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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 3 cut(s) | 146, 695, 743 |
| AccII | CGCG | 1 cut(s) | 450 |
| AciI | CCGC | 1 cut(s) | 664 |
| AclWI | GGATC | 1 cut(s) | 516 |
| AcoI | YGGCCR | 2 cut(s) | 13, 736 |
| AcyI | GRCGYC | 4 cut(s) | 653, 684, 714, 744 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 328, 734 |
| AflII | CTTAAG | 1 cut(s) | 263 |
| AflIII | ACRYGT | 1 cut(s) | 376 |
| AgsI | TTSAA | 2 cut(s) | 87, 606 |
| AluBI | AGCT | 2 cut(s) | 139, 161 |
| AluI | AGCT | 2 cut(s) | 139, 161 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 1 cut(s) | 516 |
| AoxI | GGCC | 7 cut(s) | 13, 524, 588, 619, 661, 736, 831 |
| AspLEI | GCGC | 3 cut(s) | 452, 746, 818 |
| AspS9I | GGNCC | 5 cut(s) | 308, 440, 524, 588, 620 |
| AvaII | GGWCC | 2 cut(s) | 308, 440 |
| BalI | TGGCCA | 2 cut(s) | 15, 738 |
| BanI | GGYRCC | 3 cut(s) | 146, 695, 743 |
| BanII | GRGCYC | 1 cut(s) | 829 |
| BbsI | GAAGAC | 2 cut(s) | 53, 490 |
| BccI | CCATC | 4 cut(s) | 575, 599, 695, 775 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 201 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BfoI | RGCGCY | 2 cut(s) | 747, 819 |
| BfrI | CTTAAG | 1 cut(s) | 263 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 824 |
| BisI | GCNGC | 1 cut(s) | 664 |
| BlsI | GCNGC | 1 cut(s) | 665 |
| Bme18I | GGWCC | 2 cut(s) | 308, 440 |
| BmgT120I | GGNCC | 5 cut(s) | 308, 440, 524, 588, 620 |
| BmiI | GGNNCC | 6 cut(s) | 148, 461, 476, 697, 745, 769 |
| BpiI | GAAGAC | 2 cut(s) | 53, 490 |
| Bpu10I | CCTNAGC | 1 cut(s) | 828 |
| BsaBI | GATNNNNATC | 2 cut(s) | 38, 507 |
| BsaHI | GRCGYC | 4 cut(s) | 653, 684, 714, 744 |
| BsaJI | CCNNGG | 7 cut(s) | 207, 252, 568, 675, 717, 739, 763 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 777, 807 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 328, 734 |
| Bse8I | GATNNNNATC | 2 cut(s) | 38, 507 |
| BseDI | CCNNGG | 7 cut(s) | 207, 252, 568, 675, 717, 739, 763 |
| BseGI | GGATG | 1 cut(s) | 685 |
| BseJI | GATNNNNATC | 2 cut(s) | 38, 507 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 328, 734 |
| BseYI | CCCAGC | 1 cut(s) | 585 |
| Bsh1236I | CGCG | 1 cut(s) | 450 |
| BshFI | GGCC | 7 cut(s) | 15, 526, 590, 621, 663, 738, 833 |
| BshNI | GGYRCC | 3 cut(s) | 146, 695, 743 |
| BslFI | GGGAC | 1 cut(s) | 664 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 328, 734 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 664 |
| BsmI | GAATGC | 1 cut(s) | 115 |
| BsnI | GGCC | 7 cut(s) | 15, 526, 590, 621, 663, 738, 833 |
| Bsp1286I | GDGCHC | 1 cut(s) | 829 |
| Bsp143I | GATC | 3 cut(s) | 39, 466, 508 |
| Bsp19I | CCATGG | 3 cut(s) | 717, 739, 763 |
| BspACI | CCGC | 1 cut(s) | 664 |
| BspANI | GGCC | 7 cut(s) | 15, 526, 590, 621, 663, 738, 833 |
| BspFNI | CGCG | 1 cut(s) | 450 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 6 cut(s) | 148, 461, 476, 697, 745, 769 |
| BspPI | GGATC | 1 cut(s) | 516 |
| BspT107I | GGYRCC | 3 cut(s) | 146, 695, 743 |
| BspTI | CTTAAG | 1 cut(s) | 263 |
| BssECI | CCNNGG | 7 cut(s) | 207, 252, 568, 675, 717, 739, 763 |
| BssMI | GATC | 3 cut(s) | 39, 466, 508 |
| BssNI | GRCGYC | 4 cut(s) | 653, 684, 714, 744 |
| BssT1I | CCWWGG | 5 cut(s) | 252, 675, 717, 739, 763 |
| Bst6I | CTCTTC | 1 cut(s) | 377 |
| BstACI | GRCGYC | 4 cut(s) | 653, 684, 714, 744 |
