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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 180 |
| Acc36I | ACCTGC | 1 cut(s) | 180 |
| AccII | CGCG | 1 cut(s) | 356 |
| AciI | CCGC | 2 cut(s) | 175, 478 |
| AclWI | GGATC | 2 cut(s) | 274, 287 |
| AcsI | RAATTY | 1 cut(s) | 545 |
| AcuI | CTGAAG | 1 cut(s) | 537 |
| AfaI | GTAC | 3 cut(s) | 344, 371, 501 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 241, 379 |
| AflII | CTTAAG | 1 cut(s) | 266 |
| AgsI | TTSAA | 1 cut(s) | 493 |
| AjiI | CACGTC | 2 cut(s) | 129, 164 |
| AluBI | AGCT | 3 cut(s) | 201, 296, 317 |
| AluI | AGCT | 3 cut(s) | 201, 296, 317 |
| AlwI | GGATC | 2 cut(s) | 274, 287 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 172 |
| Ama87I | CYCGRG | 2 cut(s) | 120, 410 |
| AoxI | GGCC | 1 cut(s) | 77 |
| ApeKI | GCWGC | 2 cut(s) | 70, 415 |
| ApoI | RAATTY | 1 cut(s) | 545 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 522 |
| AspLEI | GCGC | 4 cut(s) | 147, 227, 258, 358 |
| AspS9I | GGNCC | 2 cut(s) | 78, 244 |
| AvaI | CYCGRG | 2 cut(s) | 120, 410 |
| AvaII | GGWCC | 1 cut(s) | 244 |
| BamHI | GGATCC | 1 cut(s) | 279 |
| BbsI | GAAGAC | 1 cut(s) | 390 |
| BbvI | GCAGC | 2 cut(s) | 82, 427 |
| BccI | CCATC | 3 cut(s) | 269, 332, 459 |
| BciVI | GTATCC | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 212 |
| BfoI | RGCGCY | 1 cut(s) | 148 |
| BfrI | CTTAAG | 1 cut(s) | 266 |
| BfuAI | ACCTGC | 1 cut(s) | 180 |
| BfuI | GTATCC | 1 cut(s) | 224 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 131 |
| BisI | GCNGC | 2 cut(s) | 71, 416 |
| BlsI | GCNGC | 2 cut(s) | 72, 417 |
| Bme18I | GGWCC | 1 cut(s) | 244 |
| BmeT110I | CYCGRG | 2 cut(s) | 120, 410 |
| BmgBI | CACGTC | 2 cut(s) | 129, 164 |
| BmgT120I | GGNCC | 2 cut(s) | 78, 244 |
| BmiI | GGNNCC | 3 cut(s) | 207, 245, 281 |
| BmrI | ACTGGG | 2 cut(s) | 75, 143 |
| BmsI | GCATC | 1 cut(s) | 271 |
| BmuI | ACTGGG | 2 cut(s) | 75, 143 |
| BpiI | GAAGAC | 1 cut(s) | 390 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 190, 222 |
| BsaJI | CCNNGG | 1 cut(s) | 49 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 241, 379 |
| Bse1I | ACTGG | 3 cut(s) | 81, 138, 149 |
| BseDI | CCNNGG | 1 cut(s) | 49 |
| BseGI | GGATG | 1 cut(s) | 183 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 241, 379 |
| BseNI | ACTGG | 3 cut(s) | 81, 138, 149 |
| BseXI | GCAGC | 2 cut(s) | 82, 427 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BsgI | GTGCAG | 1 cut(s) | 89 |
| Bsh1236I | CGCG | 1 cut(s) | 356 |
| BshFI | GGCC | 1 cut(s) | 79 |
| BsiHKCI | CYCGRG | 2 cut(s) | 120, 410 |
| BslFI | GGGAC | 1 cut(s) | 229 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 241, 379 |
| BsmFI | GGGAC | 1 cut(s) | 229 |
| BsnI | GGCC | 1 cut(s) | 79 |
| BsoBI | CYCGRG | 2 cut(s) | 120, 410 |
| Bsp143I | GATC | 2 cut(s) | 41, 279 |
| BspACI | CCGC | 2 cut(s) | 175, 478 |
| BspANI | GGCC | 1 cut(s) | 79 |
| BspFNI | CGCG | 1 cut(s) | 356 |
| BspHI | TCATGA | 1 cut(s) | 333 |
