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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 495, 540 |
| Acc36I | ACCTGC | 1 cut(s) | 630 |
| AccB1I | GGYRCC | 2 cut(s) | 737, 758 |
| AccII | CGCG | 1 cut(s) | 427 |
| AciI | CCGC | 3 cut(s) | 427, 616, 637 |
| AclWI | GGATC | 3 cut(s) | 139, 599, 612 |
| AcvI | CACGTG | 2 cut(s) | 659, 677 |
| AcyI | GRCGYC | 2 cut(s) | 738, 759 |
| AdeI | CACNNNGTG | 1 cut(s) | 662 |
| AfeI | AGCGCT | 2 cut(s) | 270, 281 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 554, 555, 625, 678 |
| AflIII | ACRYGT | 2 cut(s) | 656, 674 |
| AgsI | TTSAA | 7 cut(s) | 44, 149, 296, 319, 326, 355, 501 |
| AjnI | CCWGG | 1 cut(s) | 188 |
| AluBI | AGCT | 6 cut(s) | 37, 47, 209, 230, 383, 461 |
| AluI | AGCT | 6 cut(s) | 37, 47, 209, 230, 383, 461 |
| Alw21I | GWGCWC | 1 cut(s) | 201 |
| AlwI | GGATC | 3 cut(s) | 139, 599, 612 |
| Aor51HI | AGCGCT | 2 cut(s) | 270, 281 |
| AoxI | GGCC | 2 cut(s) | 503, 717 |
| ApeKI | GCWGC | 1 cut(s) | 80 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AspLEI | GCGC | 5 cut(s) | 271, 282, 561, 740, 761 |
| AspS9I | GGNCC | 3 cut(s) | 185, 504, 717 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| BamHI | GGATCC | 1 cut(s) | 604 |
| BanI | GGYRCC | 2 cut(s) | 737, 758 |
| BauI | CACGAG | 2 cut(s) | 482, 726 |
| BbrPI | CACGTG | 2 cut(s) | 659, 677 |
| Bbv12I | GWGCWC | 1 cut(s) | 201 |
| BbvI | GCAGC | 1 cut(s) | 92 |
| BccI | CCATC | 1 cut(s) | 186 |
| BciT130I | CCWGG | 1 cut(s) | 190 |
| BciVI | GTATCC | 1 cut(s) | 707 |
| BclI | TGATCA | 1 cut(s) | 420 |
| BfaI | CTAG | 2 cut(s) | 5, 272 |
| BfmI | CTRYAG | 3 cut(s) | 48, 392, 456 |
| BfoI | RGCGCY | 4 cut(s) | 272, 283, 741, 762 |
| BfuAI | ACCTGC | 1 cut(s) | 630 |
| BfuI | GTATCC | 1 cut(s) | 707 |
| BisI | GCNGC | 1 cut(s) | 81 |
| BlsI | GCNGC | 1 cut(s) | 82 |
| Bme1390I | CCNGG | 1 cut(s) | 190 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 504, 717 |
| BmiI | GGNNCC | 6 cut(s) | 186, 187, 606, 718, 739, 760 |
| BmrFI | CCNGG | 1 cut(s) | 190 |
| BsaAI | YACGTR | 2 cut(s) | 659, 677 |
| BsaHI | GRCGYC | 2 cut(s) | 738, 759 |
| BsaJI | CCNNGG | 5 cut(s) | 188, 189, 700, 720, 741 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 673, 703 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 554, 555, 625, 678 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseBI | CCWGG | 1 cut(s) | 190 |
| BseDI | CCNNGG | 5 cut(s) | 188, 189, 700, 720, 741 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 554, 555, 625, 678 |
| BseMII | CTCAG | 1 cut(s) | 453 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseRI | GAGGAG | 1 cut(s) | 155 |
| BseXI | GCAGC | 1 cut(s) | 92 |
| BseYI | CCCAGC | 1 cut(s) | 205 |
| Bsh1236I | CGCG | 1 cut(s) | 427 |
