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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 554 |
| AciI | CCGC | 2 cut(s) | 226, 487 |
| AclI | AACGTT | 1 cut(s) | 597 |
| AclWI | GGATC | 1 cut(s) | 416 |
| AcsI | RAATTY | 1 cut(s) | 293 |
| AcyI | GRCGYC | 1 cut(s) | 537 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 499, 503 |
| AgsI | TTSAA | 2 cut(s) | 241, 591 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 153, 185 |
| AluBI | AGCT | 4 cut(s) | 20, 26, 427, 437 |
| AluI | AGCT | 4 cut(s) | 20, 26, 427, 437 |
| Alw21I | GWGCWC | 1 cut(s) | 429 |
| Alw26I | GTCTC | 2 cut(s) | 157, 361 |
| AlwI | GGATC | 1 cut(s) | 416 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| ApoI | RAATTY | 1 cut(s) | 293 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 270 |
| AspA2I | CCTAGG | 2 cut(s) | 497, 559 |
| AsuHPI | GGTGA | 2 cut(s) | 560, 575 |
| AvrII | CCTAGG | 2 cut(s) | 497, 559 |
| BaeGI | GKGCMC | 1 cut(s) | 559 |
| BanI | GGYRCC | 1 cut(s) | 554 |
| BanII | GRGCYC | 1 cut(s) | 429 |
| BbsI | GAAGAC | 1 cut(s) | 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 429 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BccI | CCATC | 6 cut(s) | 80, 207, 361, 527, 545, 549 |
| BcoDI | GTCTC | 2 cut(s) | 157, 361 |
| BfaI | CTAG | 3 cut(s) | 203, 498, 560 |
| BfmI | CTRYAG | 1 cut(s) | 399 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BglII | AGATCT | 1 cut(s) | 378 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlnI | CCTAGG | 2 cut(s) | 497, 559 |
| BlpI | GCTNAGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| BmiI | GGNNCC | 1 cut(s) | 556 |
| BmsI | GCATC | 1 cut(s) | 556 |
| BpiI | GAAGAC | 1 cut(s) | 341 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 12 |
| BpuEI | CTTGAG | 2 cut(s) | 6, 594 |
| BsaHI | GRCGYC | 1 cut(s) | 537 |
| BsaI | GGTCTC | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 4 cut(s) | 469, 497, 528, 559 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 499, 503 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| Bse3DI | GCAATG | 1 cut(s) | 181 |
| BseDI | CCNNGG | 4 cut(s) | 469, 497, 528, 559 |
| BseGI | GGATG | 4 cut(s) | 75, 103, 465, 538 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 499, 503 |
| BseMI | GCAATG | 1 cut(s) | 181 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BseSI | GKGCMC | 1 cut(s) | 559 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| BshNI | GGYRCC | 1 cut(s) | 554 |
| BsiHKAI | GWGCWC | 1 cut(s) | 429 |
| BslFI | GGGAC | 1 cut(s) | 497 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 499, 503 |
| BsmAI | GTCTC | 2 cut(s) | 157, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| BsmFI | GGGAC | 1 cut(s) | 497 |
| Bso31I | GGTCTC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 2 cut(s) | 429, 559 |
| Bsp143I | GATC | 3 cut(s) | 309, 378, 408 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 12 |
| Bsp19I | CCATGG | 1 cut(s) | 528 |
| BspACI | CCGC | 2 cut(s) | 226, 487 |
| BspCNI | CTCAG | 1 cut(s) | 4 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 1 cut(s) | 556 |
| BspMAI | CTGCAG | 1 cut(s) | 403 |
| BspPI | GGATC | 1 cut(s) | 416 |
