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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 165 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccII | CGCG | 1 cut(s) | 441 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 2 cut(s) | 133, 591 |
| AclI | AACGTT | 1 cut(s) | 84 |
| AcoI | YGGCCR | 1 cut(s) | 208 |
| AcyI | GRCGYC | 2 cut(s) | 342, 615 |
| AfaI | GTAC | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| AflIII | ACRYGT | 1 cut(s) | 571 |
| AgsI | TTSAA | 4 cut(s) | 62, 148, 282, 683 |
| AluBI | AGCT | 3 cut(s) | 52, 334, 356 |
| AluI | AGCT | 3 cut(s) | 52, 334, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 553 |
| Alw26I | GTCTC | 2 cut(s) | 195, 268 |
| Alw44I | GTGCAC | 1 cut(s) | 549 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| AoxI | GGCC | 1 cut(s) | 208 |
| ApaLI | GTGCAC | 1 cut(s) | 549 |
| ApeKI | GCWGC | 1 cut(s) | 70 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 2 cut(s) | 344, 443 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 1 cut(s) | 623 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BaeGI | GKGCMC | 1 cut(s) | 553 |
| BalI | TGGCCA | 1 cut(s) | 210 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BauI | CACGAG | 2 cut(s) | 319, 377 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| Bbv12I | GWGCWC | 1 cut(s) | 553 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 3 cut(s) | 114, 190, 602 |
| BcoDI | GTCTC | 2 cut(s) | 195, 268 |
| BfaI | CTAG | 1 cut(s) | 396 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BfoI | RGCGCY | 1 cut(s) | 345 |
| BisI | GCNGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 72 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 5 cut(s) | 174, 343, 557, 595, 672 |
| BmsI | GCATC | 1 cut(s) | 665 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 1 cut(s) | 233 |
| BsaHI | GRCGYC | 2 cut(s) | 342, 615 |
| BsaJI | CCNNGG | 3 cut(s) | 402, 447, 559 |
| BsaWI | WCCGGW | 2 cut(s) | 421, 599 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| Bse8I | GATNNNNATC | 1 cut(s) | 233 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseDI | CCNNGG | 3 cut(s) | 402, 447, 559 |
| BseJI | GATNNNNATC | 1 cut(s) | 233 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| BseSI | GKGCMC | 1 cut(s) | 553 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshFI | GGCC | 1 cut(s) | 210 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 553 |
| BsiSI | CCGG | 2 cut(s) | 422, 600 |
| BslFI | GGGAC | 1 cut(s) | 497 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| BsmAI | GTCTC | 2 cut(s) | 195, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 497 |
| BsnI | GGCC | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 553 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 2 cut(s) | 234, 662 |
| BspACI | CCGC | 2 cut(s) | 133, 591 |
| BspANI | GGCC | 1 cut(s) | 210 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 5 cut(s) | 174, 343, 557, 595, 672 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BssECI | CCNNGG | 3 cut(s) | 402, 447, 559 |
| BssMI | GATC | 2 cut(s) | 234, 662 |
| BssNI | GRCGYC | 2 cut(s) | 342, 615 |
| BssSI | CACGAG | 2 cut(s) | 319, 377 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst2BI | CACGAG | 2 cut(s) | 319, 377 |
