | 255, 420, 575 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 3 cut(s) | 345, 559, 579 |
| BstFNI | CGCG | 1 cut(s) | 711 |
| BstHHI | GCGC | 1 cut(s) | 711 |
| BstKTI | GATC | 5 cut(s) | 192, 291, 374, 663, 691 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| BstMCI | CGRYCG | 1 cut(s) | 691 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 436, 626, 681, 715, 925 |
| BstNI | CCWGG | 2 cut(s) | 913, 930 |
| BstNSI | RCATGY | 1 cut(s) | 633 |
| BstSCI | CCNGG | 3 cut(s) | 729, 911, 928 |
| BstSFI | CTRYAG | 2 cut(s) | 279, 807 |
| BstSLI | GKGCMC | 2 cut(s) | 418, 432 |
| BstUI | CGCG | 1 cut(s) | 711 |
| BstV1I | GCAGC | 4 cut(s) | 238, 776, 808, 930 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 4 cut(s) | 684, 894, 905, 916 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 345, 559, 579 |
| BveI | ACCTGC | 2 cut(s) | 800, 808 |
| Cac8I | GCNNGC | 4 cut(s) | 716, 771, 838, 907 |
| CaiI | CAGNNNCTG | 1 cut(s) | 800 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 711 |
| Cfr10I | RCCGGY | 2 cut(s) | 769, 832 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 735 |
| CviAII | CATG | 4 cut(s) | 302, 338, 376, 630 |
| DdeI | CTNAG | 3 cut(s) | 255, 420, 575 |
| DpnI | GATC | 5 cut(s) | 191, 290, 373, 662, 690 |
| DpnII | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 903 |
| Eam1104I | CTCTTC | 2 cut(s) | 570, 867 |
| EarI | CTCTTC | 2 cut(s) | 570, 867 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 594 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco24I | GRGCYC | 3 cut(s) | 309, 596, 615 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 594 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 594 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoRII | CCWGG | 2 cut(s) | 911, 928 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 3 cut(s) | 309, 596, 615 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaeI | CATG | 4 cut(s) | 305, 341, 379, 633 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FaqI | GGGAC | 2 cut(s) | 738, 896 |
| FatI | CATG | 4 cut(s) | 301, 337, 375, 629 |
| FauI | CCCGC | 3 cut(s) | 550, 613, 697 |
| Fnu4HI | GCNGC | 9 cut(s) | 252, 546, 712, 774, 790, 822, 865, 917, 944 |
| FokI | GGATG | 3 cut(s) | 332, 546, 566 |
| FriOI | GRGCYC | 3 cut(s) | 309, 596, 615 |
| Fsp4HI | GCNGC | 9 cut(s) | 252, 546, 712, 774, 790, 822, 865, 917, 944 |
| FspBI | CTAG | 2 cut(s) | 83, 474 |
| GlaI | GCGC | 1 cut(s) | 710 |
| GluI | GCNGC | 9 cut(s) | 252, 546, 712, 774, 790, 822, 865, 917, 944 |
| GsaI | CCCAGC | 1 cut(s) | 612 |
| HaeIII | GGCC | 4 cut(s) | 684, 894, 905, 916 |
| HapII | CCGG | 9 cut(s) | 395, 658, 681, 719, 730, 770, 833, 891, 902 |
| HgaI | GACGC | 1 cut(s) | 735 |
| HhaI | GCGC | 1 cut(s) | 711 |
| Hin1I | GRCGYC | 3 cut(s) | 469, 670, 727 |
| Hin1II | CATG | 4 cut(s) | 305, 341, 379, 633 |
| Hin6I | GCGC | 1 cut(s) | 709 |
| HinP1I | GCGC | 1 cut(s) | 709 |
| HinfI | GANTC | 6 cut(s) | 65, 217, 267, 398, 764, 884 |
| HpaII | CCGG | 9 cut(s) | 395, 658, 681, 719, 730, 770, 833, 891, 902 |
| HphI | GGTGA | 2 cut(s) | 522, 824 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 642, 853 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 302, 369, 395 |
| Hpy99I | CGWCG | 5 cut(s) | 672, 675, 703, 925, 928 |
| HpyAV | CCTTC | 4 cut(s) | 15, 238, 494, 598 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 469, 670 |
| HpyCH4V | TGCA | 5 cut(s) | 156, 792, 803, 809, 946 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 436, 626, 681, 715, 925 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 420, 575 |
| HpySE526I | ACGT | 3 cut(s) | 57, 469, 670 |
| Hsp92I | GRCGYC | 3 cut(s) | 469, 670, 727 |
| Hsp92II | CATG | 4 cut(s) | 305, 341, 379, 633 |
| HspAI | GCGC | 1 cut(s) | 709 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| KroI | GCCGGC | 1 cut(s) | 769 |
| KroNI | GCCGGC | 1 cut(s) | 771 |
