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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 38, 415 |
| AclI | AACGTT | 1 cut(s) | 366 |
| AfaI | GTAC | 2 cut(s) | 78, 302 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 49 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgeI | ACCGGT | 1 cut(s) | 118 |
| AgsI | TTSAA | 1 cut(s) | 430 |
| AjiI | CACGTC | 1 cut(s) | 190 |
| AjnI | CCWGG | 1 cut(s) | 183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 342, 374 |
| AluBI | AGCT | 4 cut(s) | 49, 55, 209, 215 |
| AluI | AGCT | 4 cut(s) | 49, 55, 209, 215 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| Alw26I | GTCTC | 1 cut(s) | 346 |
| Ama87I | CYCGRG | 1 cut(s) | 173 |
| AoxI | GGCC | 1 cut(s) | 4 |
| ApeKI | GCWGC | 1 cut(s) | 233 |
| AsiGI | ACCGGT | 1 cut(s) | 118 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 89, 459 |
| AspS9I | GGNCC | 2 cut(s) | 4, 40 |
| AvaI | CYCGRG | 1 cut(s) | 173 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BanII | GRGCYC | 1 cut(s) | 57 |
| BauI | CACGAG | 1 cut(s) | 56 |
| BbsI | GAAGAC | 3 cut(s) | 23, 327, 530 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BbvI | GCAGC | 1 cut(s) | 245 |
| BccI | CCATC | 3 cut(s) | 146, 269, 396 |
| BciT130I | CCWGG | 1 cut(s) | 185 |
| BcoDI | GTCTC | 1 cut(s) | 346 |
| BfaI | CTAG | 4 cut(s) | 44, 180, 392, 564 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 242 |
| BisI | GCNGC | 1 cut(s) | 234 |
| BlsI | GCNGC | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 1 cut(s) | 185 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 1 cut(s) | 173 |
| BmgBI | CACGTC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 40 |
| BmrFI | CCNGG | 1 cut(s) | 185 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BpiI | GAAGAC | 3 cut(s) | 23, 327, 530 |
| BpmI | CTGGAG | 2 cut(s) | 71, 281 |
| BpuEI | CTTGAG | 3 cut(s) | 29, 128, 195 |
| BsaI | GGTCTC | 1 cut(s) | 346 |
| BsaWI | WCCGGW | 1 cut(s) | 118 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 49 |
| Bse118I | RCCGGY | 1 cut(s) | 118 |
| Bse1I | ACTGG | 1 cut(s) | 298 |
| BseBI | CCWGG | 1 cut(s) | 185 |
| BseGI | GGATG | 1 cut(s) | 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseNI | ACTGG | 1 cut(s) | 298 |
| BseXI | GCAGC | 1 cut(s) | 245 |
| Bsh1285I | CGRYCG | 1 cut(s) | 83 |
| BshFI | GGCC | 1 cut(s) | 6 |
| BshTI | ACCGGT | 1 cut(s) | 118 |
| BsiEI | CGRYCG | 1 cut(s) | 83 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsiHKCI | CYCGRG | 1 cut(s) | 173 |
| BsiSI | CCGG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BsmAI | GTCTC | 1 cut(s) | 346 |
| BsnI | GGCC | 1 cut(s) | 6 |
| Bso31I | GGTCTC | 1 cut(s) | 346 |
| BsoBI | CYCGRG | 1 cut(s) | 173 |
| Bsp1286I | GDGCHC | 1 cut(s) | 57 |
| BspACI | CCGC | 2 cut(s) | 38, 415 |
| BspANI | GGCC | 1 cut(s) | 6 |
| BspCNI | CTCAG | 1 cut(s) | 464 |
| BspTNI | GGTCTC | 1 cut(s) | 346 |
| BsrFI | RCCGGY | 1 cut(s) | 118 |