| BspLI | GGNNCC | 3 cut(s) | 207, 245, 281 |
| BspMI | ACCTGC | 1 cut(s) | 180 |
| BspPI | GGATC | 2 cut(s) | 274, 287 |
| BspTI | CTTAAG | 1 cut(s) | 266 |
| BsrI | ACTGG | 3 cut(s) | 81, 138, 149 |
| BssECI | CCNNGG | 1 cut(s) | 49 |
| BssMI | GATC | 2 cut(s) | 41, 279 |
| Bst4CI | ACNGT | 1 cut(s) | 67 |
| BstAFI | CTTAAG | 1 cut(s) | 266 |
| BstC8I | GCNNGC | 2 cut(s) | 158, 260 |
| BstDEI | CTNAG | 3 cut(s) | 55, 297, 454 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 377 |
| BstF5I | GGATG | 1 cut(s) | 183 |
| BstFNI | CGCG | 1 cut(s) | 356 |
| BstH2I | RGCGCY | 1 cut(s) | 148 |
| BstHHI | GCGC | 4 cut(s) | 147, 227, 258, 358 |
| BstKTI | GATC | 2 cut(s) | 44, 282 |
| BstMBI | GATC | 2 cut(s) | 41, 279 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 76, 131, 153, 166, 314 |
| BstUI | CGCG | 1 cut(s) | 356 |
| BstV1I | GCAGC | 2 cut(s) | 82, 427 |
| BstV2I | GAAGAC | 1 cut(s) | 390 |
| BstX2I | RGATCY | 1 cut(s) | 279 |
| BstYI | RGATCY | 1 cut(s) | 279 |
| BsuI | GTATCC | 1 cut(s) | 224 |
| BsuRI | GGCC | 1 cut(s) | 79 |
| BtrI | CACGTC | 2 cut(s) | 129, 164 |
| BtsCI | GGATG | 1 cut(s) | 183 |
| BveI | ACCTGC | 1 cut(s) | 180 |
| Cac8I | GCNNGC | 2 cut(s) | 158, 260 |
| CaiI | CAGNNNCTG | 1 cut(s) | 172 |
| CciI | TCATGA | 1 cut(s) | 333 |
| CfoI | GCGC | 4 cut(s) | 147, 227, 258, 358 |
| Cfr13I | GGNCC | 2 cut(s) | 78, 244 |
| CseI | GACGC | 1 cut(s) | 362 |
| Csp6I | GTAC | 3 cut(s) | 343, 370, 500 |
| CviAII | CATG | 2 cut(s) | 334, 346 |
| CviQI | GTAC | 3 cut(s) | 343, 370, 500 |
| DdeI | CTNAG | 3 cut(s) | 55, 297, 454 |
| DpnI | GATC | 2 cut(s) | 43, 281 |
| DpnII | GATC | 2 cut(s) | 41, 279 |
| Eco47I | GGWCC | 1 cut(s) | 244 |
| Eco57I | CTGAAG | 1 cut(s) | 537 |
| Eco88I | CYCGRG | 2 cut(s) | 120, 410 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 377 |
| FaeI | CATG | 2 cut(s) | 337, 349 |
| FaiI | YATR | 6 cut(s) | 75, 335, 347, 400, 471, 539 |
| FaqI | GGGAC | 1 cut(s) | 229 |
| FatI | CATG | 2 cut(s) | 333, 345 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 416 |
| FokI | GGATG | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 416 |
| FspBI | CTAG | 1 cut(s) | 212 |
| GlaI | GCGC | 4 cut(s) | 146, 226, 257, 357 |
| GluI | GCNGC | 2 cut(s) | 71, 416 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| HaeII | RGCGCY | 1 cut(s) | 148 |
| HaeIII | GGCC | 1 cut(s) | 79 |
| HgaI | GACGC | 1 cut(s) | 362 |
| HhaI | GCGC | 4 cut(s) | 147, 227, 258, 358 |
| Hin1II | CATG | 2 cut(s) | 337, 349 |
| Hin6I | GCGC | 4 cut(s) | 145, 225, 256, 356 |
| HinP1I | GCGC | 4 cut(s) | 145, 225, 256, 356 |
| HinfI | GANTC | 1 cut(s) | 437 |
| Hpy188I | TCNGA | 1 cut(s) | 517 |
| Hpy188III | TCNNGA | 4 cut(s) | 18, 283, 334, 449 |
| Hpy99I | CGWCG | 1 cut(s) | 133 |
| HpyAV | CCTTC | 1 cut(s) | 24 |
| HpyCH4III | ACNGT | 1 cut(s) | 67 |
| HpyCH4IV | ACGT | 3 cut(s) | 128, 163, 429 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 70 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 76, 131, 153, 166, 314 |