| Bst4CI | ACNGT | 1 cut(s) | 560 |
| Bst6I | CTCTTC | 2 cut(s) | 183, 572 |
| BstACI | GRCGYC | 2 cut(s) | 342, 615 |
| BstC8I | GCNNGC | 1 cut(s) | 549 |
| BstDEI | CTNAG | 2 cut(s) | 411, 474 |
| BstDSI | CCRYGG | 2 cut(s) | 402, 559 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstH2I | RGCGCY | 1 cut(s) | 345 |
| BstHHI | GCGC | 2 cut(s) | 344, 443 |
| BstKTI | GATC | 2 cut(s) | 237, 665 |
| BstMAI | GTCTC | 2 cut(s) | 195, 268 |
| BstMBI | GATC | 2 cut(s) | 234, 662 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 653 |
| BstNSI | RCATGY | 1 cut(s) | 647 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstSLI | GKGCMC | 1 cut(s) | 553 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BsuRI | GGCC | 1 cut(s) | 210 |
| BtgI | CCRYGG | 2 cut(s) | 402, 559 |
| BtgZI | GCGATG | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 549 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 2 cut(s) | 344, 443 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| CseI | GACGC | 3 cut(s) | 465, 504, 623 |
| Csp6I | GTAC | 1 cut(s) | 364 |
| CviAII | CATG | 3 cut(s) | 329, 346, 644 |
| CviJI | RGCY | 8 cut(s) | 52, 129, 210, 215, 334, 356, 596, 673 |
| CviKI_1 | RGCY | 8 cut(s) | 52, 129, 210, 215, 334, 356, 596, 673 |
| CviQI | GTAC | 1 cut(s) | 364 |
| DdeI | CTNAG | 2 cut(s) | 411, 474 |
| DinI | GGCGCC | 1 cut(s) | 343 |
| DpnI | GATC | 2 cut(s) | 236, 664 |
| DpnII | GATC | 2 cut(s) | 234, 662 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| EaeI | YGGCCR | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 2 cut(s) | 183, 572 |
| EarI | CTCTTC | 2 cut(s) | 183, 572 |
| EciI | GGCGGA | 1 cut(s) | 606 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| EgeI | GGCGCC | 1 cut(s) | 343 |
| EheI | GGCGCC | 1 cut(s) | 343 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 3 cut(s) | 332, 349, 647 |
| FaqI | GGGAC | 1 cut(s) | 497 |
| FatI | CATG | 3 cut(s) | 328, 345, 643 |
| Fnu4HI | GCNGC | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 1 cut(s) | 71 |
| FspBI | CTAG | 1 cut(s) | 396 |
| GlaI | GCGC | 2 cut(s) | 343, 442 |
| GluI | GCNGC | 1 cut(s) | 71 |
| HaeII | RGCGCY | 1 cut(s) | 345 |
| HaeIII | GGCC | 1 cut(s) | 210 |
| HapII | CCGG | 2 cut(s) | 422, 600 |
| HgaI | GACGC | 3 cut(s) | 465, 504, 623 |
| HhaI | GCGC | 2 cut(s) | 344, 443 |
| Hin1I | GRCGYC | 2 cut(s) | 342, 615 |
| Hin1II | CATG | 3 cut(s) | 332, 349, 647 |
| Hin6I | GCGC | 2 cut(s) | 342, 441 |
| HinP1I | GCGC | 2 cut(s) | 342, 441 |
| HincII | GTYRAC | 1 cut(s) | 569 |
| HindII | GTYRAC | 1 cut(s) | 569 |
| HinfI | GANTC | 3 cut(s) | 92, 244, 425 |
| HpaII | CCGG | 2 cut(s) | 422, 600 |
| HphI | GGTGA | 1 cut(s) | 623 |
| Hpy166II | GTNNAC | 2 cut(s) | 551, 569 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 195, 294 |
| Hpy188III | TCNNGA | 9 cut(s) | 89, 104, 238, 319, 329, 379, 422, 492, 660 |
| Hpy8I | GTNNAC | 2 cut(s) | 551, 569 |
| HpyAV | CCTTC | 2 cut(s) | 265, 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 560 |
| HpyCH4IV | ACGT | 4 cut(s) | 84, 313, 351, 571 |
| HpyCH4V | TGCA | 2 cut(s) | 551, 647 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 653 |
| HpyF3I | CTNAG | 2 cut(s) | 411, 474 |
