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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 2 cut(s) | 429, 587 |
| AccII | CGCG | 2 cut(s) | 8, 71 |
| AciI | CCGC | 4 cut(s) | 6, 69, 234, 508 |
| AclWI | GGATC | 2 cut(s) | 296, 366 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 430, 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 769 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 425, 690 |
| AgsI | TTSAA | 2 cut(s) | 121, 625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 41, 73 |
| AluBI | AGCT | 5 cut(s) | 307, 317, 388, 710, 761 |
| AluI | AGCT | 5 cut(s) | 307, 317, 388, 710, 761 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 712 |
| Alw26I | GTCTC | 2 cut(s) | 45, 549 |
| AlwI | GGATC | 2 cut(s) | 296, 366 |
| AoxI | GGCC | 2 cut(s) | 100, 574 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 3 cut(s) | 432, 590, 631 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 1 cut(s) | 718 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 1 cut(s) | 697 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 2 cut(s) | 429, 587 |
| BanII | GRGCYC | 2 cut(s) | 309, 712 |
| BauI | CACGAG | 1 cut(s) | 711 |
| BbsI | GAAGAC | 2 cut(s) | 26, 89 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 712 |
| BccI | CCATC | 2 cut(s) | 241, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 2 cut(s) | 451, 691 |
| BcoDI | GTCTC | 2 cut(s) | 45, 549 |
| BfaI | CTAG | 1 cut(s) | 788 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 3 cut(s) | 433, 591, 632 |
| BfuI | GTATCC | 2 cut(s) | 451, 691 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 3 cut(s) | 431, 530, 589 |
| BpiI | GAAGAC | 2 cut(s) | 26, 89 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 588 |
| BsaI | GGTCTC | 1 cut(s) | 45 |
| BsaWI | WCCGGW | 1 cut(s) | 683 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 425, 690 |
| Bse3DI | GCAATG | 1 cut(s) | 69 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 425, 690 |
| BseMI | GCAATG | 1 cut(s) | 69 |
| BseMII | CTCAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 697 |
| Bsh1236I | CGCG | 2 cut(s) | 8, 71 |
| BshFI | GGCC | 2 cut(s) | 102, 576 |
| BshNI | GGYRCC | 2 cut(s) | 429, 587 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 712 |
| BsiSI | CCGG | 1 cut(s) | 684 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 425, 690 |
| BsmAI | GTCTC | 2 cut(s) | 45, 549 |
| BsnI | GGCC | 2 cut(s) | 102, 576 |
| Bso31I | GGTCTC | 1 cut(s) | 45 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 697, 712 |
| Bsp143I | GATC | 4 cut(s) | 189, 288, 371, 784 |
| BspACI | CCGC | 4 cut(s) | 6, 69, 234, 508 |
| BspANI | GGCC | 2 cut(s) | 102, 576 |
| BspCNI | CTCAG | 1 cut(s) | 640 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspFNI | CGCG | 2 cut(s) | 8, 71 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 3 cut(s) | 431, 530, 589 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 2 cut(s) | 296, 366 |
| BspT107I | GGYRCC | 2 cut(s) | 429, 587 |
| BspTNI | GGTCTC | 1 cut(s) | 45 |
| BsrDI | GCAATG | 1 cut(s) | 69 |
| BssMI | GATC | 4 cut(s) | 189, 288, 371, 784 |
| BssNI | GRCGYC | 2 cut(s) | 430, 588 |
| BssSI | CACGAG | 1 cut(s) | 711 |
| Bst2BI | CACGAG | 1 cut(s) | 711 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 2 cut(s) | 430, 588 |
| BstDEI | CTNAG | 7 cut(s) | 15, 78, 255, 420, 452, 600, 648 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 2 cut(s) | 8, 71 |
| BstH2I | RGCGCY | 3 cut(s) | 433, 591, 632 |
| BstHHI | GCGC | 3 cut(s) | 432, 590, 631 |
| BstKTI | GATC | 4 cut(s) | 192, 291, 374, 787 |
| BstMAI | GTCTC | 2 cut(s) | 45, 549 |
| BstMBI | GATC | 4 cut(s) | 189, 288, 371, 784 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 436, 626, 758 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstSLI | GKGCMC | 1 cut(s) | 697 |
| BstUI | CGCG | 2 cut(s) | 8, 71 |
| BstV2I | GAAGAC | 2 cut(s) | 26, 89 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 2 cut(s) | 451, 691 |
| BsuRI | GGCC | 2 cut(s) | 102, 576 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 3 cut(s) | 432, 590, 631 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 626 |
| CviAII | CATG | 3 cut(s) | 302, 338, 578 |
| DdeI | CTNAG | 7 cut(s) | 15, 78, 255, 420, 452, 600, 648 |
| DinI | GGCGCC | 2 cut(s) | 431, 589 |
| DpnI | GATC | 4 cut(s) | 191, 290, 373, 786 |
| DpnII | GATC | 4 cut(s) | 189, 288, 371, 784 |
| DraIII | CACNNNGTG | 1 cut(s) | 769 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 710 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 712 |
