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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 309 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 413 |
| AccBSI | CCGCTC | 1 cut(s) | 274 |
| AccI | GTMKAC | 1 cut(s) | 158 |
| AciI | CCGC | 3 cut(s) | 274, 322, 423 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcvI | CACGTG | 1 cut(s) | 365 |
| AfaI | GTAC | 2 cut(s) | 110, 217 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 331, 413 |
| AflIII | ACRYGT | 1 cut(s) | 362 |
| AgsI | TTSAA | 1 cut(s) | 204 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 2 cut(s) | 397, 406 |
| AluBI | AGCT | 3 cut(s) | 40, 142, 164 |
| AluI | AGCT | 3 cut(s) | 40, 142, 164 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 1 cut(s) | 131 |
| AoxI | GGCC | 1 cut(s) | 394 |
| AseI | ATTAAT | 1 cut(s) | 147 |
| AspLEI | GCGC | 1 cut(s) | 267 |
| AspS9I | GGNCC | 3 cut(s) | 311, 395, 419 |
| AvaII | GGWCC | 2 cut(s) | 311, 419 |
| BanII | GRGCYC | 1 cut(s) | 406 |
| BauI | CACGAG | 3 cut(s) | 127, 185, 230 |
| BbrPI | CACGTG | 1 cut(s) | 365 |
| BciT130I | CCWGG | 2 cut(s) | 399, 408 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| Bme1390I | CCNGG | 2 cut(s) | 399, 408 |
| Bme18I | GGWCC | 2 cut(s) | 311, 419 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 3 cut(s) | 311, 395, 419 |
| BmiI | GGNNCC | 3 cut(s) | 278, 405, 421 |
| BmrFI | CCNGG | 2 cut(s) | 399, 408 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| BsaAI | YACGTR | 1 cut(s) | 365 |
| BsaJI | CCNNGG | 2 cut(s) | 397, 398 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 331, 413 |
| BseBI | CCWGG | 2 cut(s) | 399, 408 |
| BseDI | CCNNGG | 2 cut(s) | 397, 398 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 331, 413 |
| BseMII | CTCAG | 2 cut(s) | 87, 156 |
| BseRI | GAGGAG | 1 cut(s) | 405 |
| BshFI | GGCC | 1 cut(s) | 396 |
| BslFI | GGGAC | 1 cut(s) | 306 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 331, 413 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 1 cut(s) | 306 |
| BsnI | GGCC | 1 cut(s) | 396 |
| Bsp1286I | GDGCHC | 1 cut(s) | 406 |
| Bsp143I | GATC | 1 cut(s) | 123 |
| BspACI | CCGC | 3 cut(s) | 274, 322, 423 |
| BspANI | GGCC | 1 cut(s) | 396 |
| BspCNI | CTCAG | 2 cut(s) | 86, 157 |
| BspLI | GGNNCC | 3 cut(s) | 278, 405, 421 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BsrBI | CCGCTC | 1 cut(s) | 274 |
| BssECI | CCNNGG | 2 cut(s) | 397, 398 |
| BssMI | GATC | 1 cut(s) | 123 |
| BssSI | CACGAG | 3 cut(s) | 127, 185, 230 |
| Bst2BI | CACGAG | 3 cut(s) | 127, 185, 230 |
| Bst2UI | CCWGG | 2 cut(s) | 399, 408 |
| BstBAI | YACGTR | 1 cut(s) | 365 |
| BstDEI | CTNAG | 3 cut(s) | 73, 165, 219 |
| BstHHI | GCGC | 1 cut(s) | 267 |
| BstKTI | GATC | 1 cut(s) | 126 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 271 |
| BstNI | CCWGG | 2 cut(s) | 399, 408 |
| BstSCI | CCNGG | 2 cut(s) | 397, 406 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BsuRI | GGCC | 1 cut(s) | 396 |
| CfoI | GCGC | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 3 cut(s) | 311, 395, 419 |
| Csp6I | GTAC | 2 cut(s) | 109, 216 |
| CviAII | CATG | 4 cut(s) | 154, 173, 375, 383 |
| CviJI | RGCY | 7 cut(s) | 22, 40, 142, 164, 208, 396, 404 |
| CviKI_1 | RGCY | 7 cut(s) | 22, 40, 142, 164, 208, 396, 404 |
| CviQI | GTAC | 2 cut(s) | 109, 216 |
| DdeI | CTNAG | 3 cut(s) | 73, 165, 219 |
| DpnI | GATC | 1 cut(s) | 125 |
| DpnII | GATC | 1 cut(s) | 123 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 309 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 309 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco24I | GRGCYC | 1 cut(s) | 406 |
| Eco47I | GGWCC | 2 cut(s) | 311, 419 |
| Eco72I | CACGTG | 1 cut(s) | 365 |
| EcoO109I | RGGNCCY | 2 cut(s) | 395, 419 |
| EcoRII | CCWGG | 2 cut(s) | 397, 406 |
