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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 175 |
| Acc36I | ACCTGC | 1 cut(s) | 124 |
| AciI | CCGC | 2 cut(s) | 168, 565 |
| AclWI | GGATC | 4 cut(s) | 168, 579, 592, 773 |
| AcoI | YGGCCR | 1 cut(s) | 89 |
| AcuI | CTGAAG | 1 cut(s) | 89 |
| AfaI | GTAC | 1 cut(s) | 683 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 245, 547 |
| AflII | CTTAAG | 1 cut(s) | 571 |
| AflIII | ACRYGT | 2 cut(s) | 678, 803 |
| AgsI | TTSAA | 7 cut(s) | 270, 290, 361, 370, 761, 769, 885 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 28 |
| AluBI | AGCT | 4 cut(s) | 7, 190, 314, 507 |
| AluI | AGCT | 4 cut(s) | 7, 190, 314, 507 |
| Alw21I | GWGCWC | 1 cut(s) | 480 |
| Alw26I | GTCTC | 3 cut(s) | 36, 515, 778 |
| Alw44I | GTGCAC | 1 cut(s) | 476 |
| AlwI | GGATC | 4 cut(s) | 168, 579, 592, 773 |
| Ama87I | CYCGRG | 1 cut(s) | 588 |
| AoxI | GGCC | 6 cut(s) | 13, 89, 382, 481, 575, 772 |
| ApaLI | GTGCAC | 1 cut(s) | 476 |
| AseI | ATTAAT | 1 cut(s) | 126 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 285 |
| AspA2I | CCTAGG | 1 cut(s) | 484 |
| AspLEI | GCGC | 3 cut(s) | 176, 305, 564 |
| AspS9I | GGNCC | 3 cut(s) | 14, 183, 550 |
| AsuHPI | GGTGA | 2 cut(s) | 26, 34 |
| AvaI | CYCGRG | 1 cut(s) | 588 |
| AvaII | GGWCC | 2 cut(s) | 183, 550 |
| AvrII | CCTAGG | 1 cut(s) | 484 |
| BaeGI | GKGCMC | 1 cut(s) | 480 |
| BalI | TGGCCA | 1 cut(s) | 91 |
| BamHI | GGATCC | 1 cut(s) | 584 |
| BbsI | GAAGAC | 3 cut(s) | 278, 608, 768 |
| Bbv12I | GWGCWC | 1 cut(s) | 480 |
| BccI | CCATC | 2 cut(s) | 319, 574 |
| BceAI | ACGGC | 2 cut(s) | 466, 496 |
| BciVI | GTATCC | 1 cut(s) | 530 |
| BcoDI | GTCTC | 3 cut(s) | 36, 515, 778 |
| BfaI | CTAG | 2 cut(s) | 485, 518 |
| BfmI | CTRYAG | 1 cut(s) | 315 |
| BfrI | CTTAAG | 1 cut(s) | 571 |
| BfuAI | ACCTGC | 1 cut(s) | 124 |
| BfuI | GTATCC | 1 cut(s) | 530 |
| BisI | GCNGC | 1 cut(s) | 565 |
| BlnI | CCTAGG | 1 cut(s) | 484 |
| BlsI | GCNGC | 1 cut(s) | 566 |
| Bme18I | GGWCC | 2 cut(s) | 183, 550 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 28 |
| BmeT110I | CYCGRG | 1 cut(s) | 588 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 183, 550 |
| BmiI | GGNNCC | 3 cut(s) | 237, 551, 586 |
| BmsI | GCATC | 5 cut(s) | 253, 576, 598, 638, 850 |
| BpiI | GAAGAC | 3 cut(s) | 278, 608, 768 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 496, 528 |
| BsaAI | YACGTR | 1 cut(s) | 804 |
| BsaBI | GATNNNNATC | 1 cut(s) | 741 |
| BsaI | GGTCTC | 1 cut(s) | 778 |
| BsaJI | CCNNGG | 1 cut(s) | 484 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 245, 547 |
| Bse118I | RCCGGY | 2 cut(s) | 238, 787 |
| Bse8I | GATNNNNATC | 1 cut(s) | 741 |
| BseDI | CCNNGG | 1 cut(s) | 484 |
| BseGI | GGATG | 3 cut(s) | 330, 334, 345 |
