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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 300 |
| AccB1I | GGYRCC | 1 cut(s) | 458 |
| AccII | CGCG | 1 cut(s) | 146 |
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 1 cut(s) | 268 |
| AclI | AACGTT | 1 cut(s) | 219 |
| AcoI | YGGCCR | 1 cut(s) | 343 |
| AcyI | GRCGYC | 1 cut(s) | 459 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 169, 569 |
| AflII | CTTAAG | 1 cut(s) | 16 |
| AgsI | TTSAA | 2 cut(s) | 94, 283 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 52, 84 |
| AluBI | AGCT | 5 cut(s) | 82, 107, 311, 451, 473 |
| AluI | AGCT | 5 cut(s) | 82, 107, 311, 451, 473 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 1 cut(s) | 330 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| AoxI | GGCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 1 cut(s) | 205 |
| AspLEI | GCGC | 3 cut(s) | 8, 148, 461 |
| BalI | TGGCCA | 1 cut(s) | 345 |
| BanI | GGYRCC | 1 cut(s) | 458 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BbsI | GAAGAC | 2 cut(s) | 180, 383 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 1 cut(s) | 217 |
| BccI | CCATC | 4 cut(s) | 19, 49, 249, 325 |
| BcoDI | GTCTC | 1 cut(s) | 330 |
| BfaI | CTAG | 2 cut(s) | 53, 513 |
| BfmI | CTRYAG | 1 cut(s) | 550 |
| BfoI | RGCGCY | 1 cut(s) | 462 |
| BfrI | CTTAAG | 1 cut(s) | 16 |
| BisI | GCNGC | 1 cut(s) | 206 |
| BlsI | GCNGC | 1 cut(s) | 207 |
| BmiI | GGNNCC | 1 cut(s) | 460 |
| BpiI | GAAGAC | 2 cut(s) | 180, 383 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BsaBI | GATNNNNATC | 1 cut(s) | 368 |
| BsaHI | GRCGYC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 169, 569 |
| Bse1I | ACTGG | 1 cut(s) | 518 |
| Bse8I | GATNNNNATC | 1 cut(s) | 368 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseGI | GGATG | 1 cut(s) | 41 |
| BseJI | GATNNNNATC | 1 cut(s) | 368 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 169, 569 |
| BseNI | ACTGG | 1 cut(s) | 518 |
| BseXI | GCAGC | 1 cut(s) | 217 |
| Bsh1236I | CGCG | 1 cut(s) | 146 |
| BshFI | GGCC | 1 cut(s) | 345 |
| BshNI | GGYRCC | 1 cut(s) | 458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 169, 569 |
| BsmAI | GTCTC | 1 cut(s) | 330 |
| BsnI | GGCC | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 1 cut(s) | 369 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspACI | CCGC | 1 cut(s) | 268 |
| BspANI | GGCC | 1 cut(s) | 345 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspFNI | CGCG | 1 cut(s) | 146 |
| BspHI | TCATGA | 2 cut(s) | 123, 445 |
| BspLI | GGNNCC | 1 cut(s) | 460 |
| BspT107I | GGYRCC | 1 cut(s) | 458 |
| BspTI | CTTAAG | 1 cut(s) | 16 |
| BsrI | ACTGG | 1 cut(s) | 518 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 1 cut(s) | 369 |
| BssNI | GRCGYC | 1 cut(s) | 459 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| BstACI | GRCGYC | 1 cut(s) | 459 |