| HpyF3I | CTNAG | 3 cut(s) | 55, 297, 454 |
| HpySE526I | ACGT | 3 cut(s) | 128, 163, 429 |
| Hsp92II | CATG | 2 cut(s) | 337, 349 |
| HspAI | GCGC | 4 cut(s) | 145, 225, 256, 356 |
| Kzo9I | GATC | 2 cut(s) | 41, 279 |
| LmnI | GCTCC | 2 cut(s) | 211, 363 |
| Lsp1109I | GCAGC | 2 cut(s) | 82, 427 |
| LweI | GCATC | 1 cut(s) | 271 |
| MaeI | CTAG | 1 cut(s) | 212 |
| MaeII | ACGT | 3 cut(s) | 128, 163, 429 |
| MaeIII | GTNAC | 1 cut(s) | 182 |
| MalI | GATC | 2 cut(s) | 43, 281 |
| MboI | GATC | 2 cut(s) | 41, 279 |
| MboII | GAAGA | 2 cut(s) | 120, 395 |
| MflI | RGATCY | 1 cut(s) | 279 |
| MluCI | AATT | 3 cut(s) | 194, 511, 545 |
| MnlI | CCTC | 6 cut(s) | 21, 59, 298, 373, 383, 485 |
| MroXI | GAANNNNTTC | 1 cut(s) | 522 |
| MseI | TTAA | 1 cut(s) | 267 |
| MslI | CAYNNNNRTG | 1 cut(s) | 332 |
| MspCI | CTTAAG | 1 cut(s) | 266 |
| MvnI | CGCG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 76, 131, 153, 166, 314 |
| NdeII | GATC | 2 cut(s) | 41, 279 |
| NlaIII | CATG | 2 cut(s) | 337, 349 |
| NlaIV | GGNNCC | 3 cut(s) | 207, 245, 281 |
| NmeAIII | GCCGAG | 1 cut(s) | 30 |
| PaeR7I | CTCGAG | 1 cut(s) | 410 |
| PagI | TCATGA | 1 cut(s) | 333 |
| PaqCI | CACCTGC | 1 cut(s) | 180 |
| PdmI | GAANNNNTTC | 1 cut(s) | 522 |
| PfeI | GAWTC | 1 cut(s) | 437 |
| PkrI | GCNGC | 2 cut(s) | 72, 417 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 3 cut(s) | 207, 245, 281 |
| PspPI | GGNCC | 2 cut(s) | 78, 244 |
| PspXI | VCTCGAGB | 1 cut(s) | 410 |
| PstNI | CAGNNNCTG | 1 cut(s) | 172 |
| PsuI | RGATCY | 1 cut(s) | 279 |
| RsaI | GTAC | 3 cut(s) | 344, 371, 501 |
| RsaNI | GTAC | 3 cut(s) | 343, 370, 500 |
| RseI | CAYNNNNRTG | 1 cut(s) | 332 |
| SaqAI | TTAA | 1 cut(s) | 267 |
| SatI | GCNGC | 2 cut(s) | 71, 416 |
| Sau3AI | GATC | 2 cut(s) | 41, 279 |
| Sau96I | GGNCC | 2 cut(s) | 78, 244 |
| SfaNI | GCATC | 1 cut(s) | 271 |
| Sfr274I | CTCGAG | 1 cut(s) | 410 |
| SinI | GGWCC | 1 cut(s) | 244 |
| SlaI | CTCGAG | 1 cut(s) | 410 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 332 |
| SmlI | CTYRAG | 2 cut(s) | 266, 410 |
| SmoI | CTYRAG | 2 cut(s) | 266, 410 |
| Sse9I | AATT | 3 cut(s) | 194, 511, 545 |
| SsiI | CCGC | 2 cut(s) | 175, 478 |
| SspMI | CTAG | 1 cut(s) | 212 |
| TaaI | ACNGT | 1 cut(s) | 67 |
| TaiI | ACGT | 3 cut(s) | 131, 166, 432 |
| TaqI | TCGA | 1 cut(s) | 411 |
| TasI | AATT | 3 cut(s) | 194, 511, 545 |
| TatI | WGTACW | 1 cut(s) | 499 |
| TfiI | GAWTC | 1 cut(s) | 437 |
| Tru1I | TTAA | 1 cut(s) | 267 |
| Tru9I | TTAA | 1 cut(s) | 267 |
| TseI | GCWGC | 2 cut(s) | 70, 415 |
| TspDTI | ATGAA | 3 cut(s) | 327, 362, 557 |
| TspGWI | ACGGA | 2 cut(s) | 236, 422 |
| Vha464I | CTTAAG | 1 cut(s) | 266 |
| VpaK11BI | GGWCC | 1 cut(s) | 244 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 377 |
| XapI | RAATTY | 1 cut(s) | 545 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 396 |
| XhoI | CTCGAG | 1 cut(s) | 410 |
| XmnI | GAANNNNTTC | 1 cut(s) | 522 |
| XspI | CTAG | 1 cut(s) | 212 |