B-Box-type zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 350 |
| AccI | GTMKAC | 2 cut(s) | 329, 533 |
| AccII | CGCG | 1 cut(s) | 485 |
| AciI | CCGC | 7 cut(s) | 338, 350, 404, 410, 485, 516, 665 |
| AclWI | GGATC | 1 cut(s) | 583 |
| AcoI | YGGCCR | 1 cut(s) | 594 |
| AcyI | GRCGYC | 2 cut(s) | 342, 488 |
| AfaI | GTAC | 3 cut(s) | 26, 251, 358 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 119, 457 |
| AflIII | ACRYGT | 1 cut(s) | 536 |
| AgsI | TTSAA | 1 cut(s) | 247 |
| AjiI | CACGTC | 1 cut(s) | 537 |
| AjnI | CCWGG | 2 cut(s) | 27, 591 |
| AluBI | AGCT | 4 cut(s) | 323, 586, 610, 649 |
| AluI | AGCT | 4 cut(s) | 323, 586, 610, 649 |
| Alw26I | GTCTC | 1 cut(s) | 502 |
| AlwI | GGATC | 1 cut(s) | 583 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 547 |
| Ama87I | CYCGRG | 2 cut(s) | 287, 644 |
| AoxI | GGCC | 4 cut(s) | 192, 448, 594, 641 |
| ApeKI | GCWGC | 2 cut(s) | 323, 454 |
| AspS9I | GGNCC | 2 cut(s) | 448, 642 |
| AsuC2I | CCSGG | 3 cut(s) | 288, 289, 459 |
| AsuHPI | GGTGA | 3 cut(s) | 64, 407, 517 |
| AvaI | CYCGRG | 2 cut(s) | 287, 644 |
| BaeGI | GKGCMC | 1 cut(s) | 113 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 348, 381 |
| BbsI | GAAGAC | 1 cut(s) | 31 |
| BbvI | GCAGC | 2 cut(s) | 310, 441 |
| BceAI | ACGGC | 2 cut(s) | 451, 581 |
| BciT130I | CCWGG | 2 cut(s) | 29, 593 |
| BcnI | CCSGG | 3 cut(s) | 288, 289, 459 |
| BcoDI | GTCTC | 1 cut(s) | 502 |
| BfaI | CTAG | 2 cut(s) | 180, 650 |
| BisI | GCNGC | 3 cut(s) | 324, 455, 486 |
| BlsI | GCNGC | 3 cut(s) | 325, 456, 487 |
| Bme1390I | CCNGG | 5 cut(s) | 29, 288, 289, 459, 593 |
| BmeT110I | CYCGRG | 2 cut(s) | 287, 644 |
| BmgBI | CACGTC | 1 cut(s) | 537 |
| BmgT120I | GGNCC | 2 cut(s) | 448, 642 |
| BmiI | GGNNCC | 1 cut(s) | 521 |
| BmrFI | CCNGG | 5 cut(s) | 29, 288, 289, 459, 593 |
| BmsI | GCATC | 1 cut(s) | 592 |
| BpiI | GAAGAC | 1 cut(s) | 31 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 465, 497 |
| BpuMI | CCSGG | 3 cut(s) | 288, 289, 459 |
| BsaHI | GRCGYC | 2 cut(s) | 342, 488 |
| BsaJI | CCNNGG | 2 cut(s) | 287, 523 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 119, 457 |
| Bse118I | RCCGGY | 2 cut(s) | 450, 577 |
| BseBI | CCWGG | 2 cut(s) | 29, 593 |
| BseDI | CCNNGG | 2 cut(s) | 287, 523 |
| BseGI | GGATG | 1 cut(s) | 393 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 119, 457 |
| BseMII | CTCAG | 1 cut(s) | 539 |
| BseRI | GAGGAG | 4 cut(s) | 316, 575, 646, 668 |
| BseSI | GKGCMC | 1 cut(s) | 113 |
| BseXI | GCAGC | 2 cut(s) | 310, 441 |