| BspT107I | GGYRCC | 1 cut(s) | 554 |
| BspTNI | GGTCTC | 1 cut(s) | 157 |
| BsrDI | GCAATG | 1 cut(s) | 181 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 4 cut(s) | 469, 497, 528, 559 |
| BssMI | GATC | 3 cut(s) | 309, 378, 408 |
| BssNI | GRCGYC | 1 cut(s) | 537 |
| BssT1I | CCWWGG | 4 cut(s) | 469, 497, 528, 559 |
| Bst4CI | ACNGT | 1 cut(s) | 511 |
| BstACI | GRCGYC | 1 cut(s) | 537 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 505 |
| BstDEI | CTNAG | 3 cut(s) | 12, 49, 375 |
| BstDSI | CCRYGG | 1 cut(s) | 528 |
| BstF5I | GGATG | 4 cut(s) | 75, 103, 465, 538 |
| BstKTI | GATC | 3 cut(s) | 312, 381, 411 |
| BstMAI | GTCTC | 2 cut(s) | 157, 361 |
| BstMBI | GATC | 3 cut(s) | 309, 378, 408 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 17, 53, 62 |
| BstSFI | CTRYAG | 1 cut(s) | 399 |
| BstSLI | GKGCMC | 1 cut(s) | 559 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 1 cut(s) | 341 |
| BstX2I | RGATCY | 1 cut(s) | 378 |
| BstYI | RGATCY | 1 cut(s) | 378 |
| BtgI | CCRYGG | 1 cut(s) | 528 |
| BtgZI | GCGATG | 1 cut(s) | 335 |
| BtsCI | GGATG | 4 cut(s) | 75, 103, 465, 538 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 505 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CseI | GACGC | 1 cut(s) | 526 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 4 cut(s) | 422, 458, 529, 545 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 3 cut(s) | 12, 49, 375 |
| DpnI | GATC | 3 cut(s) | 311, 380, 410 |
| DpnII | GATC | 3 cut(s) | 309, 378, 408 |
| EciI | GGCGGA | 1 cut(s) | 476 |
| Ecl136II | GAGCTC | 1 cut(s) | 427 |
| Eco130I | CCWWGG | 4 cut(s) | 469, 497, 528, 559 |
| Eco24I | GRGCYC | 1 cut(s) | 429 |
| Eco31I | GGTCTC | 1 cut(s) | 157 |
| Eco53kI | GAGCTC | 1 cut(s) | 427 |
| EcoICRI | GAGCTC | 1 cut(s) | 427 |
| EcoT14I | CCWWGG | 4 cut(s) | 469, 497, 528, 559 |
| EcoT38I | GRGCYC | 1 cut(s) | 429 |
| ErhI | CCWWGG | 4 cut(s) | 469, 497, 528, 559 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaeI | CATG | 4 cut(s) | 425, 461, 532, 548 |
| FaqI | GGGAC | 1 cut(s) | 497 |
| FatI | CATG | 4 cut(s) | 421, 457, 528, 544 |
| FauNDI | CATATG | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| FokI | GGATG | 4 cut(s) | 62, 110, 452, 545 |
| FriOI | GRGCYC | 1 cut(s) | 429 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| FspBI | CTAG | 3 cut(s) | 203, 498, 560 |
| GluI | GCNGC | 1 cut(s) | 45 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HgaI | GACGC | 1 cut(s) | 526 |
| Hin1I | GRCGYC | 1 cut(s) | 537 |
| Hin1II | CATG | 4 cut(s) | 425, 461, 532, 548 |
| HindIII | AAGCTT | 1 cut(s) | 24 |
| HinfI | GANTC | 4 cut(s) | 85, 101, 185, 337 |
| HphI | GGTGA | 2 cut(s) | 560, 575 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 604 |
| Hpy188III | TCNNGA | 3 cut(s) | 197, 251, 422 |
| HpyAV | CCTTC | 2 cut(s) | 135, 358 |
| HpyCH4III | ACNGT | 1 cut(s) | 511 |
| HpyCH4IV | ACGT | 1 cut(s) | 597 |
| HpyCH4V | TGCA | 2 cut(s) | 362, 401 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 17, 53, 62 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 49, 375 |
| HpySE526I | ACGT | 1 cut(s) | 597 |
| Hsp92I | GRCGYC | 1 cut(s) | 537 |
