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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 861 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 77, 1197 |
| Acc36I | ACCTGC | 1 cut(s) | 101 |
| AccB1I | GGYRCC | 1 cut(s) | 1351 |
| AccII | CGCG | 3 cut(s) | 247, 341, 1341 |
| AccIII | TCCGGA | 2 cut(s) | 595, 1117 |
| AciI | CCGC | 5 cut(s) | 33, 41, 245, 265, 829 |
| AclI | AACGTT | 1 cut(s) | 780 |
| AclWI | GGATC | 1 cut(s) | 1419 |
| AcoI | YGGCCR | 3 cut(s) | 192, 262, 904 |
| AcsI | RAATTY | 3 cut(s) | 387, 421, 591 |
| AcuI | CTGAAG | 2 cut(s) | 42, 1392 |
| AcyI | GRCGYC | 2 cut(s) | 286, 1352 |
| AfaI | GTAC | 1 cut(s) | 274 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 213, 330, 553, 730, 1148, 1219, 1320 |
| AflII | CTTAAG | 1 cut(s) | 578 |
| AflIII | ACRYGT | 2 cut(s) | 1267, 1435 |
| AgsI | TTSAA | 5 cut(s) | 403, 511, 656, 844, 978 |
| AjiI | CACGTC | 2 cut(s) | 79, 100 |
| AjnI | CCWGG | 1 cut(s) | 613 |
| AluBI | AGCT | 8 cut(s) | 354, 361, 644, 668, 748, 872, 1030, 1052 |
| AluI | AGCT | 8 cut(s) | 354, 361, 644, 668, 748, 872, 1030, 1052 |
| Alw21I | GWGCWC | 3 cut(s) | 630, 1032, 1249 |
| Alw26I | GTCTC | 4 cut(s) | 307, 521, 891, 964 |
| Alw44I | GTGCAC | 1 cut(s) | 1245 |
| AlwI | GGATC | 1 cut(s) | 1419 |
| Aor13HI | TCCGGA | 2 cut(s) | 595, 1117 |
| AoxI | GGCC | 5 cut(s) | 9, 169, 192, 262, 904 |
| ApaLI | GTGCAC | 1 cut(s) | 1245 |
| ApeKI | GCWGC | 1 cut(s) | 766 |
| ApoI | RAATTY | 3 cut(s) | 387, 421, 591 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 873 |
| AspLEI | GCGC | 7 cut(s) | 86, 249, 343, 570, 1341, 1343, 1354 |
| AspS9I | GGNCC | 4 cut(s) | 10, 90, 556, 1199 |
| AvaII | GGWCC | 3 cut(s) | 90, 556, 1199 |
| AxyI | CCTNAGG | 1 cut(s) | 1170 |
| BaeGI | GKGCMC | 1 cut(s) | 1249 |
| BalI | TGGCCA | 1 cut(s) | 906 |
| BanI | GGYRCC | 1 cut(s) | 1351 |
| BanII | GRGCYC | 1 cut(s) | 1032 |
| BbsI | GAAGAC | 2 cut(s) | 741, 944 |
| Bbv12I | GWGCWC | 3 cut(s) | 630, 1032, 1249 |
| BbvI | GCAGC | 1 cut(s) | 778 |
| BccI | CCATC | 5 cut(s) | 307, 581, 611, 810, 886 |
| BciT130I | CCWGG | 1 cut(s) | 615 |
| BciVI | GTATCC | 1 cut(s) | 536 |
| BcoDI | GTCTC | 4 cut(s) | 307, 521, 891, 964 |
| BfaI | CTAG | 2 cut(s) | 560, 1092 |
| BfmI | CTRYAG | 3 cut(s) | 234, 268, 1129 |
| BfoI | RGCGCY | 1 cut(s) | 1355 |
| BfrI | CTTAAG | 1 cut(s) | 578 |
| BfuAI | ACCTGC | 1 cut(s) | 101 |
| BfuI | GTATCC | 1 cut(s) | 536 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1349 |
| BglII | AGATCT | 1 cut(s) | 50 |
| BisI | GCNGC | 4 cut(s) | 33, 41, 265, 767 |
| BlsI | GCNGC | 4 cut(s) | 34, 42, 266, 768 |
| BmcAI | AGTACT | 1 cut(s) | 274 |
| Bme1390I | CCNGG | 1 cut(s) | 615 |
| Bme18I | GGWCC | 3 cut(s) | 90, 556, 1199 |
| BmgBI | CACGTC | 2 cut(s) | 79, 100 |
| BmgT120I | GGNCC | 4 cut(s) | 10, 90, 556, 1199 |