| BseYI | CCCAGC | 2 cut(s) | 382, 660 |
| BsgI | GTGCAG | 1 cut(s) | 329 |
| Bsh1236I | CGCG | 1 cut(s) | 485 |
| BshFI | GGCC | 4 cut(s) | 194, 450, 596, 643 |
| BsiHKCI | CYCGRG | 2 cut(s) | 287, 644 |
| BsiSI | CCGG | 4 cut(s) | 288, 451, 458, 578 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 119, 457 |
| BsmAI | GTCTC | 1 cut(s) | 502 |
| BsnI | GGCC | 4 cut(s) | 194, 450, 596, 643 |
| BsoBI | CYCGRG | 2 cut(s) | 287, 644 |
| Bsp1286I | GDGCHC | 1 cut(s) | 113 |
| Bsp143I | GATC | 1 cut(s) | 588 |
| BspACI | CCGC | 7 cut(s) | 338, 350, 404, 410, 485, 516, 665 |
| BspANI | GGCC | 4 cut(s) | 194, 450, 596, 643 |
| BspCNI | CTCAG | 1 cut(s) | 540 |
| BspFNI | CGCG | 1 cut(s) | 485 |
| BspLI | GGNNCC | 1 cut(s) | 521 |
| BspPI | GGATC | 1 cut(s) | 583 |
| BsrBI | CCGCTC | 1 cut(s) | 350 |
| BsrFI | RCCGGY | 2 cut(s) | 450, 577 |
| BssAI | RCCGGY | 2 cut(s) | 450, 577 |
| BssECI | CCNNGG | 2 cut(s) | 287, 523 |
| BssMI | GATC | 1 cut(s) | 588 |
| BssNI | GRCGYC | 2 cut(s) | 342, 488 |
| Bst2UI | CCWGG | 2 cut(s) | 29, 593 |
| Bst4CI | ACNGT | 1 cut(s) | 628 |
| Bst6I | CTCTTC | 1 cut(s) | 293 |
| BstACI | GRCGYC | 2 cut(s) | 342, 488 |
| BstC8I | GCNNGC | 8 cut(s) | 159, 237, 321, 429, 452, 464, 483, 579 |
| BstDEI | CTNAG | 1 cut(s) | 548 |
| BstF5I | GGATG | 1 cut(s) | 393 |
| BstFNI | CGCG | 1 cut(s) | 485 |
| BstKTI | GATC | 1 cut(s) | 591 |
| BstMAI | GTCTC | 1 cut(s) | 502 |
| BstMBI | GATC | 1 cut(s) | 588 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 316, 428, 463, 583, 602 |
| BstNI | CCWGG | 2 cut(s) | 29, 593 |
| BstNSI | RCATGY | 2 cut(s) | 161, 431 |
| BstSCI | CCNGG | 5 cut(s) | 27, 286, 287, 457, 591 |
| BstSLI | GKGCMC | 1 cut(s) | 113 |
| BstUI | CGCG | 1 cut(s) | 485 |
| BstV1I | GCAGC | 2 cut(s) | 310, 441 |
| BstV2I | GAAGAC | 1 cut(s) | 31 |
| BsuRI | GGCC | 4 cut(s) | 194, 450, 596, 643 |
| BtrI | CACGTC | 1 cut(s) | 537 |
| BtsCI | GGATG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| Cac8I | GCNNGC | 8 cut(s) | 159, 237, 321, 429, 452, 464, 483, 579 |
| CaiI | CAGNNNCTG | 1 cut(s) | 547 |
| Cfr10I | RCCGGY | 2 cut(s) | 450, 577 |
| Cfr13I | GGNCC | 2 cut(s) | 448, 642 |
| Cfr9I | CCCGGG | 1 cut(s) | 287 |
| CseI | GACGC | 3 cut(s) | 315, 350, 477 |
| Csp6I | GTAC | 3 cut(s) | 25, 250, 357 |
| CviAII | CATG | 3 cut(s) | 76, 158, 428 |
| CviQI | GTAC | 3 cut(s) | 25, 250, 357 |
| DdeI | CTNAG | 1 cut(s) | 548 |
| DpnI | GATC | 1 cut(s) | 590 |
| DpnII | GATC | 1 cut(s) | 588 |
| EaeI | YGGCCR | 1 cut(s) | 594 |
| Eam1104I | CTCTTC | 1 cut(s) | 293 |