| Eco31I | GGTCTC | 1 cut(s) | 45 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 710 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 710 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 712 |
| EgeI | GGCGCC | 2 cut(s) | 431, 589 |
| EheI | GGCGCC | 2 cut(s) | 431, 589 |
| FaeI | CATG | 3 cut(s) | 305, 341, 581 |
| FatI | CATG | 3 cut(s) | 301, 337, 577 |
| FauI | CCCGC | 1 cut(s) | 241 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 712 |
| FspBI | CTAG | 1 cut(s) | 788 |
| GlaI | GCGC | 3 cut(s) | 431, 589, 630 |
| HaeII | RGCGCY | 3 cut(s) | 433, 591, 632 |
| HaeIII | GGCC | 2 cut(s) | 102, 576 |
| HapII | CCGG | 1 cut(s) | 684 |
| HgaI | GACGC | 1 cut(s) | 626 |
| HhaI | GCGC | 3 cut(s) | 432, 590, 631 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 588 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 581 |
| Hin6I | GCGC | 3 cut(s) | 430, 588, 629 |
| HinP1I | GCGC | 3 cut(s) | 430, 588, 629 |
| HincII | GTYRAC | 1 cut(s) | 542 |
| HindII | GTYRAC | 1 cut(s) | 542 |
| HinfI | GANTC | 4 cut(s) | 10, 73, 267, 644 |
| HpaII | CCGG | 1 cut(s) | 684 |
| HphI | GGTGA | 1 cut(s) | 718 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 649 |
| Hpy188III | TCNNGA | 6 cut(s) | 302, 369, 465, 669, 713, 788 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| HpyAV | CCTTC | 5 cut(s) | 23, 86, 113, 238, 494 |
| HpyCH4IV | ACGT | 2 cut(s) | 469, 544 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 436, 626, 758 |
| HpyF3I | CTNAG | 7 cut(s) | 15, 78, 255, 420, 452, 600, 648 |
| HpySE526I | ACGT | 2 cut(s) | 469, 544 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 588 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 581 |
| HspAI | GCGC | 3 cut(s) | 430, 588, 629 |
| KasI | GGCGCC | 2 cut(s) | 429, 587 |
| Kzo9I | GATC | 4 cut(s) | 189, 288, 371, 784 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 5 cut(s) | 39, 102, 267, 450, 697 |
| MaeI | CTAG | 1 cut(s) | 788 |
| MaeII | ACGT | 2 cut(s) | 469, 544 |
| MaeIII | GTNAC | 5 cut(s) | 274, 325, 410, 503, 724 |
| MalI | GATC | 4 cut(s) | 191, 290, 373, 786 |
| MboI | GATC | 4 cut(s) | 189, 288, 371, 784 |
| MboII | GAAGA | 7 cut(s) | 31, 61, 94, 367, 546, 728, 791 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 3 cut(s) | 309, 697, 712 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 5 cut(s) | 173, 259, 364, 403, 720 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| Mly113I | GGCGCC | 2 cut(s) | 430, 588 |
| MlyI | GAGTC | 3 cut(s) | 4, 67, 653 |
| MmeI | TCCRAC | 1 cut(s) | 292 |
| MnlI | CCTC | 4 cut(s) | 247, 530, 554, 642 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspI | CCGG | 1 cut(s) | 684 |
| MvnI | CGCG | 2 cut(s) | 8, 71 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 436, 626, 758 |
| NarI | GGCGCC | 2 cut(s) | 430, 588 |
| NdeII | GATC | 4 cut(s) | 189, 288, 371, 784 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 581 |
| NlaIV | GGNNCC | 3 cut(s) | 431, 530, 589 |
| NmuCI | GTSAC | 3 cut(s) | 325, 410, 724 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 267 |
| PleI | GAGTC | 3 cut(s) | 4, 67, 652 |
| PluTI | GGCGCC | 2 cut(s) | 433, 591 |
| PpsI | GAGTC | 3 cut(s) | 4, 67, 652 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 712 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 3 cut(s) | 431, 530, 589 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| SacI | GAGCTC | 2 cut(s) | 309, 712 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 4 cut(s) | 189, 288, 371, 784 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 3 cut(s) | 4, 67, 653 |
| SduI | GDGCHC | 3 cut(s) | 309, 697, 712 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 2 cut(s) | 431, 589 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 582, 612 |
| Sse9I | AATT | 5 cut(s) | 173, 259, 364, 403, 720 |
| SsiI | CCGC | 4 cut(s) | 6, 69, 234, 508 |
| SspDI | GGCGCC | 2 cut(s) | 429, 587 |
| SspMI | CTAG | 1 cut(s) | 788 |
| SstI | GAGCTC | 2 cut(s) | 309, 712 |
| TaiI | ACGT | 2 cut(s) | 472, 547 |
| TaqI | TCGA | 5 cut(s) | 47, 265, 270, 368, 670 |
| TasI | AATT | 5 cut(s) | 173, 259, 364, 403, 720 |
| TfiI | GAWTC | 1 cut(s) | 267 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 3 cut(s) | 325, 410, 724 |
| Tsp45I | GTSAC | 3 cut(s) | 325, 410, 724 |
| TspDTI | ATGAA | 2 cut(s) | 290, 335 |
| TspGWI | ACGGA | 3 cut(s) | 301, 364, 541 |
| TspRI | CASTG | 1 cut(s) | 334 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 787 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 788 |