| BmiI | GGNNCC | 5 cut(s) | 557, 1253, 1353, 1368, 1379 |
| BmrFI | CCNGG | 1 cut(s) | 615 |
| BmrI | ACTGGG | 1 cut(s) | 103 |
| BmuI | ACTGGG | 1 cut(s) | 103 |
| BoxI | GACNNNNGTC | 1 cut(s) | 533 |
| BpiI | GAAGAC | 2 cut(s) | 741, 944 |
| BpmI | CTGGAG | 1 cut(s) | 545 |
| BpuEI | CTTGAG | 1 cut(s) | 782 |
| BsaBI | GATNNNNATC | 2 cut(s) | 929, 1410 |
| BsaHI | GRCGYC | 2 cut(s) | 286, 1352 |
| BsaI | GGTCTC | 1 cut(s) | 307 |
| BsaJI | CCNNGG | 2 cut(s) | 1098, 1300 |
| BsaWI | WCCGGW | 4 cut(s) | 131, 225, 595, 1117 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 226, 256 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 213, 330, 553, 730, 1148, 1219, 1320 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 2 cut(s) | 109, 528 |
| Bse21I | CCTNAGG | 1 cut(s) | 1170 |
| Bse8I | GATNNNNATC | 2 cut(s) | 929, 1410 |
| BseAI | TCCGGA | 2 cut(s) | 595, 1117 |
| BseBI | CCWGG | 1 cut(s) | 615 |
| BseDI | CCNNGG | 2 cut(s) | 1098, 1300 |
| BseGI | GGATG | 2 cut(s) | 495, 603 |
| BseJI | GATNNNNATC | 2 cut(s) | 929, 1410 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 213, 330, 553, 730, 1148, 1219, 1320 |
| BseMII | CTCAG | 1 cut(s) | 430 |
| BseNI | ACTGG | 2 cut(s) | 109, 528 |
| BsePI | GCGCGC | 1 cut(s) | 1339 |
| BseRI | GAGGAG | 1 cut(s) | 1255 |
| BseSI | GKGCMC | 1 cut(s) | 1249 |
| BseX3I | CGGCCG | 1 cut(s) | 262 |
| BseXI | GCAGC | 1 cut(s) | 778 |
| BseYI | CCCAGC | 1 cut(s) | 12 |
| BsgI | GTGCAG | 1 cut(s) | 948 |
| Bsh1236I | CGCG | 3 cut(s) | 247, 341, 1341 |
| Bsh1285I | CGRYCG | 2 cut(s) | 230, 265 |
| BshFI | GGCC | 5 cut(s) | 11, 171, 194, 264, 906 |
| BshNI | GGYRCC | 1 cut(s) | 1351 |
| BsiEI | CGRYCG | 2 cut(s) | 230, 265 |
| BsiHKAI | GWGCWC | 3 cut(s) | 630, 1032, 1249 |
| BsiSI | CCGG | 9 cut(s) | 132, 142, 191, 214, 226, 261, 280, 596, 1118 |
| BslFI | GGGAC | 1 cut(s) | 1193 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 213, 330, 553, 730, 1148, 1219, 1320 |
| BsmAI | GTCTC | 4 cut(s) | 307, 521, 891, 964 |
| BsmBI | CGTCTC | 1 cut(s) | 964 |
| BsmFI | GGGAC | 1 cut(s) | 1193 |
| BsnI | GGCC | 5 cut(s) | 11, 171, 194, 264, 906 |
| Bso31I | GGTCTC | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 3 cut(s) | 630, 1032, 1249 |
| Bsp13I | TCCGGA | 2 cut(s) | 595, 1117 |
| Bsp143I | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| Bsp19I | CCATGG | 1 cut(s) | 1300 |
| BspACI | CCGC | 5 cut(s) | 33, 41, 245, 265, 829 |
| BspANI | GGCC | 5 cut(s) | 11, 171, 194, 264, 906 |
| BspCNI | CTCAG | 1 cut(s) | 429 |
| BspEI | TCCGGA | 2 cut(s) | 595, 1117 |
| BspFNI | CGCG | 3 cut(s) | 247, 341, 1341 |
| BspHI | TCATGA | 2 cut(s) | 684, 1024 |
| BspLI | GGNNCC | 5 cut(s) | 557, 1253, 1353, 1368, 1379 |
| BspMI | ACCTGC | 1 cut(s) | 101 |
| BspPI | GGATC | 1 cut(s) | 1419 |