| BstAFI | CTTAAG | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstDEI | CTNAG | 1 cut(s) | 528 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 167 |
| BstF5I | GGATG | 1 cut(s) | 41 |
| BstFNI | CGCG | 1 cut(s) | 146 |
| BstH2I | RGCGCY | 1 cut(s) | 462 |
| BstHHI | GCGC | 3 cut(s) | 8, 148, 461 |
| BstKTI | GATC | 1 cut(s) | 372 |
| BstMAI | GTCTC | 1 cut(s) | 330 |
| BstMBI | GATC | 1 cut(s) | 369 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 94 |
| BstNSI | RCATGY | 1 cut(s) | 66 |
| BstSFI | CTRYAG | 1 cut(s) | 550 |
| BstUI | CGCG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 1 cut(s) | 217 |
| BstV2I | GAAGAC | 2 cut(s) | 180, 383 |
| BsuRI | GGCC | 1 cut(s) | 345 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtgZI | GCGATG | 1 cut(s) | 268 |
| BtsCI | GGATG | 1 cut(s) | 41 |
| BtsIMutI | CAGTG | 1 cut(s) | 525 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| CciI | TCATGA | 2 cut(s) | 123, 445 |
| CfoI | GCGC | 3 cut(s) | 8, 148, 461 |
| CseI | GACGC | 1 cut(s) | 152 |
| CviAII | CATG | 6 cut(s) | 63, 124, 136, 189, 446, 463 |
| DdeI | CTNAG | 1 cut(s) | 528 |
| DinI | GGCGCC | 1 cut(s) | 460 |
| DpnI | GATC | 1 cut(s) | 371 |
| DpnII | GATC | 1 cut(s) | 369 |
| EaeI | YGGCCR | 1 cut(s) | 343 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| EgeI | GGCGCC | 1 cut(s) | 460 |
| EheI | GGCGCC | 1 cut(s) | 460 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaeI | CATG | 6 cut(s) | 66, 127, 139, 192, 449, 466 |
| FatI | CATG | 6 cut(s) | 62, 123, 135, 188, 445, 462 |
| Fnu4HI | GCNGC | 1 cut(s) | 206 |
| FokI | GGATG | 1 cut(s) | 28 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| Fsp4HI | GCNGC | 1 cut(s) | 206 |
| FspBI | CTAG | 2 cut(s) | 53, 513 |
| GlaI | GCGC | 3 cut(s) | 7, 147, 460 |
| GluI | GCNGC | 1 cut(s) | 206 |
| HaeII | RGCGCY | 1 cut(s) | 462 |
| HaeIII | GGCC | 1 cut(s) | 345 |
| HapII | CCGG | 1 cut(s) | 539 |
| HgaI | GACGC | 1 cut(s) | 152 |
| HhaI | GCGC | 3 cut(s) | 8, 148, 461 |
| Hin1I | GRCGYC | 1 cut(s) | 459 |
| Hin1II | CATG | 6 cut(s) | 66, 127, 139, 192, 449, 466 |
| Hin6I | GCGC | 3 cut(s) | 6, 146, 459 |
| HinP1I | GCGC | 3 cut(s) | 6, 146, 459 |
| HinfI | GANTC | 2 cut(s) | 227, 379 |
| HpaII | CCGG | 1 cut(s) | 539 |
| Hpy166II | GTNNAC | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 4 cut(s) | 59, 307, 330, 411 |
| Hpy188III | TCNNGA | 8 cut(s) | 34, 124, 224, 239, 373, 400, 446, 539 |
| Hpy8I | GTNNAC | 1 cut(s) | 499 |
| HpyCH4IV | ACGT | 3 cut(s) | 219, 430, 468 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 94 |
| HpyF3I | CTNAG | 1 cut(s) | 528 |
| HpySE526I | ACGT | 3 cut(s) | 219, 430, 468 |
| Hsp92I | GRCGYC | 1 cut(s) | 459 |
| Hsp92II | CATG | 6 cut(s) | 66, 127, 139, 192, 449, 466 |
| HspAI | GCGC | 3 cut(s) | 6, 146, 459 |
| KasI | GGCGCC | 1 cut(s) | 458 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| Kzo9I | GATC | 1 cut(s) | 369 |
| LmnI | GCTCC | 2 cut(s) | 153, 563 |
