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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 390, 435 |
| AccB1I | GGYRCC | 2 cut(s) | 599, 641 |
| AccBSI | CCGCTC | 1 cut(s) | 463 |
| AccI | GTMKAC | 2 cut(s) | 208, 813 |
| AciI | CCGC | 4 cut(s) | 463, 499, 533, 903 |
| AclWI | GGATC | 2 cut(s) | 323, 730 |
| AcvI | CACGTG | 1 cut(s) | 560 |
| AdeI | CACNNNGTG | 1 cut(s) | 671 |
| AfaI | GTAC | 1 cut(s) | 295 |
| AfeI | AGCGCT | 2 cut(s) | 63, 74 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 449, 450, 475, 476, 508, 590, 655 |
| AflIII | ACRYGT | 2 cut(s) | 557, 705 |
| AgsI | TTSAA | 7 cut(s) | 119, 148, 396, 407, 742, 774, 874 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 148, 215 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 6 cut(s) | 52, 176, 232, 301, 334, 878 |
| AluI | AGCT | 6 cut(s) | 52, 176, 232, 301, 334, 878 |
| Alw21I | GWGCWC | 3 cut(s) | 303, 676, 894 |
| Alw26I | GTCTC | 1 cut(s) | 840 |
| Alw44I | GTGCAC | 2 cut(s) | 672, 890 |
| AlwI | GGATC | 2 cut(s) | 323, 730 |
| Aor51HI | AGCGCT | 2 cut(s) | 63, 74 |
| AoxI | GGCC | 1 cut(s) | 398 |
| ApaLI | GTGCAC | 2 cut(s) | 672, 890 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| AspS9I | GGNCC | 2 cut(s) | 399, 793 |
| AsuHPI | GGTGA | 2 cut(s) | 439, 850 |
| AvaII | GGWCC | 1 cut(s) | 793 |
| AxyI | CCTNAGG | 2 cut(s) | 654, 797 |
| BaeGI | GKGCMC | 2 cut(s) | 676, 894 |
| BanI | GGYRCC | 2 cut(s) | 599, 641 |
| BanII | GRGCYC | 1 cut(s) | 303 |
| BauI | CACGAG | 3 cut(s) | 319, 377, 609 |
| BbrPI | CACGTG | 1 cut(s) | 560 |
| Bbv12I | GWGCWC | 3 cut(s) | 303, 676, 894 |
| BciVI | GTATCC | 1 cut(s) | 590 |
| BcoDI | GTCTC | 1 cut(s) | 840 |
| BfaI | CTAG | 2 cut(s) | 65, 585 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BfoI | RGCGCY | 2 cut(s) | 65, 76 |
| BfuI | GTATCC | 1 cut(s) | 590 |
| BisI | GCNGC | 1 cut(s) | 903 |
| BlsI | GCNGC | 1 cut(s) | 904 |
| Bme18I | GGWCC | 1 cut(s) | 793 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 148, 215 |
| BmgT120I | GGNCC | 2 cut(s) | 399, 793 |
| BmiI | GGNNCC | 5 cut(s) | 467, 601, 622, 643, 794 |
| BmsI | GCATC | 3 cut(s) | 31, 721, 889 |
| Bsa29I | ATCGAT | 1 cut(s) | 715 |
| BsaAI | YACGTR | 2 cut(s) | 542, 560 |
| BsaBI | GATNNNNATC | 1 cut(s) | 721 |
| BsaJI | CCNNGG | 1 cut(s) | 603 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 14, 44 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 449, 450, 475, 476, 508, 590, 655 |
| Bse1I | ACTGG | 1 cut(s) | 771 |
| Bse21I | CCTNAGG | 2 cut(s) | 654, 797 |
| Bse3DI | GCAATG | 3 cut(s) | 88, 556, 752 |
| Bse8I | GATNNNNATC | 1 cut(s) | 721 |
| BseCI | ATCGAT | 1 cut(s) | 715 |
| BseDI | CCNNGG | 1 cut(s) | 603 |
| BseGI | GGATG | 1 cut(s) | 904 |
| BseJI | GATNNNNATC | 1 cut(s) | 721 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 449, 450, 475, 476, 508, 590, 655 |
| BseMI | GCAATG | 3 cut(s) | 88, 556, 752 |
| BseMII | CTCAG | 3 cut(s) | 28, 288, 788 |