| HpySE526I | ACGT | 4 cut(s) | 84, 313, 351, 571 |
| Hsp92I | GRCGYC | 2 cut(s) | 342, 615 |
| Hsp92II | CATG | 3 cut(s) | 332, 349, 647 |
| HspAI | GCGC | 2 cut(s) | 342, 441 |
| KasI | GGCGCC | 1 cut(s) | 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Kzo9I | GATC | 2 cut(s) | 234, 662 |
| LmnI | GCTCC | 4 cut(s) | 18, 463, 593, 670 |
| LpnPI | CCDG | 8 cut(s) | 110, 117, 284, 294, 435, 477, 486, 613 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| LweI | GCATC | 1 cut(s) | 665 |
| MaeI | CTAG | 1 cut(s) | 396 |
| MaeII | ACGT | 4 cut(s) | 84, 313, 351, 571 |
| MaeIII | GTNAC | 2 cut(s) | 89, 611 |
| MalI | GATC | 2 cut(s) | 236, 664 |
| MboI | GATC | 2 cut(s) | 234, 662 |
| MboII | GAAGA | 5 cut(s) | 50, 170, 253, 394, 589 |
| MhlI | GDGCHC | 1 cut(s) | 553 |
| MlsI | TGGCCA | 1 cut(s) | 210 |
| MluCI | AATT | 2 cut(s) | 286, 487 |
| MluNI | TGGCCA | 1 cut(s) | 210 |
| Mly113I | GGCGCC | 1 cut(s) | 342 |
| MlyI | GAGTC | 3 cut(s) | 86, 238, 434 |
| MmeI | TCCRAC | 1 cut(s) | 662 |
| Mox20I | TGGCCA | 1 cut(s) | 210 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MscI | TGGCCA | 1 cut(s) | 210 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| Msp20I | TGGCCA | 1 cut(s) | 210 |
| MspI | CCGG | 2 cut(s) | 422, 600 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 653 |
| NarI | GGCGCC | 1 cut(s) | 342 |
| NdeII | GATC | 2 cut(s) | 234, 662 |
| NlaIII | CATG | 3 cut(s) | 332, 349, 647 |
| NlaIV | GGNNCC | 5 cut(s) | 174, 343, 557, 595, 672 |
| NmuCI | GTSAC | 2 cut(s) | 89, 611 |
| NspI | RCATGY | 1 cut(s) | 647 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 463 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PkrI | GCNGC | 1 cut(s) | 72 |
| PleI | GAGTC | 3 cut(s) | 86, 238, 433 |
| PluTI | GGCGCC | 1 cut(s) | 345 |
| PpsI | GAGTC | 3 cut(s) | 86, 238, 433 |
| PsiI | TTATAA | 1 cut(s) | 165 |
| Psp1406I | AACGTT | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 5 cut(s) | 174, 343, 557, 595, 672 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| RsaI | GTAC | 1 cut(s) | 365 |
| RsaNI | GTAC | 1 cut(s) | 364 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SatI | GCNGC | 1 cut(s) | 71 |
| Sau3AI | GATC | 2 cut(s) | 234, 662 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 3 cut(s) | 86, 238, 434 |
| SduI | GDGCHC | 1 cut(s) | 553 |
| SfaNI | GCATC | 1 cut(s) | 665 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SfoI | GGCGCC | 1 cut(s) | 343 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 2 cut(s) | 286, 487 |
| SsiI | CCGC | 2 cut(s) | 133, 591 |
| SspDI | GGCGCC | 1 cut(s) | 341 |
| SspMI | CTAG | 1 cut(s) | 396 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 560 |
| TaiI | ACGT | 4 cut(s) | 87, 316, 354, 574 |
| TaqI | TCGA | 2 cut(s) | 237, 661 |
| TasI | AATT | 2 cut(s) | 286, 487 |
| TseFI | GTSAC | 2 cut(s) | 89, 611 |
| TseI | GCWGC | 1 cut(s) | 70 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 611 |
| TspDTI | ATGAA | 4 cut(s) | 17, 36, 317, 362 |
| TspGWI | ACGGA | 1 cut(s) | 568 |
| VneI | GTGCAC | 1 cut(s) | 549 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XceI | RCATGY | 1 cut(s) | 647 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 51 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 396 |