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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 361, 798 |
| AclWI | GGATC | 1 cut(s) | 625 |
| AcsI | RAATTY | 2 cut(s) | 428, 508 |
| AdeI | CACNNNGTG | 1 cut(s) | 838 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 5 cut(s) | 376, 547, 608, 628, 694 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 830 |
| AluI | AGCT | 3 cut(s) | 155, 161, 830 |
| Alw26I | GTCTC | 3 cut(s) | 292, 312, 496 |
| AlwI | GGATC | 1 cut(s) | 625 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 271 |
| ApeKI | GCWGC | 2 cut(s) | 82, 179 |
| ApoI | RAATTY | 2 cut(s) | 428, 508 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AsuC2I | CCSGG | 2 cut(s) | 272, 273 |
| AsuHPI | GGTGA | 2 cut(s) | 682, 787 |
| AvaI | CYCGRG | 2 cut(s) | 119, 271 |
| BaeGI | GKGCMC | 1 cut(s) | 766 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BbvI | GCAGC | 2 cut(s) | 94, 191 |
| BccI | CCATC | 7 cut(s) | 215, 342, 602, 646, 658, 664, 684 |
| BceAI | ACGGC | 1 cut(s) | 560 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcnI | CCSGG | 2 cut(s) | 272, 273 |
| BcoDI | GTCTC | 3 cut(s) | 292, 312, 496 |
| BfaI | CTAG | 5 cut(s) | 126, 338, 524, 774, 866 |
| BfmI | CTRYAG | 1 cut(s) | 96 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 83, 180 |
| BlsI | GCNGC | 2 cut(s) | 84, 181 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 272, 273 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 271 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 574 |
| BmrFI | CCNGG | 3 cut(s) | 131, 272, 273 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 2 cut(s) | 272, 273 |
| BsaBI | GATNNNNATC | 1 cut(s) | 861 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse8I | GATNNNNATC | 1 cut(s) | 861 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 271 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 597 |
| BseJI | GATNNNNATC | 1 cut(s) | 861 |
| BseMII | CTCAG | 1 cut(s) | 744 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 766 |
| BseXI | GCAGC | 2 cut(s) | 94, 191 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 271 |
| BsiSI | CCGG | 2 cut(s) | 79, 272 |
| BsmAI | GTCTC | 3 cut(s) | 292, 312, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 271 |
| Bsp1286I | GDGCHC | 1 cut(s) | 766 |
| Bsp143I | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| BspACI | CCGC | 2 cut(s) | 361, 798 |
| BspCNI | CTCAG | 1 cut(s) | 745 |
| BspLI | GGNNCC | 1 cut(s) | 574 |
| BspPI | GGATC | 1 cut(s) | 625 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 271 |
| BssMI | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 670 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 753 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 597 |
| BstKTI | GATC | 5 cut(s) | 447, 585, 633, 853, 865 |
| BstMAI | GTCTC | 3 cut(s) | 292, 312, 496 |
| BstMBI | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 695, 806, 827 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 3 cut(s) | 129, 270, 271 |
| BstSFI | CTRYAG | 1 cut(s) | 96 |
| BstSLI | GKGCMC | 1 cut(s) | 766 |
| BstV1I | GCAGC | 2 cut(s) | 94, 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 630 |
| BstYI | RGATCY | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 597 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| Cfr9I | CCCGGG | 1 cut(s) | 271 |
| CseI | GACGC | 1 cut(s) | 695 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 753 |
| DpnI | GATC | 5 cut(s) | 446, 584, 632, 852, 864 |
| DpnII | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| DraIII | CACNNNGTG | 1 cut(s) | 838 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 271 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 600, 632 |
| FauNDI | CATATG | 2 cut(s) | 228, 451 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 584 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 180 |
| FspBI | CTAG | 5 cut(s) | 126, 338, 524, 774, 866 |
| GluI | GCNGC | 2 cut(s) | 83, 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HapII | CCGG | 2 cut(s) | 79, 272 |
| HgaI | GACGC | 1 cut(s) | 695 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 320, 472, 624 |
| HpaII | CCGG | 2 cut(s) | 79, 272 |
| HphI | GGTGA | 2 cut(s) | 682, 787 |
| Hpy188I | TCNGA | 3 cut(s) | 317, 400, 754 |
| HpyAV | CCTTC | 4 cut(s) | 270, 493, 563, 602 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 670 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 530 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 695, 806, 827 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 753 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Kzo9I | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 572 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 46, 92, 116, 143, 257, 285, 345 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 5 cut(s) | 126, 338, 524, 774, 866 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 2 cut(s) | 5, 793 |
| MalI | GATC | 5 cut(s) | 446, 584, 632, 852, 864 |
| MboI | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| MboII | GAAGA | 9 cut(s) | 275, 278, 481, 572, 575, 578, 592, 797, 860 |
| MflI | RGATCY | 1 cut(s) | 630 |
| MhlI | GDGCHC | 1 cut(s) | 766 |
| MluCI | AATT | 3 cut(s) | 17, 428, 508 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MmeI | TCCRAC | 1 cut(s) | 658 |
| MnlI | CCTC | 4 cut(s) | 181, 368, 601, 711 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 465 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 681 |
| MspI | CCGG | 2 cut(s) | 79, 272 |
| MspR9I | CCNGG | 3 cut(s) | 131, 272, 273 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 695, 806, 827 |
| NciI | CCSGG | 2 cut(s) | 272, 273 |
| NdeI | CATATG | 2 cut(s) | 228, 451 |
| NdeII | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| NlaIV | GGNNCC | 1 cut(s) | 574 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 624 |
| PkrI | GCNGC | 2 cut(s) | 84, 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 574 |
| PsuI | RGATCY | 1 cut(s) | 630 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 681 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 465 |
| SatI | GCNGC | 2 cut(s) | 83, 180 |
| Sau3AI | GATC | 5 cut(s) | 444, 582, 630, 850, 862 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 3 cut(s) | 131, 272, 273 |
| SduI | GDGCHC | 1 cut(s) | 766 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 96 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmaI | CCCGGG | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 681 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 428, 508 |
| SsiI | CCGC | 2 cut(s) | 361, 798 |
| SspMI | CTAG | 5 cut(s) | 126, 338, 524, 774, 866 |
| StyD4I | CCNGG | 3 cut(s) | 129, 270, 271 |
| TaaI | ACNGT | 2 cut(s) | 145, 670 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 717, 739 |
| TasI | AATT | 3 cut(s) | 17, 428, 508 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 624 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 465 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 465 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| TseI | GCWGC | 2 cut(s) | 82, 179 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 518 |
| TspMI | CCCGGG | 1 cut(s) | 271 |
| XapI | RAATTY | 2 cut(s) | 428, 508 |
| XbaI | TCTAGA | 2 cut(s) | 773, 865 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaI | CCCGGG | 1 cut(s) | 271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 5 cut(s) | 126, 338, 524, 774, 866 |