| EcoT38I | GRGCYC | 1 cut(s) | 406 |
| FaeI | CATG | 4 cut(s) | 157, 176, 378, 386 |
| FaqI | GGGAC | 1 cut(s) | 306 |
| FatI | CATG | 4 cut(s) | 153, 172, 374, 382 |
| FblI | GTMKAC | 1 cut(s) | 158 |
| FriOI | GRGCYC | 1 cut(s) | 406 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GlaI | GCGC | 1 cut(s) | 266 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeIII | GGCC | 1 cut(s) | 396 |
| HhaI | GCGC | 1 cut(s) | 267 |
| Hin1II | CATG | 4 cut(s) | 157, 176, 378, 386 |
| Hin6I | GCGC | 1 cut(s) | 265 |
| HinP1I | GCGC | 1 cut(s) | 265 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 159, 229 |
| Hpy188III | TCNNGA | 3 cut(s) | 127, 187, 230 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 159, 229 |
| HpyAV | CCTTC | 3 cut(s) | 73, 329, 347 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 364 |
| HpyCH4V | TGCA | 1 cut(s) | 251 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 271 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 165, 219 |
| HpySE526I | ACGT | 2 cut(s) | 304, 364 |
| Hsp92II | CATG | 4 cut(s) | 157, 176, 378, 386 |
| HspAI | GCGC | 1 cut(s) | 265 |
| Kzo9I | GATC | 1 cut(s) | 123 |
| LmnI | GCTCC | 2 cut(s) | 271, 409 |
| LpnPI | CCDG | 5 cut(s) | 81, 384, 393, 411, 420 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeII | ACGT | 2 cut(s) | 304, 364 |
| MalI | GATC | 1 cut(s) | 125 |
| MbiI | CCGCTC | 1 cut(s) | 274 |
| MboI | GATC | 1 cut(s) | 123 |
| MboII | GAAGA | 1 cut(s) | 202 |
| MhlI | GDGCHC | 1 cut(s) | 406 |
| MluCI | AATT | 7 cut(s) | 42, 78, 144, 193, 199, 238, 285 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 8 cut(s) | 65, 95, 123, 194, 226, 383, 386, 410 |
| MseI | TTAA | 2 cut(s) | 147, 288 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspR9I | CCNGG | 2 cut(s) | 399, 408 |
| MvaI | CCWGG | 2 cut(s) | 399, 408 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 271 |
| NdeII | GATC | 1 cut(s) | 123 |
| NlaIII | CATG | 4 cut(s) | 157, 176, 378, 386 |
| NlaIV | GGNNCC | 3 cut(s) | 278, 405, 421 |
| PasI | CCCWGGG | 1 cut(s) | 398 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 413 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PmaCI | CACGTG | 1 cut(s) | 365 |
| PmlI | CACGTG | 1 cut(s) | 365 |
| Ppu21I | YACGTR | 1 cut(s) | 365 |
| PpuMI | RGGWCCY | 1 cut(s) | 419 |
| PshBI | ATTAAT | 1 cut(s) | 147 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 419 |
| Psp6I | CCWGG | 2 cut(s) | 397, 406 |
| PspCI | CACGTG | 1 cut(s) | 365 |
| PspGI | CCWGG | 2 cut(s) | 397, 406 |
| PspN4I | GGNNCC | 3 cut(s) | 278, 405, 421 |
| PspPI | GGNCC | 3 cut(s) | 311, 395, 419 |
| PspPPI | RGGWCCY | 1 cut(s) | 419 |
| PvuII | CAGCTG | 1 cut(s) | 164 |
| RsaI | GTAC | 2 cut(s) | 110, 217 |
| RsaNI | GTAC | 2 cut(s) | 109, 216 |
| SaqAI | TTAA | 2 cut(s) | 147, 288 |
| Sau3AI | GATC | 1 cut(s) | 123 |
| Sau96I | GGNCC | 3 cut(s) | 311, 395, 419 |
| ScrFI | CCNGG | 2 cut(s) | 399, 408 |
| SduI | GDGCHC | 1 cut(s) | 406 |
| SetI | ASST | 9 cut(s) | 42, 65, 106, 134, 144, 166, 307, 340, 367 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SinI | GGWCC | 2 cut(s) | 311, 419 |
| Sse9I | AATT | 7 cut(s) | 42, 78, 144, 193, 199, 238, 285 |
| SsiI | CCGC | 3 cut(s) | 274, 322, 423 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 2 cut(s) | 397, 406 |
| TaiI | ACGT | 2 cut(s) | 307, 367 |
| TasI | AATT | 7 cut(s) | 42, 78, 144, 193, 199, 238, 285 |
| TatI | WGTACW | 1 cut(s) | 108 |
| Tru1I | TTAA | 2 cut(s) | 147, 288 |
| Tru9I | TTAA | 2 cut(s) | 147, 288 |
| TspDTI | ATGAA | 2 cut(s) | 125, 366 |
| TspGWI | ACGGA | 2 cut(s) | 136, 315 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 413 |
| VpaK11BI | GGWCC | 2 cut(s) | 311, 419 |
| VspI | ATTAAT | 1 cut(s) | 147 |
| XmiI | GTMKAC | 1 cut(s) | 158 |
| XspI | CTAG | 1 cut(s) | 327 |