| BsrI | ACTGG | 1 cut(s) | 298 |
| BssAI | RCCGGY | 1 cut(s) | 118 |
| BssSI | CACGAG | 1 cut(s) | 56 |
| Bst2BI | CACGAG | 1 cut(s) | 56 |
| Bst2UI | CCWGG | 1 cut(s) | 185 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 199 |
| BstC8I | GCNNGC | 1 cut(s) | 207 |
| BstDEI | CTNAG | 2 cut(s) | 238, 451 |
| BstF5I | GGATG | 1 cut(s) | 292 |
| BstMAI | GTCTC | 1 cut(s) | 346 |
| BstMCI | CGRYCG | 1 cut(s) | 83 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 242, 251 |
| BstNI | CCWGG | 1 cut(s) | 185 |
| BstSCI | CCNGG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 1 cut(s) | 245 |
| BstV2I | GAAGAC | 3 cut(s) | 23, 327, 530 |
| BsuRI | GGCC | 1 cut(s) | 6 |
| BtgZI | GCGATG | 1 cut(s) | 524 |
| BtrI | CACGTC | 1 cut(s) | 190 |
| BtsCI | GGATG | 1 cut(s) | 292 |
| Cac8I | GCNNGC | 1 cut(s) | 207 |
| Cfr10I | RCCGGY | 1 cut(s) | 118 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 40 |
| Csp6I | GTAC | 2 cut(s) | 77, 301 |
| CspAI | ACCGGT | 1 cut(s) | 118 |
| CviAII | CATG | 1 cut(s) | 161 |
| CviQI | GTAC | 2 cut(s) | 77, 301 |
| DdeI | CTNAG | 2 cut(s) | 238, 451 |
| EciI | GGCGGA | 1 cut(s) | 53 |
| Ecl136II | GAGCTC | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 1 cut(s) | 57 |
| Eco31I | GGTCTC | 1 cut(s) | 346 |
| Eco32I | GATATC | 1 cut(s) | 499 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco53kI | GAGCTC | 1 cut(s) | 55 |
| Eco88I | CYCGRG | 1 cut(s) | 173 |
| EcoICRI | GAGCTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 183 |
| EcoRV | GATATC | 1 cut(s) | 499 |
| EcoT38I | GRGCYC | 1 cut(s) | 57 |
| FaeI | CATG | 1 cut(s) | 164 |
| FaiI | YATR | 9 cut(s) | 162, 167, 269, 282, 284, 311, 408, 421, 487 |
| FatI | CATG | 1 cut(s) | 160 |
| FauNDI | CATATG | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 1 cut(s) | 234 |
| FokI | GGATG | 1 cut(s) | 299 |
| FriOI | GRGCYC | 1 cut(s) | 57 |
| Fsp4HI | GCNGC | 1 cut(s) | 234 |
| FspBI | CTAG | 4 cut(s) | 44, 180, 392, 564 |
| GluI | GCNGC | 1 cut(s) | 234 |
| GsuI | CTGGAG | 2 cut(s) | 71, 281 |
| HaeIII | GGCC | 1 cut(s) | 6 |
| HapII | CCGG | 1 cut(s) | 119 |
| Hin1II | CATG | 1 cut(s) | 164 |
| HindIII | AAGCTT | 1 cut(s) | 213 |
| HinfI | GANTC | 4 cut(s) | 11, 156, 169, 526 |
| HpaII | CCGG | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 1 cut(s) | 61 |
| Hpy188I | TCNGA | 1 cut(s) | 454 |
| Hpy188III | TCNNGA | 3 cut(s) | 58, 173, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 61 |
| HpyAV | CCTTC | 3 cut(s) | 100, 324, 547 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 199 |
| HpyCH4IV | ACGT | 3 cut(s) | 63, 189, 366 |
| HpyCH4V | TGCA | 1 cut(s) | 551 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 242, 251 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 451 |
| HpySE526I | ACGT | 3 cut(s) | 63, 189, 366 |
| Hsp92II | CATG | 1 cut(s) | 164 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| LpnPI | CCDG | 9 cut(s) | 20, 35, 132, 170, 197, 311, 340, 392, 399 |