| BseNI | ACTGG | 1 cut(s) | 771 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 2 cut(s) | 676, 894 |
| BshFI | GGCC | 1 cut(s) | 400 |
| BshNI | GGYRCC | 2 cut(s) | 599, 641 |
| BshVI | ATCGAT | 1 cut(s) | 715 |
| BsiHKAI | GWGCWC | 3 cut(s) | 303, 676, 894 |
| BslFI | GGGAC | 2 cut(s) | 492, 806 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 449, 450, 475, 476, 508, 590, 655 |
| BsmAI | GTCTC | 1 cut(s) | 840 |
| BsmBI | CGTCTC | 1 cut(s) | 840 |
| BsmFI | GGGAC | 2 cut(s) | 492, 806 |
| BsnI | GGCC | 1 cut(s) | 400 |
| Bsp1286I | GDGCHC | 3 cut(s) | 303, 676, 894 |
| Bsp143I | GATC | 3 cut(s) | 33, 315, 722 |
| Bsp19I | CCATGG | 1 cut(s) | 603 |
| BspACI | CCGC | 4 cut(s) | 463, 499, 533, 903 |
| BspANI | GGCC | 1 cut(s) | 400 |
| BspCNI | CTCAG | 3 cut(s) | 27, 289, 789 |
| BspDI | ATCGAT | 1 cut(s) | 715 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 5 cut(s) | 467, 601, 622, 643, 794 |
| BspPI | GGATC | 2 cut(s) | 323, 730 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 183 |
| BspT107I | GGYRCC | 2 cut(s) | 599, 641 |
| BsrBI | CCGCTC | 1 cut(s) | 463 |
| BsrDI | GCAATG | 3 cut(s) | 88, 556, 752 |
| BsrI | ACTGG | 1 cut(s) | 771 |
| BssECI | CCNNGG | 1 cut(s) | 603 |
| BssMI | GATC | 3 cut(s) | 33, 315, 722 |
| BssNAI | GTATAC | 1 cut(s) | 814 |
| BssSI | CACGAG | 3 cut(s) | 319, 377, 609 |
| BssT1I | CCWWGG | 1 cut(s) | 603 |
| Bst1107I | GTATAC | 1 cut(s) | 814 |
| Bst2BI | CACGAG | 3 cut(s) | 319, 377, 609 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 183 |
| BstBAI | YACGTR | 2 cut(s) | 542, 560 |
| BstC8I | GCNNGC | 2 cut(s) | 757, 761 |
| BstDEI | CTNAG | 5 cut(s) | 14, 297, 411, 654, 797 |
| BstDSI | CCRYGG | 1 cut(s) | 603 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 653 |
| BstF5I | GGATG | 1 cut(s) | 904 |
| BstH2I | RGCGCY | 2 cut(s) | 65, 76 |
| BstHHI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| BstKTI | GATC | 3 cut(s) | 36, 318, 725 |
| BstMAI | GTCTC | 1 cut(s) | 840 |
| BstMBI | GATC | 3 cut(s) | 33, 315, 722 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 70, 460 |
| BstNSI | RCATGY | 1 cut(s) | 709 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstSLI | GKGCMC | 2 cut(s) | 676, 894 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 527 |
| BstZ17I | GTATAC | 1 cut(s) | 814 |
| Bsu15I | ATCGAT | 1 cut(s) | 715 |
| Bsu36I | CCTNAGG | 2 cut(s) | 654, 797 |
| BsuI | GTATCC | 1 cut(s) | 590 |
| BsuRI | GGCC | 1 cut(s) | 400 |
| BsuTUI | ATCGAT | 1 cut(s) | 715 |
| BtgI | CCRYGG | 1 cut(s) | 603 |
| BtsCI | GGATG | 1 cut(s) | 904 |
| Cac8I | GCNNGC | 2 cut(s) | 757, 761 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CfoI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| Cfr13I | GGNCC | 2 cut(s) | 399, 793 |
| ClaI | ATCGAT | 1 cut(s) | 715 |
| Csp6I | GTAC | 1 cut(s) | 294 |
| CviAII | CATG | 6 cut(s) | 193, 365, 422, 575, 604, 706 |
| CviQI | GTAC | 1 cut(s) | 294 |
