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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclWI | GGATC | 2 cut(s) | 335, 405 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 464 |
| AgsI | TTSAA | 2 cut(s) | 160, 371 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 68 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 2 cut(s) | 335, 405 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AseI | ATTAAT | 1 cut(s) | 206 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 455 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 3 cut(s) | 57, 67, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BccI | CCATC | 2 cut(s) | 126, 280 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 68 |
| BpiI | GAAGAC | 3 cut(s) | 57, 67, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 464 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 22, 384 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 464 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 464 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp143I | GATC | 3 cut(s) | 228, 327, 410 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspPI | GGATC | 2 cut(s) | 335, 405 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 3 cut(s) | 228, 327, 410 |
| Bst4CI | ACNGT | 1 cut(s) | 66 |
| BstDEI | CTNAG | 1 cut(s) | 294 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 2 cut(s) | 22, 384 |
| BstHHI | GCGC | 1 cut(s) | 455 |
| BstKTI | GATC | 3 cut(s) | 231, 330, 413 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 3 cut(s) | 228, 327, 410 |
| BstV2I | GAAGAC | 3 cut(s) | 57, 67, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 384 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 455 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 2 cut(s) | 341, 377 |
| CviJI | RGCY | 2 cut(s) | 346, 356 |
| CviKI_1 | RGCY | 2 cut(s) | 346, 356 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 1 cut(s) | 294 |
| DpnI | GATC | 3 cut(s) | 230, 329, 412 |
| DpnII | GATC | 3 cut(s) | 228, 327, 410 |
| DriI | GACNNNNNGTC | 1 cut(s) | 68 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 2 cut(s) | 344, 380 |
| FaiI | YATR | 9 cut(s) | 12, 14, 41, 342, 359, 378, 402, 429, 447 |
| FatI | CATG | 2 cut(s) | 340, 376 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 371 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 1 cut(s) | 454 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 434 |
| HhaI | GCGC | 1 cut(s) | 455 |
| Hin1II | CATG | 2 cut(s) | 344, 380 |
| Hin6I | GCGC | 1 cut(s) | 453 |
| HinP1I | GCGC | 1 cut(s) | 453 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 104, 256, 437 |
| HpaII | CCGG | 1 cut(s) | 434 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 4 cut(s) | 116, 341, 408, 434 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 66 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 320 |
| HpyF3I | CTNAG | 1 cut(s) | 294 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92II | CATG | 2 cut(s) | 344, 380 |
| HspAI | GCGC | 1 cut(s) | 453 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Kzo9I | GATC | 3 cut(s) | 228, 327, 410 |
| LmnI | GCTCC | 2 cut(s) | 30, 460 |
| LpnPI | CCDG | 4 cut(s) | 41, 70, 129, 447 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 2 cut(s) | 101, 313 |
| MalI | GATC | 3 cut(s) | 230, 329, 412 |
| MboI | GATC | 3 cut(s) | 228, 327, 410 |
| MboII | GAAGA | 6 cut(s) | 59, 62, 72, 92, 265, 406 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MluCI | AATT | 4 cut(s) | 212, 306, 403, 442 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 2 cut(s) | 152, 458 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| MspI | CCGG | 1 cut(s) | 434 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 327, 410 |
| NlaIII | CATG | 2 cut(s) | 344, 380 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 20, 437 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| PshBI | ATTAAT | 1 cut(s) | 206 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 412, 444 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 228, 327, 410 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SetI | ASST | 8 cut(s) | 99, 123, 144, 269, 302, 338, 348, 358 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| Sse9I | AATT | 4 cut(s) | 212, 306, 403, 442 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| TaaI | ACNGT | 1 cut(s) | 66 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 3 cut(s) | 78, 304, 407 |
| TasI | AATT | 4 cut(s) | 212, 306, 403, 442 |
| TfiI | GAWTC | 2 cut(s) | 20, 437 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 340, 403 |
| VspI | ATTAAT | 1 cut(s) | 206 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 122 |