| Lsp1109I | GCAGC | 1 cut(s) | 245 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeI | CTAG | 4 cut(s) | 44, 180, 392, 564 |
| MaeII | ACGT | 3 cut(s) | 63, 189, 366 |
| MaeIII | GTNAC | 1 cut(s) | 114 |
| MboII | GAAGA | 5 cut(s) | 23, 329, 332, 362, 535 |
| MhlI | GDGCHC | 1 cut(s) | 57 |
| MluCI | AATT | 1 cut(s) | 482 |
| MlyI | GAGTC | 2 cut(s) | 20, 520 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| MnlI | CCTC | 4 cut(s) | 98, 235, 385, 422 |
| MroXI | GAANNNNTTC | 2 cut(s) | 89, 459 |
| MseI | TTAA | 3 cut(s) | 441, 468, 476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 285 |
| MspI | CCGG | 1 cut(s) | 119 |
| MspR9I | CCNGG | 1 cut(s) | 185 |
| MvaI | CCWGG | 1 cut(s) | 185 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 242, 251 |
| NdeI | CATATG | 1 cut(s) | 282 |
| NlaIII | CATG | 1 cut(s) | 164 |
| NmeAIII | GCCGAG | 1 cut(s) | 121 |
| PaeR7I | CTCGAG | 1 cut(s) | 173 |
| PdmI | GAANNNNTTC | 2 cut(s) | 89, 459 |
| PfeI | GAWTC | 2 cut(s) | 156, 169 |
| PinAI | ACCGGT | 1 cut(s) | 118 |
| PkrI | GCNGC | 1 cut(s) | 235 |
| PleI | GAGTC | 2 cut(s) | 19, 520 |
| PpsI | GAGTC | 2 cut(s) | 19, 520 |
| Psp124BI | GAGCTC | 1 cut(s) | 57 |
| Psp1406I | AACGTT | 1 cut(s) | 366 |
| Psp6I | CCWGG | 1 cut(s) | 183 |
| PspGI | CCWGG | 1 cut(s) | 183 |
| PspPI | GGNCC | 2 cut(s) | 4, 40 |
| RsaI | GTAC | 2 cut(s) | 78, 302 |
| RsaNI | GTAC | 2 cut(s) | 77, 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 285 |
| SacI | GAGCTC | 1 cut(s) | 57 |
| SaqAI | TTAA | 3 cut(s) | 441, 468, 476 |
| SatI | GCNGC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 2 cut(s) | 4, 40 |
| SchI | GAGTC | 2 cut(s) | 20, 520 |
| ScrFI | CCNGG | 1 cut(s) | 185 |
| SduI | GDGCHC | 1 cut(s) | 57 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| Sfr274I | CTCGAG | 1 cut(s) | 173 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SlaI | CTCGAG | 1 cut(s) | 173 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 285 |
| SmlI | CTYRAG | 4 cut(s) | 8, 143, 173, 210 |
| SmoI | CTYRAG | 4 cut(s) | 8, 143, 173, 210 |
| Sse9I | AATT | 1 cut(s) | 482 |
| SsiI | CCGC | 2 cut(s) | 38, 415 |
| SspMI | CTAG | 4 cut(s) | 44, 180, 392, 564 |
| SstI | GAGCTC | 1 cut(s) | 57 |
| StyD4I | CCNGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 2 cut(s) | 81, 199 |
| TaiI | ACGT | 3 cut(s) | 66, 192, 369 |
| TaqI | TCGA | 4 cut(s) | 14, 83, 174, 348 |
| TasI | AATT | 1 cut(s) | 482 |
| TfiI | GAWTC | 2 cut(s) | 156, 169 |
| Tru1I | TTAA | 3 cut(s) | 441, 468, 476 |
| Tru9I | TTAA | 3 cut(s) | 441, 468, 476 |
| TseI | GCWGC | 1 cut(s) | 233 |
| TspDTI | ATGAA | 2 cut(s) | 326, 330 |
| TspGWI | ACGGA | 1 cut(s) | 122 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XhoI | CTCGAG | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 2 cut(s) | 89, 459 |
| XspI | CTAG | 4 cut(s) | 44, 180, 392, 564 |