| BstAFI | CTTAAG | 1 cut(s) | 263 |
| BstC8I | GCNNGC | 2 cut(s) | 354, 534 |
| BstDEI | CTNAG | 4 cut(s) | 216, 279, 545, 828 |
| BstDSI | CCRYGG | 4 cut(s) | 207, 717, 739, 763 |
| BstF5I | GGATG | 1 cut(s) | 685 |
| BstFNI | CGCG | 1 cut(s) | 450 |
| BstH2I | RGCGCY | 2 cut(s) | 747, 819 |
| BstHHI | GCGC | 3 cut(s) | 452, 746, 818 |
| BstKTI | GATC | 3 cut(s) | 42, 469, 511 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 3 cut(s) | 39, 466, 508 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 824 |
| BstNSI | RCATGY | 1 cut(s) | 356 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstUI | CGCG | 1 cut(s) | 450 |
| BstV2I | GAAGAC | 2 cut(s) | 53, 490 |
| BsuRI | GGCC | 7 cut(s) | 15, 526, 590, 621, 663, 738, 833 |
| BtgI | CCRYGG | 4 cut(s) | 207, 717, 739, 763 |
| BtsCI | GGATG | 1 cut(s) | 685 |
| Cac8I | GCNNGC | 2 cut(s) | 354, 534 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 3 cut(s) | 452, 746, 818 |
| Cfr13I | GGNCC | 5 cut(s) | 308, 440, 524, 588, 620 |
| CseI | GACGC | 3 cut(s) | 661, 692, 722 |
| DdeI | CTNAG | 4 cut(s) | 216, 279, 545, 828 |
| DinI | GGCGCC | 1 cut(s) | 745 |
| DpnI | GATC | 3 cut(s) | 41, 468, 510 |
| DpnII | GATC | 3 cut(s) | 39, 466, 508 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 2 cut(s) | 13, 736 |
| Eam1104I | CTCTTC | 1 cut(s) | 377 |
| EarI | CTCTTC | 1 cut(s) | 377 |
| Eco130I | CCWWGG | 5 cut(s) | 252, 675, 717, 739, 763 |
| Eco147I | AGGCCT | 1 cut(s) | 833 |
| Eco24I | GRGCYC | 1 cut(s) | 829 |
| Eco47I | GGWCC | 2 cut(s) | 308, 440 |
| EcoT14I | CCWWGG | 5 cut(s) | 252, 675, 717, 739, 763 |
| EcoT38I | GRGCYC | 1 cut(s) | 829 |
| EgeI | GGCGCC | 1 cut(s) | 745 |
| EheI | GGCGCC | 1 cut(s) | 745 |
| ErhI | CCWWGG | 5 cut(s) | 252, 675, 717, 739, 763 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaqI | GGGAC | 1 cut(s) | 664 |
| Fnu4HI | GCNGC | 1 cut(s) | 664 |
| FokI | GGATG | 1 cut(s) | 692 |
| FriOI | GRGCYC | 1 cut(s) | 829 |
| Fsp4HI | GCNGC | 1 cut(s) | 664 |
| FspBI | CTAG | 1 cut(s) | 201 |
| GlaI | GCGC | 3 cut(s) | 451, 745, 817 |
| GluI | GCNGC | 1 cut(s) | 664 |
| GsaI | CCCAGC | 1 cut(s) | 589 |
| HaeII | RGCGCY | 2 cut(s) | 747, 819 |
| HaeIII | GGCC | 7 cut(s) | 15, 526, 590, 621, 663, 738, 833 |
| HgaI | GACGC | 3 cut(s) | 661, 692, 722 |
| HhaI | GCGC | 3 cut(s) | 452, 746, 818 |
| Hin1I | GRCGYC | 4 cut(s) | 653, 684, 714, 744 |
| Hin6I | GCGC | 3 cut(s) | 450, 744, 816 |
| HinP1I | GCGC | 3 cut(s) | 450, 744, 816 |
| HincII | GTYRAC | 1 cut(s) | 374 |
| HindII | GTYRAC | 1 cut(s) | 374 |
| HinfI | GANTC | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 2 cut(s) | 187, 374 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 406 |
| Hpy188III | TCNNGA | 2 cut(s) | 43, 134 |
| Hpy8I | GTNNAC | 2 cut(s) | 187, 374 |
| HpyAV | CCTTC | 3 cut(s) | 70, 326, 653 |
| HpyCH4IV | ACGT | 4 cut(s) | 118, 156, 301, 376 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 356, 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 824 |
| HpyF3I | CTNAG | 4 cut(s) | 216, 279, 545, 828 |
| HpySE526I | ACGT | 4 cut(s) | 118, 156, 301, 376 |
| Hsp92I | GRCGYC | 4 cut(s) | 653, 684, 714, 744 |
| HspAI | GCGC | 3 cut(s) | 450, 744, 816 |
| KasI | GGCGCC | 1 cut(s) | 743 |
| Kzo9I | GATC | 3 cut(s) | 39, 466, 508 |
| LmnI | GCTCC | 3 cut(s) | 268, 459, 474 |