| Hsp92II | CATG | 4 cut(s) | 425, 461, 532, 548 |
| Kzo9I | GATC | 3 cut(s) | 309, 378, 408 |
| LmnI | GCTCC | 2 cut(s) | 111, 434 |
| LpnPI | CCDG | 6 cut(s) | 122, 151, 203, 387, 489, 506 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| LweI | GCATC | 1 cut(s) | 556 |
| MaeI | CTAG | 3 cut(s) | 203, 498, 560 |
| MaeII | ACGT | 1 cut(s) | 597 |
| MaeIII | GTNAC | 4 cut(s) | 182, 394, 445, 593 |
| MalI | GATC | 3 cut(s) | 311, 380, 410 |
| MboI | GATC | 3 cut(s) | 309, 378, 408 |
| MboII | GAAGA | 2 cut(s) | 44, 346 |
| MflI | RGATCY | 1 cut(s) | 378 |
| MhlI | GDGCHC | 2 cut(s) | 429, 559 |
| MluCI | AATT | 2 cut(s) | 293, 387 |
| MlyI | GAGTC | 3 cut(s) | 79, 179, 331 |
| MnlI | CCTC | 3 cut(s) | 46, 233, 490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 270 |
| MseI | TTAA | 1 cut(s) | 287 |
| MslI | CAYNNNNRTG | 4 cut(s) | 80, 96, 546, 549 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 17, 53, 62 |
| NcoI | CCATGG | 1 cut(s) | 528 |
| NdeI | CATATG | 1 cut(s) | 93 |
| NdeII | GATC | 3 cut(s) | 309, 378, 408 |
| NlaIII | CATG | 4 cut(s) | 425, 461, 532, 548 |
| NlaIV | GGNNCC | 1 cut(s) | 556 |
| NmuCI | GTSAC | 2 cut(s) | 182, 445 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PdmI | GAANNNNTTC | 1 cut(s) | 270 |
| PfeI | GAWTC | 1 cut(s) | 101 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 3 cut(s) | 79, 179, 331 |
| PpsI | GAGTC | 3 cut(s) | 79, 179, 331 |
| Psp124BI | GAGCTC | 1 cut(s) | 429 |
| Psp1406I | AACGTT | 1 cut(s) | 597 |
| PspN4I | GGNNCC | 1 cut(s) | 556 |
| PstI | CTGCAG | 1 cut(s) | 403 |
| PsuI | RGATCY | 1 cut(s) | 378 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 4 cut(s) | 80, 96, 546, 549 |
| SacI | GAGCTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 1 cut(s) | 287 |
| SatI | GCNGC | 1 cut(s) | 45 |
| Sau3AI | GATC | 3 cut(s) | 309, 378, 408 |
| SchI | GAGTC | 3 cut(s) | 79, 179, 331 |
| SduI | GDGCHC | 2 cut(s) | 429, 559 |
| SetI | ASST | 9 cut(s) | 22, 28, 204, 350, 419, 429, 439, 565, 600 |
| SfaNI | GCATC | 1 cut(s) | 556 |
| SfcI | CTRYAG | 1 cut(s) | 399 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 80, 96, 546, 549 |
| SmlI | CTYRAG | 2 cut(s) | 21, 609 |
| SmoI | CTYRAG | 2 cut(s) | 21, 609 |
| Sse9I | AATT | 2 cut(s) | 293, 387 |
| SsiI | CCGC | 2 cut(s) | 226, 487 |
| SspMI | CTAG | 3 cut(s) | 203, 498, 560 |
| SstI | GAGCTC | 1 cut(s) | 429 |
| StyI | CCWWGG | 4 cut(s) | 469, 497, 528, 559 |
| TaaI | ACNGT | 1 cut(s) | 511 |
| TaiI | ACGT | 1 cut(s) | 600 |
| TaqI | TCGA | 2 cut(s) | 159, 385 |
| TasI | AATT | 2 cut(s) | 293, 387 |
| TfiI | GAWTC | 1 cut(s) | 101 |
| Tru1I | TTAA | 1 cut(s) | 287 |
| Tru9I | TTAA | 1 cut(s) | 287 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseFI | GTSAC | 2 cut(s) | 182, 445 |
| TseI | GCWGC | 1 cut(s) | 44 |
| Tsp45I | GTSAC | 2 cut(s) | 182, 445 |
| TspDTI | ATGAA | 5 cut(s) | 137, 141, 305, 410, 455 |
| TspGWI | ACGGA | 2 cut(s) | 421, 472 |
| TspRI | CASTG | 1 cut(s) | 454 |
| XapI | RAATTY | 1 cut(s) | 293 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 500, 548 |
| XmaJI | CCTAGG | 2 cut(s) | 497, 559 |
| XmnI | GAANNNNTTC | 1 cut(s) | 270 |
| XspI | CTAG | 3 cut(s) | 203, 498, 560 |