| DdeI | CTNAG | 5 cut(s) | 14, 297, 411, 654, 797 |
| DpnI | GATC | 3 cut(s) | 35, 317, 724 |
| DpnII | GATC | 3 cut(s) | 33, 315, 722 |
| DraIII | CACNNNGTG | 1 cut(s) | 671 |
| DriI | GACNNNNNGTC | 2 cut(s) | 148, 215 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 183 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 148, 215 |
| EarI | CTCTTC | 2 cut(s) | 63, 183 |
| Ecl136II | GAGCTC | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 1 cut(s) | 603 |
| Eco24I | GRGCYC | 1 cut(s) | 303 |
| Eco47I | GGWCC | 1 cut(s) | 793 |
| Eco47III | AGCGCT | 2 cut(s) | 63, 74 |
| Eco53kI | GAGCTC | 1 cut(s) | 301 |
| Eco72I | CACGTG | 1 cut(s) | 560 |
| Eco81I | CCTNAGG | 2 cut(s) | 654, 797 |
| EcoICRI | GAGCTC | 1 cut(s) | 301 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 653 |
| EcoO109I | RGGNCCY | 1 cut(s) | 793 |
| EcoT14I | CCWWGG | 1 cut(s) | 603 |
| EcoT38I | GRGCYC | 1 cut(s) | 303 |
| ErhI | CCWWGG | 1 cut(s) | 603 |
| Esp3I | CGTCTC | 1 cut(s) | 840 |
| FaeI | CATG | 6 cut(s) | 196, 368, 425, 578, 607, 709 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 801, 833 |
| FaqI | GGGAC | 2 cut(s) | 492, 806 |
| FatI | CATG | 6 cut(s) | 192, 364, 421, 574, 603, 705 |
| FblI | GTMKAC | 2 cut(s) | 208, 813 |
| Fnu4HI | GCNGC | 1 cut(s) | 903 |
| FokI | GGATG | 1 cut(s) | 911 |
| FriOI | GRGCYC | 1 cut(s) | 303 |
| Fsp4HI | GCNGC | 1 cut(s) | 903 |
| FspBI | CTAG | 2 cut(s) | 65, 585 |
| GlaI | GCGC | 4 cut(s) | 63, 74, 134, 455 |
| GluI | GCNGC | 1 cut(s) | 903 |
| HaeII | RGCGCY | 2 cut(s) | 65, 76 |
| HaeIII | GGCC | 1 cut(s) | 400 |
| HhaI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| Hin1II | CATG | 6 cut(s) | 196, 368, 425, 578, 607, 709 |
| Hin6I | GCGC | 4 cut(s) | 62, 73, 133, 454 |
| HinP1I | GCGC | 4 cut(s) | 62, 73, 133, 454 |
| HinfI | GANTC | 1 cut(s) | 92 |
| HphI | GGTGA | 2 cut(s) | 439, 850 |
| Hpy166II | GTNNAC | 4 cut(s) | 209, 674, 814, 892 |
| Hpy188I | TCNGA | 2 cut(s) | 17, 172 |
| Hpy188III | TCNNGA | 4 cut(s) | 319, 379, 422, 774 |
| Hpy8I | GTNNAC | 4 cut(s) | 209, 674, 814, 892 |
| HpyAV | CCTTC | 3 cut(s) | 265, 506, 659 |
| HpyCH4IV | ACGT | 5 cut(s) | 481, 541, 559, 670, 849 |
| HpyCH4V | TGCA | 5 cut(s) | 44, 440, 674, 821, 892 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 70, 460 |
| HpyF3I | CTNAG | 5 cut(s) | 14, 297, 411, 654, 797 |
| HpySE526I | ACGT | 5 cut(s) | 481, 541, 559, 670, 849 |
| Hsp92II | CATG | 6 cut(s) | 196, 368, 425, 578, 607, 709 |
| HspAI | GCGC | 4 cut(s) | 62, 73, 133, 454 |
| Kzo9I | GATC | 3 cut(s) | 33, 315, 722 |
| LguI | GCTCTTC | 2 cut(s) | 63, 183 |
| LmnI | GCTCC | 3 cut(s) | 460, 626, 802 |
| LpnPI | CCDG | 7 cut(s) | 117, 228, 294, 752, 766, 775, 809 |
| LweI | GCATC | 3 cut(s) | 31, 721, 889 |
| MaeI | CTAG | 2 cut(s) | 65, 585 |
| MaeII | ACGT | 5 cut(s) | 481, 541, 559, 670, 849 |
| MaeIII | GTNAC | 2 cut(s) | 154, 217 |
| MalI | GATC | 3 cut(s) | 35, 317, 724 |