| EarI | CTCTTC | 1 cut(s) | 293 |
| Eco32I | GATATC | 1 cut(s) | 567 |
| Eco88I | CYCGRG | 2 cut(s) | 287, 644 |
| EcoRII | CCWGG | 2 cut(s) | 27, 591 |
| EcoRV | GATATC | 1 cut(s) | 567 |
| FaeI | CATG | 3 cut(s) | 79, 161, 431 |
| FatI | CATG | 3 cut(s) | 75, 157, 427 |
| FauI | CCCGC | 1 cut(s) | 509 |
| FauNDI | CATATG | 1 cut(s) | 197 |
| FblI | GTMKAC | 2 cut(s) | 329, 533 |
| Fnu4HI | GCNGC | 3 cut(s) | 324, 455, 486 |
| FokI | GGATG | 1 cut(s) | 400 |
| Fsp4HI | GCNGC | 3 cut(s) | 324, 455, 486 |
| FspBI | CTAG | 2 cut(s) | 180, 650 |
| GluI | GCNGC | 3 cut(s) | 324, 455, 486 |
| GsaI | CCCAGC | 2 cut(s) | 386, 664 |
| HaeIII | GGCC | 4 cut(s) | 194, 450, 596, 643 |
| HapII | CCGG | 4 cut(s) | 288, 451, 458, 578 |
| HgaI | GACGC | 3 cut(s) | 315, 350, 477 |
| Hin1I | GRCGYC | 2 cut(s) | 342, 488 |
| Hin1II | CATG | 3 cut(s) | 79, 161, 431 |
| HincII | GTYRAC | 3 cut(s) | 223, 330, 534 |
| HindII | GTYRAC | 3 cut(s) | 223, 330, 534 |
| HinfI | GANTC | 3 cut(s) | 398, 510, 544 |
| HpaI | GTTAAC | 1 cut(s) | 223 |
| HpaII | CCGG | 4 cut(s) | 288, 451, 458, 578 |
| HphI | GGTGA | 3 cut(s) | 64, 407, 517 |
| Hpy166II | GTNNAC | 5 cut(s) | 25, 223, 294, 330, 534 |
| Hpy188I | TCNGA | 3 cut(s) | 543, 549, 614 |
| Hpy188III | TCNNGA | 1 cut(s) | 570 |
| Hpy8I | GTNNAC | 5 cut(s) | 25, 223, 294, 330, 534 |
| Hpy99I | CGWCG | 4 cut(s) | 331, 334, 493, 538 |
| HpyAV | CCTTC | 1 cut(s) | 546 |
| HpyCH4III | ACNGT | 1 cut(s) | 628 |
| HpyCH4IV | ACGT | 1 cut(s) | 536 |
| HpyCH4V | TGCA | 6 cut(s) | 89, 119, 161, 310, 375, 427 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 316, 428, 463, 583, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 548 |
| HpySE526I | ACGT | 1 cut(s) | 536 |
| Hsp92I | GRCGYC | 2 cut(s) | 342, 488 |
| Hsp92II | CATG | 3 cut(s) | 79, 161, 431 |
| KroI | GCCGGC | 2 cut(s) | 450, 577 |
| KroNI | GCCGGC | 2 cut(s) | 452, 579 |
| KspAI | GTTAAC | 1 cut(s) | 223 |
| Kzo9I | GATC | 1 cut(s) | 588 |
| Lsp1109I | GCAGC | 2 cut(s) | 310, 441 |
| LweI | GCATC | 1 cut(s) | 592 |
| MaeI | CTAG | 2 cut(s) | 180, 650 |
| MaeII | ACGT | 1 cut(s) | 536 |
| MalI | GATC | 1 cut(s) | 590 |
| MbiI | CCGCTC | 1 cut(s) | 350 |
| MboI | GATC | 1 cut(s) | 588 |
| MboII | GAAGA | 4 cut(s) | 31, 63, 106, 310 |
| MhlI | GDGCHC | 1 cut(s) | 113 |
| MluCI | AATT | 1 cut(s) | 367 |
| MlyI | GAGTC | 1 cut(s) | 504 |
| MroNI | GCCGGC | 2 cut(s) | 450, 577 |
| MseI | TTAA | 2 cut(s) | 147, 222 |
| MslI | CAYNNNNRTG | 1 cut(s) | 156 |
| MspI | CCGG | 4 cut(s) | 288, 451, 458, 578 |