| LpnPI | CCDG | 8 cut(s) | 99, 491, 571, 580, 642, 669, 807, 815 |
| MaeI | CTAG | 1 cut(s) | 201 |
| MaeII | ACGT | 4 cut(s) | 118, 156, 301, 376 |
| MaeIII | GTNAC | 4 cut(s) | 242, 416, 572, 793 |
| MalI | GATC | 3 cut(s) | 41, 468, 510 |
| MboI | GATC | 3 cut(s) | 39, 466, 508 |
| MboII | GAAGA | 3 cut(s) | 58, 394, 490 |
| MfeI | CAATTG | 1 cut(s) | 512 |
| MhlI | GDGCHC | 1 cut(s) | 829 |
| MlsI | TGGCCA | 2 cut(s) | 15, 738 |
| MluCI | AATT | 7 cut(s) | 91, 292, 361, 512, 537, 624, 757 |
| MluNI | TGGCCA | 2 cut(s) | 15, 738 |
| Mly113I | GGCGCC | 1 cut(s) | 744 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MmeI | TCCRAC | 1 cut(s) | 429 |
| MnlI | CCTC | 8 cut(s) | 322, 342, 362, 386, 412, 473, 578, 738 |
| Mox20I | TGGCCA | 2 cut(s) | 15, 738 |
| MscI | TGGCCA | 2 cut(s) | 15, 738 |
| MseI | TTAA | 1 cut(s) | 264 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 488 |
| Msp20I | TGGCCA | 2 cut(s) | 15, 738 |
| MspCI | CTTAAG | 1 cut(s) | 263 |
| MunI | CAATTG | 1 cut(s) | 512 |
| Mva1269I | GAATGC | 1 cut(s) | 115 |
| MvnI | CGCG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 824 |
| NarI | GGCGCC | 1 cut(s) | 744 |
| NcoI | CCATGG | 3 cut(s) | 717, 739, 763 |
| NdeII | GATC | 3 cut(s) | 39, 466, 508 |
| NlaIV | GGNNCC | 6 cut(s) | 148, 461, 476, 697, 745, 769 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| NspI | RCATGY | 1 cut(s) | 356 |
| PaeI | GCATGC | 1 cut(s) | 356 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PceI | AGGCCT | 1 cut(s) | 833 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 576 |
| PctI | GAATGC | 1 cut(s) | 115 |
| PkrI | GCNGC | 1 cut(s) | 665 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PluTI | GGCGCC | 1 cut(s) | 747 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| PspFI | CCCAGC | 1 cut(s) | 585 |
| PspN4I | GGNNCC | 6 cut(s) | 148, 461, 476, 697, 745, 769 |
| PspPI | GGNCC | 5 cut(s) | 308, 440, 524, 588, 620 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 488 |
| SaqAI | TTAA | 1 cut(s) | 264 |
| SatI | GCNGC | 1 cut(s) | 664 |
| Sau3AI | GATC | 3 cut(s) | 39, 466, 508 |
| Sau96I | GGNCC | 5 cut(s) | 308, 440, 524, 588, 620 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 1 cut(s) | 829 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SfoI | GGCGCC | 1 cut(s) | 745 |
| SinI | GGWCC | 2 cut(s) | 308, 440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 488 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| SphI | GCATGC | 1 cut(s) | 356 |
| Sse9I | AATT | 7 cut(s) | 91, 292, 361, 512, 537, 624, 757 |
| SseBI | AGGCCT | 1 cut(s) | 833 |
| SsiI | CCGC | 1 cut(s) | 664 |
| SspDI | GGCGCC | 1 cut(s) | 743 |
| SspMI | CTAG | 1 cut(s) | 201 |
| StuI | AGGCCT | 1 cut(s) | 833 |
| StyI | CCWWGG | 5 cut(s) | 252, 675, 717, 739, 763 |
| TaiI | ACGT | 4 cut(s) | 121, 159, 304, 379 |
| TaqI | TCGA | 3 cut(s) | 42, 465, 501 |
| TasI | AATT | 7 cut(s) | 91, 292, 361, 512, 537, 624, 757 |
| TauI | GCSGC | 1 cut(s) | 666 |
| Tru1I | TTAA | 1 cut(s) | 264 |
| Tru9I | TTAA | 1 cut(s) | 264 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 3 cut(s) | 122, 167, 215 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| Vha464I | CTTAAG | 1 cut(s) | 263 |
| VpaK11BI | GGWCC | 2 cut(s) | 308, 440 |
| XceI | RCATGY | 1 cut(s) | 356 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 778 |
| XspI | CTAG | 1 cut(s) | 201 |