| BseJI | GATNNNNATC | 1 cut(s) | 741 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 245, 547 |
| BseSI | GKGCMC | 1 cut(s) | 480 |
| BshFI | GGCC | 6 cut(s) | 15, 91, 384, 483, 577, 774 |
| BsiHKAI | GWGCWC | 1 cut(s) | 480 |
| BsiHKCI | CYCGRG | 1 cut(s) | 588 |
| BsiSI | CCGG | 2 cut(s) | 239, 788 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 245, 547 |
| BsmAI | GTCTC | 3 cut(s) | 36, 515, 778 |
| BsnI | GGCC | 6 cut(s) | 15, 91, 384, 483, 577, 774 |
| Bso31I | GGTCTC | 1 cut(s) | 778 |
| BsoBI | CYCGRG | 1 cut(s) | 588 |
| Bsp1286I | GDGCHC | 1 cut(s) | 480 |
| Bsp1407I | TGTACA | 1 cut(s) | 681 |
| Bsp143I | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| BspACI | CCGC | 2 cut(s) | 168, 565 |
| BspANI | GGCC | 6 cut(s) | 15, 91, 384, 483, 577, 774 |
| BspLI | GGNNCC | 3 cut(s) | 237, 551, 586 |
| BspMI | ACCTGC | 1 cut(s) | 124 |
| BspPI | GGATC | 4 cut(s) | 168, 579, 592, 773 |
| BspTI | CTTAAG | 1 cut(s) | 571 |
| BspTNI | GGTCTC | 1 cut(s) | 778 |
| BsrFI | RCCGGY | 2 cut(s) | 238, 787 |
| BsrGI | TGTACA | 1 cut(s) | 681 |
| BssAI | RCCGGY | 2 cut(s) | 238, 787 |
| BssECI | CCNNGG | 1 cut(s) | 484 |
| BssMI | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| BssT1I | CCWWGG | 1 cut(s) | 484 |
| BstAFI | CTTAAG | 1 cut(s) | 571 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 656 |
| BstAUI | TGTACA | 1 cut(s) | 681 |
| BstBAI | YACGTR | 1 cut(s) | 804 |
| BstC8I | GCNNGC | 1 cut(s) | 178 |
| BstDEI | CTNAG | 1 cut(s) | 752 |
| BstEII | GGTNACC | 1 cut(s) | 488 |
| BstF5I | GGATG | 3 cut(s) | 330, 334, 345 |
| BstHHI | GCGC | 3 cut(s) | 176, 305, 564 |
| BstKTI | GATC | 6 cut(s) | 163, 197, 587, 733, 745, 781 |
| BstMAI | GTCTC | 3 cut(s) | 36, 515, 778 |
| BstMBI | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 311, 656, 707 |
| BstNSI | RCATGY | 1 cut(s) | 654 |
| BstPI | GGTNACC | 1 cut(s) | 488 |
| BstSFI | CTRYAG | 1 cut(s) | 315 |
| BstSLI | GKGCMC | 1 cut(s) | 480 |
| BstV2I | GAAGAC | 3 cut(s) | 278, 608, 768 |
| BstX2I | RGATCY | 3 cut(s) | 160, 584, 778 |
| BstYI | RGATCY | 3 cut(s) | 160, 584, 778 |
| BsuI | GTATCC | 1 cut(s) | 530 |
| BsuRI | GGCC | 6 cut(s) | 15, 91, 384, 483, 577, 774 |
| BtsCI | GGATG | 3 cut(s) | 330, 334, 345 |
| BveI | ACCTGC | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 1 cut(s) | 178 |
| CfoI | GCGC | 3 cut(s) | 176, 305, 564 |
| Cfr10I | RCCGGY | 2 cut(s) | 238, 787 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 183, 550 |
| CseI | GACGC | 1 cut(s) | 283 |
| Csp6I | GTAC | 1 cut(s) | 682 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 278, 313 |
| CviAII | CATG | 4 cut(s) | 198, 245, 651, 718 |
| CviQI | GTAC | 1 cut(s) | 682 |
| DdeI | CTNAG | 1 cut(s) | 752 |
| DpnI | GATC | 6 cut(s) | 162, 196, 586, 732, 744, 780 |
| DpnII | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| DraI | TTTAAA | 1 cut(s) | 259 |