| BspT107I | GGYRCC | 1 cut(s) | 1351 |
| BspTI | CTTAAG | 1 cut(s) | 578 |
| BspTNI | GGTCTC | 1 cut(s) | 307 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 2 cut(s) | 109, 528 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 2 cut(s) | 1098, 1300 |
| BssHII | GCGCGC | 1 cut(s) | 1339 |
| BssMI | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| BssNI | GRCGYC | 2 cut(s) | 286, 1352 |
| BssT1I | CCWWGG | 1 cut(s) | 1300 |
| Bst2UI | CCWGG | 1 cut(s) | 615 |
| Bst4CI | ACNGT | 5 cut(s) | 238, 272, 330, 535, 1256 |
| Bst6I | CTCTTC | 1 cut(s) | 1268 |
| BstACI | GRCGYC | 2 cut(s) | 286, 1352 |
| BstAFI | CTTAAG | 1 cut(s) | 578 |
| BstC8I | GCNNGC | 2 cut(s) | 642, 1341 |
| BstDEI | CTNAG | 4 cut(s) | 380, 416, 1107, 1170 |
| BstDSI | CCRYGG | 2 cut(s) | 1098, 1300 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 728 |
| BstF5I | GGATG | 2 cut(s) | 495, 603 |
| BstFNI | CGCG | 3 cut(s) | 247, 341, 1341 |
| BstH2I | RGCGCY | 1 cut(s) | 1355 |
| BstHHI | GCGC | 7 cut(s) | 86, 249, 343, 570, 1341, 1343, 1354 |
| BstKTI | GATC | 4 cut(s) | 53, 933, 1361, 1414 |
| BstMAI | GTCTC | 4 cut(s) | 307, 521, 891, 964 |
| BstMBI | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| BstMCI | CGRYCG | 2 cut(s) | 230, 265 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 32, 62, 81, 102, 450, 656, 665, 1349 |
| BstNI | CCWGG | 1 cut(s) | 615 |
| BstNSI | RCATGY | 2 cut(s) | 709, 1439 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 533 |
| BstSCI | CCNGG | 1 cut(s) | 613 |
| BstSFI | CTRYAG | 3 cut(s) | 234, 268, 1129 |
| BstSLI | GKGCMC | 1 cut(s) | 1249 |
| BstUI | CGCG | 3 cut(s) | 247, 341, 1341 |
| BstV1I | GCAGC | 1 cut(s) | 778 |
| BstV2I | GAAGAC | 2 cut(s) | 741, 944 |
| BstX2I | RGATCY | 1 cut(s) | 50 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 614 |
| BstYI | RGATCY | 1 cut(s) | 50 |
| BstZI | CGGCCG | 1 cut(s) | 262 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1170 |
| BsuI | GTATCC | 1 cut(s) | 536 |
| BsuRI | GGCC | 5 cut(s) | 11, 171, 194, 264, 906 |
| BtgI | CCRYGG | 2 cut(s) | 1098, 1300 |
| BtgZI | GCGATG | 1 cut(s) | 829 |
| BtrI | CACGTC | 2 cut(s) | 79, 100 |
| BtsCI | GGATG | 2 cut(s) | 495, 603 |
| BtsIMutI | CAGTG | 2 cut(s) | 521, 965 |
| BveI | ACCTGC | 1 cut(s) | 101 |
| Cac8I | GCNNGC | 2 cut(s) | 642, 1341 |
| CciI | TCATGA | 2 cut(s) | 684, 1024 |
| CfoI | GCGC | 7 cut(s) | 86, 249, 343, 570, 1341, 1343, 1354 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 4 cut(s) | 10, 90, 556, 1199 |
| CseI | GACGC | 2 cut(s) | 54, 294 |
| Csp6I | GTAC | 1 cut(s) | 273 |
| CviAII | CATG | 7 cut(s) | 685, 697, 706, 1025, 1042, 1301, 1436 |
| CviQI | GTAC | 1 cut(s) | 273 |
| DdeI | CTNAG | 4 cut(s) | 380, 416, 1107, 1170 |
| DinI | GGCGCC | 1 cut(s) | 1353 |
| DpnI | GATC | 4 cut(s) | 52, 932, 1360, 1413 |