| BshFI | GGCC | 2 cut(s) | 505, 719 |
| BshNI | GGYRCC | 2 cut(s) | 737, 758 |
| BsiHKAI | GWGCWC | 1 cut(s) | 201 |
| BslFI | GGGAC | 3 cut(s) | 107, 198, 609 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 554, 555, 625, 678 |
| BsmFI | GGGAC | 3 cut(s) | 107, 198, 609 |
| BsmI | GAATGC | 1 cut(s) | 673 |
| BsnI | GGCC | 2 cut(s) | 505, 719 |
| Bsp1286I | GDGCHC | 1 cut(s) | 201 |
| Bsp143I | GATC | 3 cut(s) | 131, 420, 604 |
| Bsp19I | CCATGG | 2 cut(s) | 720, 741 |
| BspACI | CCGC | 3 cut(s) | 427, 616, 637 |
| BspANI | GGCC | 2 cut(s) | 505, 719 |
| BspCNI | CTCAG | 1 cut(s) | 454 |
| BspFNI | CGCG | 1 cut(s) | 427 |
| BspHI | TCATGA | 1 cut(s) | 526 |
| BspLI | GGNNCC | 6 cut(s) | 186, 187, 606, 718, 739, 760 |
| BspMI | ACCTGC | 1 cut(s) | 630 |
| BspPI | GGATC | 3 cut(s) | 139, 599, 612 |
| BspQI | GCTCTTC | 1 cut(s) | 270 |
| BspT107I | GGYRCC | 2 cut(s) | 737, 758 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 5 cut(s) | 188, 189, 700, 720, 741 |
| BssMI | GATC | 3 cut(s) | 131, 420, 604 |
| BssNI | GRCGYC | 2 cut(s) | 738, 759 |
| BssSI | CACGAG | 2 cut(s) | 482, 726 |
| BssT1I | CCWWGG | 3 cut(s) | 700, 720, 741 |
| Bst2BI | CACGAG | 2 cut(s) | 482, 726 |
| Bst2UI | CCWGG | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 2 cut(s) | 98, 396 |
| Bst6I | CTCTTC | 2 cut(s) | 257, 270 |
| BstACI | GRCGYC | 2 cut(s) | 738, 759 |
| BstBAI | YACGTR | 2 cut(s) | 659, 677 |
| BstDEI | CTNAG | 3 cut(s) | 462, 576, 771 |
| BstDSI | CCRYGG | 2 cut(s) | 720, 741 |
| BstFNI | CGCG | 1 cut(s) | 427 |
| BstH2I | RGCGCY | 4 cut(s) | 272, 283, 741, 762 |
| BstHHI | GCGC | 5 cut(s) | 271, 282, 561, 740, 761 |
| BstKTI | GATC | 3 cut(s) | 134, 423, 607 |
| BstMBI | GATC | 3 cut(s) | 131, 420, 604 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 277, 565 |
| BstNI | CCWGG | 1 cut(s) | 190 |
| BstSCI | CCNGG | 1 cut(s) | 188 |
| BstSFI | CTRYAG | 3 cut(s) | 48, 392, 456 |
| BstUI | CGCG | 1 cut(s) | 427 |
| BstV1I | GCAGC | 1 cut(s) | 92 |
| BstX2I | RGATCY | 1 cut(s) | 604 |
| BstYI | RGATCY | 1 cut(s) | 604 |
| BsuI | GTATCC | 1 cut(s) | 707 |
| BsuRI | GGCC | 2 cut(s) | 505, 719 |
| BtgI | CCRYGG | 2 cut(s) | 720, 741 |
| BtsIMutI | CAGTG | 1 cut(s) | 103 |
| BveI | ACCTGC | 1 cut(s) | 630 |
| CciI | TCATGA | 1 cut(s) | 526 |
| CfoI | GCGC | 5 cut(s) | 271, 282, 561, 740, 761 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 504, 717 |
| CviAII | CATG | 6 cut(s) | 400, 410, 470, 527, 721, 742 |
| DdeI | CTNAG | 3 cut(s) | 462, 576, 771 |
| DinI | GGCGCC | 2 cut(s) | 739, 760 |
| DpnI | GATC | 3 cut(s) | 133, 422, 606 |
| DpnII | GATC | 3 cut(s) | 131, 420, 604 |
| DraIII | CACNNNGTG | 1 cut(s) | 662 |
| Eam1104I | CTCTTC | 2 cut(s) | 257, 270 |
| EarI | CTCTTC | 2 cut(s) | 257, 270 |
