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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 563 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AciI | CCGC | 3 cut(s) | 79, 361, 705 |
| AclWI | GGATC | 2 cut(s) | 512, 798 |
| AcoI | YGGCCR | 1 cut(s) | 550 |
| AcsI | RAATTY | 1 cut(s) | 389 |
| AcyI | GRCGYC | 1 cut(s) | 564 |
| AdeI | CACNNNGTG | 1 cut(s) | 736 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 806 |
| AgsI | TTSAA | 2 cut(s) | 376, 601 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 686, 728 |
| AluI | AGCT | 4 cut(s) | 155, 161, 686, 728 |
| Alw21I | GWGCWC | 1 cut(s) | 688 |
| Alw26I | GTCTC | 2 cut(s) | 292, 457 |
| AlwI | GGATC | 2 cut(s) | 512, 798 |
| AoxI | GGCC | 1 cut(s) | 550 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 389 |
| AspLEI | GCGC | 2 cut(s) | 566, 607 |
| AsuHPI | GGTGA | 1 cut(s) | 694 |
| AsuII | TTCGAA | 1 cut(s) | 624 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BalI | TGGCCA | 1 cut(s) | 552 |
| BanI | GGYRCC | 1 cut(s) | 563 |
| BanII | GRGCYC | 1 cut(s) | 688 |
| BauI | CACGAG | 1 cut(s) | 687 |
| BbsI | GAAGAC | 3 cut(s) | 273, 437, 786 |
| Bbv12I | GWGCWC | 1 cut(s) | 688 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 342, 457 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 476, 510 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 292, 457 |
| BfaI | CTAG | 3 cut(s) | 126, 338, 764 |
| BfmI | CTRYAG | 2 cut(s) | 96, 144 |
| BfoI | RGCGCY | 2 cut(s) | 567, 608 |
| BglII | AGATCT | 1 cut(s) | 766 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 565 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 403 |
| BpiI | GAAGAC | 3 cut(s) | 273, 437, 786 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu14I | TTCGAA | 1 cut(s) | 624 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 486 |
| BsaBI | GATNNNNATC | 1 cut(s) | 765 |
| BsaHI | GRCGYC | 1 cut(s) | 564 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 806 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 547 |
| Bse8I | GATNNNNATC | 1 cut(s) | 765 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 486 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseJI | GATNNNNATC | 1 cut(s) | 765 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 806 |
| BseMI | GCAATG | 1 cut(s) | 547 |
| BseMII | CTCAG | 1 cut(s) | 651 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 552 |
| BshNI | GGYRCC | 1 cut(s) | 563 |
| BshVI | ATCGAT | 1 cut(s) | 486 |
| BsiHKAI | GWGCWC | 1 cut(s) | 688 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 806 |
| BsmAI | GTCTC | 2 cut(s) | 292, 457 |
| BsmBI | CGTCTC | 1 cut(s) | 457 |
| BsnI | GGCC | 1 cut(s) | 552 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp119I | TTCGAA | 1 cut(s) | 624 |
| Bsp1286I | GDGCHC | 2 cut(s) | 673, 688 |
| Bsp143I | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 705 |
| BspANI | GGCC | 1 cut(s) | 552 |
| BspCNI | CTCAG | 1 cut(s) | 652 |
| BspDI | ATCGAT | 1 cut(s) | 486 |
| BspLI | GGNNCC | 1 cut(s) | 565 |
| BspPI | GGATC | 2 cut(s) | 512, 798 |
| BspT104I | TTCGAA | 1 cut(s) | 624 |
| BspT107I | GGYRCC | 1 cut(s) | 563 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 547 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| BssNI | GRCGYC | 1 cut(s) | 564 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 564 |
| BstBI | TTCGAA | 1 cut(s) | 624 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 5 cut(s) | 184, 471, 576, 660, 770 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstH2I | RGCGCY | 2 cut(s) | 567, 608 |
| BstHHI | GCGC | 2 cut(s) | 566, 607 |
| BstKTI | GATC | 6 cut(s) | 408, 507, 751, 763, 769, 793 |
| BstMAI | GTCTC | 2 cut(s) | 292, 457 |
| BstMBI | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 602, 725 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 2 cut(s) | 96, 144 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 437, 786 |
| BstX2I | RGATCY | 1 cut(s) | 766 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 766 |
| Bsu15I | ATCGAT | 1 cut(s) | 486 |
| BsuRI | GGCC | 1 cut(s) | 552 |
| BsuTUI | ATCGAT | 1 cut(s) | 486 |
| BtgZI | GCGATG | 1 cut(s) | 431 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CfoI | GCGC | 2 cut(s) | 566, 607 |
| ClaI | ATCGAT | 1 cut(s) | 486 |
| CseI | GACGC | 1 cut(s) | 602 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 554 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 5 cut(s) | 184, 471, 576, 660, 770 |
| DinI | GGCGCC | 1 cut(s) | 565 |
| DpnI | GATC | 6 cut(s) | 407, 506, 750, 762, 768, 792 |
| DpnII | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| DraIII | CACNNNGTG | 1 cut(s) | 736 |
| EaeI | YGGCCR | 1 cut(s) | 550 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 686 |