| Kzo9I | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| LmnI | GCTCC | 2 cut(s) | 314, 680 |
| Lsp1109I | GCAGC | 4 cut(s) | 238, 776, 808, 930 |
| LweI | GCATC | 1 cut(s) | 588 |
| MaeI | CTAG | 2 cut(s) | 83, 474 |
| MaeII | ACGT | 3 cut(s) | 57, 469, 670 |
| MaeIII | GTNAC | 4 cut(s) | 62, 274, 503, 528 |
| MalI | GATC | 5 cut(s) | 191, 290, 373, 662, 690 |
| MboI | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| MboII | GAAGA | 8 cut(s) | 20, 23, 226, 367, 557, 610, 613, 884 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 5 cut(s) | 309, 418, 432, 596, 615 |
| MluCI | AATT | 5 cut(s) | 173, 364, 403, 484, 569 |
| MlyI | GAGTC | 4 cut(s) | 59, 211, 773, 878 |
| MmeI | TCCRAC | 2 cut(s) | 607, 876 |
| MreI | CGCCGGCG | 1 cut(s) | 769 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroNI | GCCGGC | 1 cut(s) | 769 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspI | CCGG | 9 cut(s) | 395, 658, 681, 719, 730, 770, 833, 891, 902 |
| MspR9I | CCNGG | 3 cut(s) | 731, 913, 930 |
| MvaI | CCWGG | 2 cut(s) | 913, 930 |
| MvnI | CGCG | 1 cut(s) | 711 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 436, 626, 681, 715, 925 |
| NaeI | GCCGGC | 1 cut(s) | 771 |
| NciI | CCSGG | 1 cut(s) | 731 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| NgoMIV | GCCGGC | 1 cut(s) | 769 |
| NlaIII | CATG | 4 cut(s) | 305, 341, 379, 633 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 934 |
| NmuCI | GTSAC | 2 cut(s) | 62, 528 |
| NspI | RCATGY | 1 cut(s) | 633 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PaqCI | CACCTGC | 1 cut(s) | 800 |
| PdiI | GCCGGC | 1 cut(s) | 771 |
| PfeI | GAWTC | 2 cut(s) | 267, 398 |
| PkrI | GCNGC | 9 cut(s) | 253, 547, 713, 775, 791, 823, 866, 918, 945 |
| Ple19I | CGATCG | 1 cut(s) | 691 |
| PleI | GAGTC | 4 cut(s) | 59, 211, 772, 878 |
| PpsI | GAGTC | 4 cut(s) | 59, 211, 772, 878 |
| PshBI | ATTAAT | 1 cut(s) | 167 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 596 |
| Psp6I | CCWGG | 2 cut(s) | 911, 928 |
| PspFI | CCCAGC | 1 cut(s) | 608 |
| PspGI | CCWGG | 2 cut(s) | 911, 928 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 934 |
| PstI | CTGCAG | 1 cut(s) | 811 |
| PstNI | CAGNNNCTG | 1 cut(s) | 800 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| PvuI | CGATCG | 1 cut(s) | 691 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SacI | GAGCTC | 2 cut(s) | 309, 596 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| SatI | GCNGC | 9 cut(s) | 252, 546, 712, 774, 790, 822, 865, 917, 944 |
| Sau3AI | GATC | 5 cut(s) | 189, 288, 371, 660, 688 |
| SchI | GAGTC | 4 cut(s) | 59, 211, 773, 878 |
| ScrFI | CCNGG | 3 cut(s) | 731, 913, 930 |
| SduI | GDGCHC | 5 cut(s) | 309, 418, 432, 596, 615 |
| SfaNI | GCATC | 1 cut(s) | 588 |
| SfcI | CTRYAG | 2 cut(s) | 279, 807 |
| SgrAI | CRCCGGYG | 1 cut(s) | 769 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| Sse9I | AATT | 5 cut(s) | 173, 364, 403, 484, 569 |
| SspI | AATATT | 1 cut(s) | 48 |
| SspMI | CTAG | 2 cut(s) | 83, 474 |
| SstI | GAGCTC | 2 cut(s) | 309, 596 |
| StyD4I | CCNGG | 3 cut(s) | 729, 911, 928 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaiI | ACGT | 3 cut(s) | 60, 472, 673 |
| TaqI | TCGA | 9 cut(s) | 265, 270, 368, 596, 667, 687, 691, 698, 858 |
| TasI | AATT | 5 cut(s) | 173, 364, 403, 484, 569 |
| TauI | GCSGC | 5 cut(s) | 548, 714, 776, 867, 919 |
| TfiI | GAWTC | 2 cut(s) | 267, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 2 cut(s) | 62, 528 |
| TseI | GCWGC | 4 cut(s) | 251, 789, 821, 943 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 528 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 185, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 50, 301 |
| VspI | ATTAAT | 1 cut(s) | 167 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XceI | RCATGY | 1 cut(s) | 633 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 876 |
| XspI | CTAG | 2 cut(s) | 83, 474 |
| ZraI | GACGTC | 2 cut(s) | 470, 671 |