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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 293, 334 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 1 cut(s) | 435 |
| AclWI | GGATC | 1 cut(s) | 198 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 2 cut(s) | 294, 335 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 257 |
| AgsI | TTSAA | 1 cut(s) | 331 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 416, 467 |
| AluI | AGCT | 4 cut(s) | 139, 149, 416, 467 |
| Alw21I | GWGCWC | 1 cut(s) | 418 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 1 cut(s) | 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 296, 337 |
| AsuHPI | GGTGA | 1 cut(s) | 424 |
| BaeGI | GKGCMC | 1 cut(s) | 403 |
| BanI | GGYRCC | 2 cut(s) | 293, 334 |
| BanII | GRGCYC | 1 cut(s) | 418 |
| BauI | CACGAG | 1 cut(s) | 417 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 1 cut(s) | 418 |
| BccI | CCATC | 2 cut(s) | 73, 321 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 503 |
| BfoI | RGCGCY | 2 cut(s) | 297, 338 |
| BmiI | GGNNCC | 2 cut(s) | 295, 336 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 2 cut(s) | 294, 335 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BseRI | GAGGAG | 1 cut(s) | 273 |
| BseSI | GKGCMC | 1 cut(s) | 403 |
| BshNI | GGYRCC | 2 cut(s) | 293, 334 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 418 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 257 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| Bsp1286I | GDGCHC | 2 cut(s) | 403, 418 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| BspACI | CCGC | 1 cut(s) | 435 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspLI | GGNNCC | 2 cut(s) | 295, 336 |
| BspPI | GGATC | 1 cut(s) | 198 |
| BspT107I | GGYRCC | 2 cut(s) | 293, 334 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| BssNI | GRCGYC | 2 cut(s) | 294, 335 |
| BssSI | CACGAG | 1 cut(s) | 417 |
| Bst2BI | CACGAG | 1 cut(s) | 417 |
| BstACI | GRCGYC | 2 cut(s) | 294, 335 |
| BstDEI | CTNAG | 2 cut(s) | 87, 306 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstH2I | RGCGCY | 2 cut(s) | 297, 338 |
| BstHHI | GCGC | 2 cut(s) | 296, 337 |
| BstKTI | GATC | 5 cut(s) | 24, 206, 394, 490, 502 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 443, 464 |
| BstNSI | RCATGY | 1 cut(s) | 287 |
| BstSLI | GKGCMC | 1 cut(s) | 403 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| CfoI | GCGC | 2 cut(s) | 296, 337 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CviAII | CATG | 2 cut(s) | 170, 284 |
| CviJI | RGCY | 5 cut(s) | 139, 149, 312, 416, 467 |
| CviKI_1 | RGCY | 5 cut(s) | 139, 149, 312, 416, 467 |
| DdeI | CTNAG | 2 cut(s) | 87, 306 |
| DinI | GGCGCC | 2 cut(s) | 295, 336 |
| DpnI | GATC | 5 cut(s) | 23, 205, 393, 489, 501 |
| DpnII | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| Ecl136II | GAGCTC | 1 cut(s) | 416 |
| Eco24I | GRGCYC | 1 cut(s) | 418 |
| Eco53kI | GAGCTC | 1 cut(s) | 416 |
| EcoICRI | GAGCTC | 1 cut(s) | 416 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT38I | GRGCYC | 1 cut(s) | 418 |
| EgeI | GGCGCC | 2 cut(s) | 295, 336 |
| EheI | GGCGCC | 2 cut(s) | 295, 336 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 2 cut(s) | 173, 287 |
| FatI | CATG | 2 cut(s) | 169, 283 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| FokI | GGATG | 1 cut(s) | 164 |
| FriOI | GRGCYC | 1 cut(s) | 418 |
| FspBI | CTAG | 1 cut(s) | 503 |
| GlaI | GCGC | 2 cut(s) | 295, 336 |
| HaeII | RGCGCY | 2 cut(s) | 297, 338 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 2 cut(s) | 296, 337 |
| Hin1I | GRCGYC | 2 cut(s) | 294, 335 |
| Hin1II | CATG | 2 cut(s) | 173, 287 |
| Hin6I | GCGC | 2 cut(s) | 294, 335 |
| HinP1I | GCGC | 2 cut(s) | 294, 335 |
| HinfI | GANTC | 3 cut(s) | 49, 120, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 424 |
| Hpy188I | TCNGA | 1 cut(s) | 391 |
| Hpy188III | TCNNGA | 6 cut(s) | 201, 227, 375, 419, 491, 503 |
| HpyCH4V | TGCA | 2 cut(s) | 74, 113 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 443, 464 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 306 |
| Hsp92I | GRCGYC | 2 cut(s) | 294, 335 |
| Hsp92II | CATG | 2 cut(s) | 173, 287 |
| HspAI | GCGC | 2 cut(s) | 294, 335 |
| KasI | GGCGCC | 2 cut(s) | 293, 334 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| Kzo9I | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 2 cut(s) | 240, 264 |
| MaeI | CTAG | 1 cut(s) | 503 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 5 cut(s) | 23, 205, 393, 489, 501 |
| MboI | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| MboII | GAAGA | 4 cut(s) | 58, 434, 497, 506 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 2 cut(s) | 403, 418 |
| MluCI | AATT | 4 cut(s) | 5, 196, 235, 426 |
| Mly113I | GGCGCC | 2 cut(s) | 294, 335 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 6 cut(s) | 180, 251, 256, 260, 286, 348 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MslI | CAYNNNNRTG | 3 cut(s) | 182, 288, 318 |
| MspI | CCGG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 443, 464 |
| NarI | GGCGCC | 2 cut(s) | 294, 335 |
| NdeII | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| NlaIII | CATG | 2 cut(s) | 173, 287 |
| NlaIV | GGNNCC | 2 cut(s) | 295, 336 |
| NspI | RCATGY | 1 cut(s) | 287 |
| PfeI | GAWTC | 2 cut(s) | 120, 230 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PluTI | GGCGCC | 2 cut(s) | 297, 338 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 1 cut(s) | 418 |
| PspN4I | GGNNCC | 2 cut(s) | 295, 336 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 3 cut(s) | 182, 288, 318 |
| SacI | GAGCTC | 1 cut(s) | 418 |
| Sau3AI | GATC | 5 cut(s) | 21, 203, 391, 487, 499 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 2 cut(s) | 403, 418 |
| SetI | ASST | 5 cut(s) | 131, 141, 151, 418, 469 |
| SfoI | GGCGCC | 2 cut(s) | 295, 336 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 182, 288, 318 |
| Sse9I | AATT | 4 cut(s) | 5, 196, 235, 426 |
| SsiI | CCGC | 1 cut(s) | 435 |
| SspDI | GGCGCC | 2 cut(s) | 293, 334 |
| SspI | AATATT | 1 cut(s) | 223 |
| SspMI | CTAG | 1 cut(s) | 503 |
| SstI | GAGCTC | 1 cut(s) | 418 |
| TaqI | TCGA | 3 cut(s) | 102, 200, 376 |
| TasI | AATT | 4 cut(s) | 5, 196, 235, 426 |
| TfiI | GAWTC | 2 cut(s) | 120, 230 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 1 cut(s) | 196 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 502 |
| XceI | RCATGY | 1 cut(s) | 287 |
| XspI | CTAG | 1 cut(s) | 503 |