| Eco24I | GRGCYC | 1 cut(s) | 688 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 686 |
| EcoICRI | GAGCTC | 1 cut(s) | 686 |
| EcoRI | GAATTC | 1 cut(s) | 389 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 688 |
| EgeI | GGCGCC | 1 cut(s) | 565 |
| EheI | GGCGCC | 1 cut(s) | 565 |
| Esp3I | CGTCTC | 1 cut(s) | 457 |
| FaeI | CATG | 1 cut(s) | 557 |
| FaiI | YATR | 9 cut(s) | 228, 230, 255, 257, 354, 555, 640, 709, 735 |
| FatI | CATG | 1 cut(s) | 553 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 688 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 338, 764 |
| GlaI | GCGC | 2 cut(s) | 565, 606 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 567, 608 |
| HaeIII | GGCC | 1 cut(s) | 552 |
| HgaI | GACGC | 1 cut(s) | 602 |
| HhaI | GCGC | 2 cut(s) | 566, 607 |
| Hin1I | GRCGYC | 1 cut(s) | 564 |
| Hin1II | CATG | 1 cut(s) | 557 |
| Hin6I | GCGC | 2 cut(s) | 564, 605 |
| HinP1I | GCGC | 2 cut(s) | 564, 605 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 320, 433, 483, 580 |
| HphI | GGTGA | 1 cut(s) | 694 |
| Hpy166II | GTNNAC | 1 cut(s) | 518 |
| Hpy188I | TCNGA | 1 cut(s) | 661 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 119, 332, 645, 689, 752, 764, 794 |
| Hpy8I | GTNNAC | 1 cut(s) | 518 |
| Hpy99I | CGWCG | 1 cut(s) | 596 |
| HpyAV | CCTTC | 2 cut(s) | 270, 454 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 520 |
| HpyCH4V | TGCA | 2 cut(s) | 458, 497 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 602, 725 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 471, 576, 660, 770 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 520 |
| Hsp92I | GRCGYC | 1 cut(s) | 564 |
| Hsp92II | CATG | 1 cut(s) | 557 |
| HspAI | GCGC | 2 cut(s) | 564, 605 |
| KasI | GGCGCC | 1 cut(s) | 563 |
| Kzo9I | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 403 |
| MaeI | CTAG | 3 cut(s) | 126, 338, 764 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 520 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 700 |
| MalI | GATC | 6 cut(s) | 407, 506, 750, 762, 768, 792 |
| MboI | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| MboII | GAAGA | 7 cut(s) | 275, 278, 308, 442, 704, 758, 791 |
| MflI | RGATCY | 1 cut(s) | 766 |
| MhlI | GDGCHC | 2 cut(s) | 673, 688 |
| MlsI | TGGCCA | 1 cut(s) | 552 |
| MluCI | AATT | 3 cut(s) | 17, 389, 804 |
| MluNI | TGGCCA | 1 cut(s) | 552 |
| Mly113I | GGCGCC | 1 cut(s) | 564 |
| MlyI | GAGTC | 4 cut(s) | 214, 314, 427, 589 |
| MnlI | CCTC | 7 cut(s) | 181, 368, 506, 526, 530, 556, 618 |
| Mox20I | TGGCCA | 1 cut(s) | 552 |
| MscI | TGGCCA | 1 cut(s) | 552 |
| MseI | TTAA | 1 cut(s) | 820 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 558 |
| Msp20I | TGGCCA | 1 cut(s) | 552 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 602, 725 |
| NarI | GGCGCC | 1 cut(s) | 564 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| NlaIII | CATG | 1 cut(s) | 557 |
| NlaIV | GGNNCC | 1 cut(s) | 565 |
| NmuCI | GTSAC | 2 cut(s) | 317, 700 |
| NspV | TTCGAA | 1 cut(s) | 624 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 483 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 214, 314, 427, 588 |
| PluTI | GGCGCC | 1 cut(s) | 567 |
| PpsI | GAGTC | 4 cut(s) | 214, 314, 427, 588 |
| Psp124BI | GAGCTC | 1 cut(s) | 688 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 565 |
| PsuI | RGATCY | 1 cut(s) | 766 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 558 |
| SacI | GAGCTC | 1 cut(s) | 688 |
| SaqAI | TTAA | 1 cut(s) | 820 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 6 cut(s) | 405, 504, 748, 760, 766, 790 |
| SchI | GAGTC | 4 cut(s) | 214, 314, 427, 589 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 673, 688 |
| SfaNI | GCATC | 2 cut(s) | 94, 403 |
| SfcI | CTRYAG | 2 cut(s) | 96, 144 |
| SfoI | GGCGCC | 1 cut(s) | 565 |
| SfuI | TTCGAA | 1 cut(s) | 624 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 558 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 389, 804 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 705 |
| SspDI | GGCGCC | 1 cut(s) | 563 |
| SspMI | CTAG | 3 cut(s) | 126, 338, 764 |
| SstI | GAGCTC | 1 cut(s) | 688 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 523 |
| TaqI | TCGA | 5 cut(s) | 294, 481, 486, 624, 646 |
| TasI | AATT | 3 cut(s) | 17, 389, 804 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 483 |
| Tru1I | TTAA | 1 cut(s) | 820 |
| Tru9I | TTAA | 1 cut(s) | 820 |
| TseFI | GTSAC | 2 cut(s) | 317, 700 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 700 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 2 cut(s) | 305, 517 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| XapI | RAATTY | 1 cut(s) | 389 |
| XbaI | TCTAGA | 1 cut(s) | 763 |
| XspI | CTAG | 3 cut(s) | 126, 338, 764 |