| DriI | GACNNNNNGTC | 1 cut(s) | 28 |
| EaeI | YGGCCR | 1 cut(s) | 89 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 1 cut(s) | 484 |
| Eco31I | GGTCTC | 1 cut(s) | 778 |
| Eco47I | GGWCC | 2 cut(s) | 183, 550 |
| Eco57I | CTGAAG | 1 cut(s) | 89 |
| Eco88I | CYCGRG | 1 cut(s) | 588 |
| Eco91I | GGTNACC | 1 cut(s) | 488 |
| EcoO65I | GGTNACC | 1 cut(s) | 488 |
| EcoT14I | CCWWGG | 1 cut(s) | 484 |
| ErhI | CCWWGG | 1 cut(s) | 484 |
| FaeI | CATG | 4 cut(s) | 201, 248, 654, 721 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 270, 302, 491, 523 |
| FatI | CATG | 4 cut(s) | 197, 244, 650, 717 |
| Fnu4HI | GCNGC | 1 cut(s) | 565 |
| FokI | GGATG | 3 cut(s) | 337, 341, 352 |
| Fsp4HI | GCNGC | 1 cut(s) | 565 |
| FspBI | CTAG | 2 cut(s) | 485, 518 |
| FspI | TGCGCA | 1 cut(s) | 175 |
| GlaI | GCGC | 3 cut(s) | 175, 304, 563 |
| GluI | GCNGC | 1 cut(s) | 565 |
| HaeIII | GGCC | 6 cut(s) | 15, 91, 384, 483, 577, 774 |
| HapII | CCGG | 2 cut(s) | 239, 788 |
| HgaI | GACGC | 1 cut(s) | 283 |
| HhaI | GCGC | 3 cut(s) | 176, 305, 564 |
| Hin1II | CATG | 4 cut(s) | 201, 248, 654, 721 |
| Hin6I | GCGC | 3 cut(s) | 174, 303, 562 |
| HinP1I | GCGC | 3 cut(s) | 174, 303, 562 |
| HincII | GTYRAC | 1 cut(s) | 105 |
| HindII | GTYRAC | 1 cut(s) | 105 |
| HindIII | AAGCTT | 1 cut(s) | 5 |
| HinfI | GANTC | 3 cut(s) | 29, 39, 425 |
| HpaII | CCGG | 2 cut(s) | 239, 788 |
| HphI | GGTGA | 2 cut(s) | 26, 34 |
| Hpy166II | GTNNAC | 3 cut(s) | 105, 478, 682 |
| Hpy188I | TCNGA | 3 cut(s) | 69, 187, 783 |
| Hpy188III | TCNNGA | 4 cut(s) | 353, 588, 633, 734 |
| Hpy8I | GTNNAC | 3 cut(s) | 105, 478, 682 |
| HpyAV | CCTTC | 4 cut(s) | 55, 75, 275, 401 |
| HpyCH4IV | ACGT | 3 cut(s) | 678, 689, 803 |
| HpyCH4V | TGCA | 2 cut(s) | 478, 659 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 311, 656, 707 |
| HpyF3I | CTNAG | 1 cut(s) | 752 |
| HpySE526I | ACGT | 3 cut(s) | 678, 689, 803 |
| Hsp92II | CATG | 4 cut(s) | 201, 248, 654, 721 |
| HspAI | GCGC | 3 cut(s) | 174, 303, 562 |
| Kzo9I | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| LmnI | GCTCC | 5 cut(s) | 235, 300, 517, 626, 721 |
| LpnPI | CCDG | 7 cut(s) | 119, 162, 166, 252, 513, 618, 801 |
| LweI | GCATC | 5 cut(s) | 253, 576, 598, 638, 850 |
| MaeI | CTAG | 2 cut(s) | 485, 518 |
| MaeII | ACGT | 3 cut(s) | 678, 689, 803 |
| MaeIII | GTNAC | 3 cut(s) | 40, 248, 488 |
| MalI | GATC | 6 cut(s) | 162, 196, 586, 732, 744, 780 |
| MboI | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| MboII | GAAGA | 6 cut(s) | 128, 278, 608, 740, 773, 873 |
| MfeI | CAATTG | 1 cut(s) | 835 |
| MflI | RGATCY | 3 cut(s) | 160, 584, 778 |
| MhlI | GDGCHC | 1 cut(s) | 480 |
| MlsI | TGGCCA | 1 cut(s) | 91 |
| MluCI | AATT | 3 cut(s) | 123, 712, 835 |
| MluNI | TGGCCA | 1 cut(s) | 91 |
| MlyI | GAGTC | 2 cut(s) | 38, 48 |