| LpnPI | CCDG | 5 cut(s) | 19, 245, 252, 531, 552 |
| Lsp1109I | GCAGC | 1 cut(s) | 217 |
| MaeI | CTAG | 2 cut(s) | 53, 513 |
| MaeII | ACGT | 3 cut(s) | 219, 430, 468 |
| MaeIII | GTNAC | 1 cut(s) | 224 |
| MalI | GATC | 1 cut(s) | 371 |
| MboI | GATC | 1 cut(s) | 369 |
| MboII | GAAGA | 2 cut(s) | 185, 388 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MlsI | TGGCCA | 1 cut(s) | 345 |
| MluCI | AATT | 2 cut(s) | 117, 403 |
| MluNI | TGGCCA | 1 cut(s) | 345 |
| Mly113I | GGCGCC | 1 cut(s) | 459 |
| MlyI | GAGTC | 2 cut(s) | 221, 373 |
| MnlI | CCTC | 4 cut(s) | 163, 173, 275, 563 |
| Mox20I | TGGCCA | 1 cut(s) | 345 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MscI | TGGCCA | 1 cut(s) | 345 |
| MseI | TTAA | 2 cut(s) | 17, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 138 |
| Msp20I | TGGCCA | 1 cut(s) | 345 |
| MspCI | CTTAAG | 1 cut(s) | 16 |
| MspI | CCGG | 1 cut(s) | 539 |
| MvnI | CGCG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 94 |
| NarI | GGCGCC | 1 cut(s) | 459 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeII | GATC | 1 cut(s) | 369 |
| NlaIII | CATG | 6 cut(s) | 66, 127, 139, 192, 449, 466 |
| NlaIV | GGNNCC | 1 cut(s) | 460 |
| NmuCI | GTSAC | 1 cut(s) | 224 |
| NspI | RCATGY | 1 cut(s) | 66 |
| PagI | TCATGA | 2 cut(s) | 123, 445 |
| PkrI | GCNGC | 1 cut(s) | 207 |
| PleI | GAGTC | 2 cut(s) | 221, 373 |
| PluTI | GGCGCC | 1 cut(s) | 462 |
| PpsI | GAGTC | 2 cut(s) | 221, 373 |
| PsiI | TTATAA | 1 cut(s) | 300 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp1406I | AACGTT | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 1 cut(s) | 460 |
| RseI | CAYNNNNRTG | 1 cut(s) | 138 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SaqAI | TTAA | 2 cut(s) | 17, 546 |
| SatI | GCNGC | 1 cut(s) | 206 |
| Sau3AI | GATC | 1 cut(s) | 369 |
| SchI | GAGTC | 2 cut(s) | 221, 373 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SfcI | CTRYAG | 1 cut(s) | 550 |
| SfoI | GGCGCC | 1 cut(s) | 460 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 138 |
| SmlI | CTYRAG | 2 cut(s) | 16, 200 |
| SmoI | CTYRAG | 2 cut(s) | 16, 200 |
| Sse9I | AATT | 2 cut(s) | 117, 403 |
| SsiI | CCGC | 1 cut(s) | 268 |
| SspDI | GGCGCC | 1 cut(s) | 458 |
| SspI | AATATT | 1 cut(s) | 490 |
| SspMI | CTAG | 2 cut(s) | 53, 513 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaiI | ACGT | 3 cut(s) | 222, 433, 471 |
| TaqI | TCGA | 1 cut(s) | 372 |
| TasI | AATT | 2 cut(s) | 117, 403 |
| Tru1I | TTAA | 2 cut(s) | 17, 546 |
| Tru9I | TTAA | 2 cut(s) | 17, 546 |
| TscAI | CASTG | 1 cut(s) | 525 |
| TseFI | GTSAC | 1 cut(s) | 224 |
| TseI | GCWGC | 1 cut(s) | 205 |
| Tsp45I | GTSAC | 1 cut(s) | 224 |
| TspDTI | ATGAA | 4 cut(s) | 152, 171, 434, 479 |
| TspRI | CASTG | 1 cut(s) | 525 |
| Vha464I | CTTAAG | 1 cut(s) | 16 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 167 |
| XceI | RCATGY | 1 cut(s) | 66 |
| XspI | CTAG | 2 cut(s) | 53, 513 |