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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 2 cut(s) | 468, 563 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 1 cut(s) | 705 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcoI | YGGCCR | 1 cut(s) | 550 |
| AcyI | GRCGYC | 1 cut(s) | 564 |
| AdeI | CACNNNGTG | 1 cut(s) | 745 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 464 |
| AgsI | TTSAA | 3 cut(s) | 160, 371, 601 |
| AleI | CACNNNNGTG | 2 cut(s) | 150, 389 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 686, 737 |
| AluI | AGCT | 4 cut(s) | 346, 356, 686, 737 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 688 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 1 cut(s) | 405 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| AoxI | GGCC | 1 cut(s) | 550 |
| AseI | ATTAAT | 1 cut(s) | 284 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 566 |
| AsuHPI | GGTGA | 1 cut(s) | 694 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BalI | TGGCCA | 1 cut(s) | 552 |
| BanI | GGYRCC | 2 cut(s) | 468, 563 |
| BanII | GRGCYC | 2 cut(s) | 348, 688 |
| BauI | CACGAG | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 688 |
| BccI | CCATC | 2 cut(s) | 126, 591 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 2 cut(s) | 122, 773 |
| BfoI | RGCGCY | 1 cut(s) | 567 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BmiI | GGNNCC | 2 cut(s) | 470, 565 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 1 cut(s) | 62 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 564 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 464 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 464 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BshFI | GGCC | 1 cut(s) | 552 |
| BshNI | GGYRCC | 2 cut(s) | 468, 563 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 688 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 464 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 552 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 673, 688 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp143I | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| BspACI | CCGC | 1 cut(s) | 705 |
| BspANI | GGCC | 1 cut(s) | 552 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 470, 565 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 563 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| BssNI | GRCGYC | 1 cut(s) | 564 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| BstACI | GRCGYC | 1 cut(s) | 564 |
| BstDEI | CTNAG | 4 cut(s) | 294, 459, 491, 576 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 462 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 567 |
| BstHHI | GCGC | 1 cut(s) | 566 |
| BstKTI | GATC | 5 cut(s) | 231, 413, 664, 760, 772 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 713, 734 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuRI | GGCC | 1 cut(s) | 552 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 566 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 602 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 341, 377, 554 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 346, 356, 450, 552, 582, 686, 737 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 346, 356, 450, 552, 582, 686, 737 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 4 cut(s) | 294, 459, 491, 576 |
| DinI | GGCGCC | 1 cut(s) | 565 |
| DpnI | GATC | 5 cut(s) | 230, 412, 663, 759, 771 |
| DpnII | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| DraIII | CACNNNGTG | 1 cut(s) | 745 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 550 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 686 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 688 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 686 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 686 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 462 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 688 |
| EgeI | GGCGCC | 1 cut(s) | 565 |
| EheI | GGCGCC | 1 cut(s) | 565 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 344, 380, 557 |
| FatI | CATG | 3 cut(s) | 340, 376, 553 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 2 cut(s) | 348, 688 |
| FspBI | CTAG | 2 cut(s) | 122, 773 |
| GlaI | GCGC | 1 cut(s) | 565 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 567 |
| HaeIII | GGCC | 1 cut(s) | 552 |
| HapII | CCGG | 1 cut(s) | 434 |
| HgaI | GACGC | 1 cut(s) | 602 |
| HhaI | GCGC | 1 cut(s) | 566 |
| Hin1I | GRCGYC | 1 cut(s) | 564 |
| Hin1II | CATG | 3 cut(s) | 344, 380, 557 |
| Hin6I | GCGC | 1 cut(s) | 564 |
| HinP1I | GCGC | 1 cut(s) | 564 |
| HincII | GTYRAC | 1 cut(s) | 518 |
| HindII | GTYRAC | 1 cut(s) | 518 |
| HinfI | GANTC | 7 cut(s) | 4, 20, 104, 212, 256, 327, 437 |
| HpaII | CCGG | 1 cut(s) | 434 |
| HphI | GGTGA | 1 cut(s) | 694 |
| Hpy166II | GTNNAC | 1 cut(s) | 518 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 661 |
| Hpy8I | GTNNAC | 1 cut(s) | 518 |
| HpyAV | CCTTC | 2 cut(s) | 54, 277 |
| HpyCH4IV | ACGT | 4 cut(s) | 96, 126, 508, 520 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 713, 734 |
| HpyF3I | CTNAG | 4 cut(s) | 294, 459, 491, 576 |
| HpySE526I | ACGT | 4 cut(s) | 96, 126, 508, 520 |
| Hsp92I | GRCGYC | 1 cut(s) | 564 |
| Hsp92II | CATG | 3 cut(s) | 344, 380, 557 |
| HspAI | GCGC | 1 cut(s) | 564 |
| KasI | GGCGCC | 1 cut(s) | 563 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LpnPI | CCDG | 8 cut(s) | 41, 70, 129, 229, 447, 489, 498, 534 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 2 cut(s) | 122, 773 |
| MaeII | ACGT | 4 cut(s) | 96, 126, 508, 520 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 5 cut(s) | 230, 412, 663, 759, 771 |
| MboI | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| MboII | GAAGA | 6 cut(s) | 59, 265, 406, 704, 767, 776 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 3 cut(s) | 348, 673, 688 |
| MlsI | TGGCCA | 1 cut(s) | 552 |
| MluCI | AATT | 2 cut(s) | 403, 442 |
| MluNI | TGGCCA | 1 cut(s) | 552 |
| Mly113I | GGCGCC | 1 cut(s) | 564 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 7 cut(s) | 152, 281, 458, 526, 530, 556, 618 |
| Mox20I | TGGCCA | 1 cut(s) | 552 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 552 |
| MseI | TTAA | 3 cut(s) | 198, 206, 284 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 150, 389, 558, 588 |
| Msp20I | TGGCCA | 1 cut(s) | 552 |
| MspI | CCGG | 1 cut(s) | 434 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 713, 734 |
| NarI | GGCGCC | 1 cut(s) | 564 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| NlaIII | CATG | 3 cut(s) | 344, 380, 557 |
| NlaIV | GGNNCC | 2 cut(s) | 470, 565 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| OliI | CACNNNNGTG | 2 cut(s) | 150, 389 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 4 cut(s) | 20, 212, 327, 437 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 567 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| PshBI | ATTAAT | 1 cut(s) | 284 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 688 |
| PspN4I | GGNNCC | 2 cut(s) | 470, 565 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 150, 389, 558, 588 |
| SacI | GAGCTC | 2 cut(s) | 348, 688 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 284 |
| Sau3AI | GATC | 5 cut(s) | 228, 410, 661, 757, 769 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 3 cut(s) | 348, 673, 688 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfoI | GGCGCC | 1 cut(s) | 565 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 150, 389, 558, 588 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 2 cut(s) | 403, 442 |
| SsiI | CCGC | 1 cut(s) | 705 |
| SspDI | GGCGCC | 1 cut(s) | 563 |
| SspMI | CTAG | 2 cut(s) | 122, 773 |
| SstI | GAGCTC | 2 cut(s) | 348, 688 |
| TaiI | ACGT | 4 cut(s) | 99, 129, 511, 523 |
| TaqI | TCGA | 4 cut(s) | 309, 407, 624, 646 |
| TasI | AATT | 2 cut(s) | 403, 442 |
| TfiI | GAWTC | 4 cut(s) | 20, 212, 327, 437 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 284 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 284 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 89, 403 |
| VspI | ATTAAT | 1 cut(s) | 284 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 462 |
| XbaI | TCTAGA | 1 cut(s) | 772 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 773 |