| MbiI | CCGCTC | 1 cut(s) | 463 |
| MboI | GATC | 3 cut(s) | 33, 315, 722 |
| MboII | GAAGA | 6 cut(s) | 80, 170, 836, 839, 842, 845 |
| MhlI | GDGCHC | 3 cut(s) | 303, 676, 894 |
| MluCI | AATT | 6 cut(s) | 166, 234, 385, 391, 430, 680 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 3 cut(s) | 110, 683, 852 |
| MslI | CAYNNNNRTG | 3 cut(s) | 377, 717, 897 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 70, 460 |
| NcoI | CCATGG | 1 cut(s) | 603 |
| NdeII | GATC | 3 cut(s) | 33, 315, 722 |
| NlaIII | CATG | 6 cut(s) | 196, 368, 425, 578, 607, 709 |
| NlaIV | GGNNCC | 5 cut(s) | 467, 601, 622, 643, 794 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| NspI | RCATGY | 1 cut(s) | 709 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PciI | ACATGT | 1 cut(s) | 705 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 183 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 904 |
| PmaCI | CACGTG | 1 cut(s) | 560 |
| PmlI | CACGTG | 1 cut(s) | 560 |
| Ppu21I | YACGTR | 2 cut(s) | 542, 560 |
| PpuMI | RGGWCCY | 1 cut(s) | 793 |
| PscI | ACATGT | 1 cut(s) | 705 |
| PsiI | TTATAA | 2 cut(s) | 390, 435 |
| Psp124BI | GAGCTC | 1 cut(s) | 303 |
| Psp5II | RGGWCCY | 1 cut(s) | 793 |
| PspCI | CACGTG | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 5 cut(s) | 467, 601, 622, 643, 794 |
| PspPI | GGNCC | 2 cut(s) | 399, 793 |
| PspPPI | RGGWCCY | 1 cut(s) | 793 |
| RsaI | GTAC | 1 cut(s) | 295 |
| RsaNI | GTAC | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 3 cut(s) | 377, 717, 897 |
| SacI | GAGCTC | 1 cut(s) | 303 |
| SapI | GCTCTTC | 2 cut(s) | 63, 183 |
| SaqAI | TTAA | 3 cut(s) | 110, 683, 852 |
| SatI | GCNGC | 1 cut(s) | 903 |
| Sau3AI | GATC | 3 cut(s) | 33, 315, 722 |
| Sau96I | GGNCC | 2 cut(s) | 399, 793 |
| SduI | GDGCHC | 3 cut(s) | 303, 676, 894 |
| SfaNI | GCATC | 3 cut(s) | 31, 721, 889 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SinI | GGWCC | 1 cut(s) | 793 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 377, 717, 897 |
| Sse9I | AATT | 6 cut(s) | 166, 234, 385, 391, 430, 680 |
| SsiI | CCGC | 4 cut(s) | 463, 499, 533, 903 |
| SspMI | CTAG | 2 cut(s) | 65, 585 |
| SstI | GAGCTC | 1 cut(s) | 303 |
| StyI | CCWWGG | 1 cut(s) | 603 |
| TaiI | ACGT | 5 cut(s) | 484, 544, 562, 673, 852 |
| TaqI | TCGA | 2 cut(s) | 32, 715 |
| TasI | AATT | 6 cut(s) | 166, 234, 385, 391, 430, 680 |
| TauI | GCSGC | 1 cut(s) | 905 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 3 cut(s) | 110, 683, 852 |
| Tru9I | TTAA | 3 cut(s) | 110, 683, 852 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 3 cut(s) | 410, 480, 900 |
| TspGWI | ACGGA | 2 cut(s) | 328, 702 |
| VneI | GTGCAC | 2 cut(s) | 672, 890 |
| VpaK11BI | GGWCC | 1 cut(s) | 793 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 653 |
| XceI | RCATGY | 1 cut(s) | 709 |
| XmiI | GTMKAC | 2 cut(s) | 208, 813 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 2 cut(s) | 65, 585 |