| Eco130I | CCWWGG | 3 cut(s) | 700, 720, 741 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| Eco47III | AGCGCT | 2 cut(s) | 270, 281 |
| Eco72I | CACGTG | 2 cut(s) | 659, 677 |
| EcoO109I | RGGNCCY | 1 cut(s) | 185 |
| EcoRII | CCWGG | 1 cut(s) | 188 |
| EcoT14I | CCWWGG | 3 cut(s) | 700, 720, 741 |
| EgeI | GGCGCC | 2 cut(s) | 739, 760 |
| EheI | GGCGCC | 2 cut(s) | 739, 760 |
| ErhI | CCWWGG | 3 cut(s) | 700, 720, 741 |
| FaeI | CATG | 6 cut(s) | 403, 413, 473, 530, 724, 745 |
| FaqI | GGGAC | 3 cut(s) | 107, 198, 609 |
| FatI | CATG | 6 cut(s) | 399, 409, 469, 526, 720, 741 |
| FauNDI | CATATG | 1 cut(s) | 600 |
| FbaI | TGATCA | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 1 cut(s) | 81 |
| Fsp4HI | GCNGC | 1 cut(s) | 81 |
| FspBI | CTAG | 2 cut(s) | 5, 272 |
| GlaI | GCGC | 5 cut(s) | 270, 281, 560, 739, 760 |
| GluI | GCNGC | 1 cut(s) | 81 |
| GsaI | CCCAGC | 1 cut(s) | 209 |
| HaeII | RGCGCY | 4 cut(s) | 272, 283, 741, 762 |
| HaeIII | GGCC | 2 cut(s) | 505, 719 |
| HhaI | GCGC | 5 cut(s) | 271, 282, 561, 740, 761 |
| Hin1I | GRCGYC | 2 cut(s) | 738, 759 |
| Hin1II | CATG | 6 cut(s) | 403, 413, 473, 530, 724, 745 |
| Hin6I | GCGC | 5 cut(s) | 269, 280, 559, 738, 759 |
| HinP1I | GCGC | 5 cut(s) | 269, 280, 559, 738, 759 |
| HinfI | GANTC | 1 cut(s) | 299 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy188I | TCNGA | 2 cut(s) | 234, 379 |
| Hpy188III | TCNNGA | 3 cut(s) | 296, 484, 527 |
| HpyAV | CCTTC | 3 cut(s) | 104, 313, 313 |
| HpyCH4III | ACNGT | 2 cut(s) | 98, 396 |
| HpyCH4IV | ACGT | 2 cut(s) | 658, 676 |
| HpyCH4V | TGCA | 1 cut(s) | 545 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 277, 565 |
| HpyF3I | CTNAG | 3 cut(s) | 462, 576, 771 |
| HpySE526I | ACGT | 2 cut(s) | 658, 676 |
| Hsp92I | GRCGYC | 2 cut(s) | 738, 759 |
| Hsp92II | CATG | 6 cut(s) | 403, 413, 473, 530, 724, 745 |
| HspAI | GCGC | 5 cut(s) | 269, 280, 559, 738, 759 |
| KasI | GGCGCC | 2 cut(s) | 737, 758 |
| KflI | GGGWCCC | 1 cut(s) | 185 |
| Ksp22I | TGATCA | 1 cut(s) | 420 |
| Kzo9I | GATC | 3 cut(s) | 131, 420, 604 |
| LguI | GCTCTTC | 1 cut(s) | 270 |
| LmnI | GCTCC | 2 cut(s) | 235, 565 |
| LpnPI | CCDG | 7 cut(s) | 114, 167, 175, 202, 219, 399, 625 |
| Lsp1109I | GCAGC | 1 cut(s) | 92 |
| MaeI | CTAG | 2 cut(s) | 5, 272 |
| MaeII | ACGT | 2 cut(s) | 658, 676 |
| MaeIII | GTNAC | 2 cut(s) | 151, 569 |
| MalI | GATC | 3 cut(s) | 133, 422, 606 |
| MboI | GATC | 3 cut(s) | 131, 420, 604 |
| MboII | GAAGA | 6 cut(s) | 98, 119, 239, 244, 287, 641 |
| MflI | RGATCY | 1 cut(s) | 604 |
| MhlI | GDGCHC | 1 cut(s) | 201 |
| MluCI | AATT | 4 cut(s) | 373, 490, 496, 535 |
| Mly113I | GGCGCC | 2 cut(s) | 738, 759 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MseI | TTAA | 2 cut(s) | 102, 404 |