| MmeI | TCCRAC | 1 cut(s) | 213 |
| MnlI | CCTC | 3 cut(s) | 5, 330, 374 |
| Mox20I | TGGCCA | 1 cut(s) | 91 |
| MroXI | GAANNNNTTC | 1 cut(s) | 285 |
| MscI | TGGCCA | 1 cut(s) | 91 |
| MseI | TTAA | 4 cut(s) | 126, 258, 434, 572 |
| MslI | CAYNNNNRTG | 1 cut(s) | 606 |
| Msp20I | TGGCCA | 1 cut(s) | 91 |
| MspCI | CTTAAG | 1 cut(s) | 571 |
| MspI | CCGG | 2 cut(s) | 239, 788 |
| MunI | CAATTG | 1 cut(s) | 835 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 311, 656, 707 |
| NdeII | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| NlaIII | CATG | 4 cut(s) | 201, 248, 654, 721 |
| NlaIV | GGNNCC | 3 cut(s) | 237, 551, 586 |
| NmuCI | GTSAC | 1 cut(s) | 40 |
| NsbI | TGCGCA | 1 cut(s) | 175 |
| NspI | RCATGY | 1 cut(s) | 654 |
| PdmI | GAANNNNTTC | 1 cut(s) | 285 |
| PfeI | GAWTC | 1 cut(s) | 425 |
| PkrI | GCNGC | 1 cut(s) | 566 |
| PleI | GAGTC | 2 cut(s) | 37, 47 |
| PpsI | GAGTC | 2 cut(s) | 37, 47 |
| Ppu21I | YACGTR | 1 cut(s) | 804 |
| PshBI | ATTAAT | 1 cut(s) | 126 |
| PspEI | GGTNACC | 1 cut(s) | 488 |
| PspN4I | GGNNCC | 3 cut(s) | 237, 551, 586 |
| PspPI | GGNCC | 3 cut(s) | 14, 183, 550 |
| PsuI | RGATCY | 3 cut(s) | 160, 584, 778 |
| RsaI | GTAC | 1 cut(s) | 683 |
| RsaNI | GTAC | 1 cut(s) | 682 |
| RseI | CAYNNNNRTG | 1 cut(s) | 606 |
| SaqAI | TTAA | 4 cut(s) | 126, 258, 434, 572 |
| SatI | GCNGC | 1 cut(s) | 565 |
| Sau3AI | GATC | 6 cut(s) | 160, 194, 584, 730, 742, 778 |
| Sau96I | GGNCC | 3 cut(s) | 14, 183, 550 |
| SchI | GAGTC | 2 cut(s) | 38, 48 |
| SduI | GDGCHC | 1 cut(s) | 480 |
| SfaNI | GCATC | 5 cut(s) | 253, 576, 598, 638, 850 |
| SfcI | CTRYAG | 1 cut(s) | 315 |
| SinI | GGWCC | 2 cut(s) | 183, 550 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 606 |
| SmlI | CTYRAG | 1 cut(s) | 571 |
| SmoI | CTYRAG | 1 cut(s) | 571 |
| Sse9I | AATT | 3 cut(s) | 123, 712, 835 |
| SsiI | CCGC | 2 cut(s) | 168, 565 |
| SspI | AATATT | 1 cut(s) | 670 |
| SspMI | CTAG | 2 cut(s) | 485, 518 |
| StyI | CCWWGG | 1 cut(s) | 484 |
| TaiI | ACGT | 3 cut(s) | 681, 692, 806 |
| TaqI | TCGA | 2 cut(s) | 10, 193 |
| TasI | AATT | 3 cut(s) | 123, 712, 835 |
| TatI | WGTACW | 1 cut(s) | 681 |
| TauI | GCSGC | 1 cut(s) | 567 |
| TfiI | GAWTC | 1 cut(s) | 425 |
| Tru1I | TTAA | 4 cut(s) | 126, 258, 434, 572 |
| Tru9I | TTAA | 4 cut(s) | 126, 258, 434, 572 |
| TseFI | GTSAC | 1 cut(s) | 40 |
| Tsp45I | GTSAC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 5 cut(s) | 17, 129, 233, 345, 356 |
| TspGWI | ACGGA | 2 cut(s) | 212, 542 |
| Vha464I | CTTAAG | 1 cut(s) | 571 |
| VneI | GTGCAC | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 2 cut(s) | 183, 550 |
| VspI | ATTAAT | 1 cut(s) | 126 |
| XceI | RCATGY | 1 cut(s) | 654 |
| XmaJI | CCTAGG | 1 cut(s) | 484 |
| XmnI | GAANNNNTTC | 1 cut(s) | 285 |
| XspI | CTAG | 2 cut(s) | 485, 518 |