| MspR9I | CCNGG | 5 cut(s) | 29, 288, 289, 459, 593 |
| MvaI | CCWGG | 2 cut(s) | 29, 593 |
| MvnI | CGCG | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 316, 428, 463, 583, 602 |
| NaeI | GCCGGC | 2 cut(s) | 452, 579 |
| NciI | CCSGG | 3 cut(s) | 288, 289, 459 |
| NdeI | CATATG | 1 cut(s) | 197 |
| NdeII | GATC | 1 cut(s) | 588 |
| NgoMIV | GCCGGC | 2 cut(s) | 450, 577 |
| NlaIII | CATG | 3 cut(s) | 79, 161, 431 |
| NlaIV | GGNNCC | 1 cut(s) | 521 |
| NspI | RCATGY | 2 cut(s) | 161, 431 |
| PaeI | GCATGC | 2 cut(s) | 161, 431 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 485 |
| PdiI | GCCGGC | 2 cut(s) | 452, 579 |
| PfeI | GAWTC | 2 cut(s) | 398, 544 |
| PkrI | GCNGC | 3 cut(s) | 325, 456, 487 |
| PleI | GAGTC | 1 cut(s) | 504 |
| PpsI | GAGTC | 1 cut(s) | 504 |
| Psp6I | CCWGG | 2 cut(s) | 27, 591 |
| PspFI | CCCAGC | 2 cut(s) | 382, 660 |
| PspGI | CCWGG | 2 cut(s) | 27, 591 |
| PspN4I | GGNNCC | 1 cut(s) | 521 |
| PspPI | GGNCC | 2 cut(s) | 448, 642 |
| PstNI | CAGNNNCTG | 1 cut(s) | 547 |
| RsaI | GTAC | 3 cut(s) | 26, 251, 358 |
| RsaNI | GTAC | 3 cut(s) | 25, 250, 357 |
| RseI | CAYNNNNRTG | 1 cut(s) | 156 |
| SalI | GTCGAC | 2 cut(s) | 328, 532 |
| SaqAI | TTAA | 2 cut(s) | 147, 222 |
| SatI | GCNGC | 3 cut(s) | 324, 455, 486 |
| Sau3AI | GATC | 1 cut(s) | 588 |
| Sau96I | GGNCC | 2 cut(s) | 448, 642 |
| SchI | GAGTC | 1 cut(s) | 504 |
| ScrFI | CCNGG | 5 cut(s) | 29, 288, 289, 459, 593 |
| SduI | GDGCHC | 1 cut(s) | 113 |
| SetI | ASST | 8 cut(s) | 36, 170, 222, 325, 539, 588, 612, 651 |
| SfaNI | GCATC | 1 cut(s) | 592 |
| SgrDI | CGTCGACG | 1 cut(s) | 328 |
| SmaI | CCCGGG | 1 cut(s) | 289 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 156 |
| SphI | GCATGC | 2 cut(s) | 161, 431 |
| Sse9I | AATT | 1 cut(s) | 367 |
| SsiI | CCGC | 7 cut(s) | 338, 350, 404, 410, 485, 516, 665 |
| SspMI | CTAG | 2 cut(s) | 180, 650 |
| StyD4I | CCNGG | 5 cut(s) | 27, 286, 287, 457, 591 |
| TaaI | ACNGT | 1 cut(s) | 628 |
| TaiI | ACGT | 1 cut(s) | 539 |
| TaqI | TCGA | 3 cut(s) | 9, 329, 533 |
| TasI | AATT | 1 cut(s) | 367 |
| TatI | WGTACW | 1 cut(s) | 249 |
| TauI | GCSGC | 1 cut(s) | 488 |
| TfiI | GAWTC | 2 cut(s) | 398, 544 |
| Tru1I | TTAA | 2 cut(s) | 147, 222 |
| Tru9I | TTAA | 2 cut(s) | 147, 222 |
| TscAI | CASTG | 1 cut(s) | 633 |
| TseI | GCWGC | 2 cut(s) | 323, 454 |
| TspMI | CCCGGG | 1 cut(s) | 287 |
| TspRI | CASTG | 1 cut(s) | 633 |
| XceI | RCATGY | 2 cut(s) | 161, 431 |
| XmaI | CCCGGG | 1 cut(s) | 287 |
| XmiI | GTMKAC | 2 cut(s) | 329, 533 |
| XspI | CTAG | 2 cut(s) | 180, 650 |