| MslI | CAYNNNNRTG | 1 cut(s) | 482 |
| MspR9I | CCNGG | 1 cut(s) | 190 |
| Mva1269I | GAATGC | 1 cut(s) | 673 |
| MvaI | CCWGG | 1 cut(s) | 190 |
| MvnI | CGCG | 1 cut(s) | 427 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 277, 565 |
| NarI | GGCGCC | 2 cut(s) | 738, 759 |
| NcoI | CCATGG | 2 cut(s) | 720, 741 |
| NdeI | CATATG | 1 cut(s) | 600 |
| NdeII | GATC | 3 cut(s) | 131, 420, 604 |
| NlaIII | CATG | 6 cut(s) | 403, 413, 473, 530, 724, 745 |
| NlaIV | GGNNCC | 6 cut(s) | 186, 187, 606, 718, 739, 760 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| PagI | TCATGA | 1 cut(s) | 526 |
| PasI | CCCWGGG | 1 cut(s) | 189 |
| PciSI | GCTCTTC | 1 cut(s) | 270 |
| PctI | GAATGC | 1 cut(s) | 673 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PfeI | GAWTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 1 cut(s) | 82 |
| PluTI | GGCGCC | 2 cut(s) | 741, 762 |
| PmaCI | CACGTG | 2 cut(s) | 659, 677 |
| PmlI | CACGTG | 2 cut(s) | 659, 677 |
| Ppu21I | YACGTR | 2 cut(s) | 659, 677 |
| PpuMI | RGGWCCY | 1 cut(s) | 185 |
| PsiI | TTATAA | 2 cut(s) | 495, 540 |
| Psp5II | RGGWCCY | 1 cut(s) | 185 |
| Psp6I | CCWGG | 1 cut(s) | 188 |
| PspCI | CACGTG | 2 cut(s) | 659, 677 |
| PspFI | CCCAGC | 1 cut(s) | 205 |
| PspGI | CCWGG | 1 cut(s) | 188 |
| PspN4I | GGNNCC | 6 cut(s) | 186, 187, 606, 718, 739, 760 |
| PspPI | GGNCC | 3 cut(s) | 185, 504, 717 |
| PspPPI | RGGWCCY | 1 cut(s) | 185 |
| PsuI | RGATCY | 1 cut(s) | 604 |
| RseI | CAYNNNNRTG | 1 cut(s) | 482 |
| SapI | GCTCTTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 2 cut(s) | 102, 404 |
| SatI | GCNGC | 1 cut(s) | 81 |
| Sau3AI | GATC | 3 cut(s) | 131, 420, 604 |
| Sau96I | GGNCC | 3 cut(s) | 185, 504, 717 |
| ScrFI | CCNGG | 1 cut(s) | 190 |
| SduI | GDGCHC | 1 cut(s) | 201 |
| SfcI | CTRYAG | 3 cut(s) | 48, 392, 456 |
| SfoI | GGCGCC | 2 cut(s) | 739, 760 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 482 |
| Sse9I | AATT | 4 cut(s) | 373, 490, 496, 535 |
| SsiI | CCGC | 3 cut(s) | 427, 616, 637 |
| SspDI | GGCGCC | 2 cut(s) | 737, 758 |
| SspMI | CTAG | 2 cut(s) | 5, 272 |
| StyD4I | CCNGG | 1 cut(s) | 188 |
| StyI | CCWWGG | 3 cut(s) | 700, 720, 741 |
| TaaI | ACNGT | 2 cut(s) | 98, 396 |
| TaiI | ACGT | 2 cut(s) | 661, 679 |
| TasI | AATT | 4 cut(s) | 373, 490, 496, 535 |
| TfiI | GAWTC | 1 cut(s) | 299 |
| Tru1I | TTAA | 2 cut(s) | 102, 404 |
| Tru9I | TTAA | 2 cut(s) | 102, 404 |
| TscAI | CASTG | 1 cut(s) | 103 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| TseI | GCWGC | 1 cut(s) | 80 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 3 cut(s) | 120, 422, 515 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| TspRI | CASTG | 1 cut(s) | 103 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 2 cut(s) | 5, 272 |