| DpnII | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 77, 1197 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 77, 1197 |
| EaeI | YGGCCR | 3 cut(s) | 192, 262, 904 |
| EagI | CGGCCG | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 1268 |
| EarI | CTCTTC | 1 cut(s) | 1268 |
| Ecl136II | GAGCTC | 1 cut(s) | 1030 |
| EclXI | CGGCCG | 1 cut(s) | 262 |
| Eco130I | CCWWGG | 1 cut(s) | 1300 |
| Eco24I | GRGCYC | 1 cut(s) | 1032 |
| Eco31I | GGTCTC | 1 cut(s) | 307 |
| Eco47I | GGWCC | 3 cut(s) | 90, 556, 1199 |
| Eco52I | CGGCCG | 1 cut(s) | 262 |
| Eco53kI | GAGCTC | 1 cut(s) | 1030 |
| Eco57I | CTGAAG | 2 cut(s) | 42, 1392 |
| Eco81I | CCTNAGG | 1 cut(s) | 1170 |
| EcoICRI | GAGCTC | 1 cut(s) | 1030 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 728 |
| EcoO109I | RGGNCCY | 1 cut(s) | 556 |
| EcoRI | GAATTC | 1 cut(s) | 591 |
| EcoRII | CCWGG | 1 cut(s) | 613 |
| EcoT14I | CCWWGG | 1 cut(s) | 1300 |
| EcoT38I | GRGCYC | 1 cut(s) | 1032 |
| EgeI | GGCGCC | 1 cut(s) | 1353 |
| EheI | GGCGCC | 1 cut(s) | 1353 |
| ErhI | CCWWGG | 1 cut(s) | 1300 |
| Esp3I | CGTCTC | 1 cut(s) | 964 |
| FaeI | CATG | 7 cut(s) | 688, 700, 709, 1028, 1045, 1304, 1439 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 497, 529 |
| FaqI | GGGAC | 1 cut(s) | 1193 |
| FatI | CATG | 7 cut(s) | 684, 696, 705, 1024, 1041, 1300, 1435 |
| FauNDI | CATATG | 1 cut(s) | 1204 |
| Fnu4HI | GCNGC | 4 cut(s) | 33, 41, 265, 767 |
| FokI | GGATG | 2 cut(s) | 502, 590 |
| FriOI | GRGCYC | 1 cut(s) | 1032 |
| Fsp4HI | GCNGC | 4 cut(s) | 33, 41, 265, 767 |
| FspBI | CTAG | 2 cut(s) | 560, 1092 |
| GlaI | GCGC | 7 cut(s) | 85, 248, 342, 569, 1340, 1342, 1353 |
| GluI | GCNGC | 4 cut(s) | 33, 41, 265, 767 |
| GsaI | CCCAGC | 1 cut(s) | 16 |
| GsuI | CTGGAG | 1 cut(s) | 545 |
| HaeII | RGCGCY | 1 cut(s) | 1355 |
| HaeIII | GGCC | 5 cut(s) | 11, 171, 194, 264, 906 |
| HapII | CCGG | 9 cut(s) | 132, 142, 191, 214, 226, 261, 280, 596, 1118 |
| HgaI | GACGC | 2 cut(s) | 54, 294 |
| HhaI | GCGC | 7 cut(s) | 86, 249, 343, 570, 1341, 1343, 1354 |
| Hin1I | GRCGYC | 2 cut(s) | 286, 1352 |
| Hin1II | CATG | 7 cut(s) | 688, 700, 709, 1028, 1045, 1304, 1439 |
| Hin6I | GCGC | 7 cut(s) | 84, 247, 341, 568, 1339, 1341, 1352 |
| HinP1I | GCGC | 7 cut(s) | 84, 247, 341, 568, 1339, 1341, 1352 |
| HincII | GTYRAC | 4 cut(s) | 125, 137, 147, 1265 |
| HindII | GTYRAC | 4 cut(s) | 125, 137, 147, 1265 |
| HindIII | AAGCTT | 2 cut(s) | 352, 870 |
| HinfI | GANTC | 3 cut(s) | 788, 940, 1121 |
| HpaII | CCGG | 9 cut(s) | 132, 142, 191, 214, 226, 261, 280, 596, 1118 |
| Hpy166II | GTNNAC | 6 cut(s) | 125, 137, 147, 1000, 1247, 1265 |
| Hpy188III | TCNNGA | 9 cut(s) | 400, 487, 596, 685, 785, 800, 934, 1025, 1118 |
| Hpy8I | GTNNAC | 6 cut(s) | 125, 137, 147, 1000, 1247, 1265 |
| Hpy99I | CGWCG | 2 cut(s) | 184, 288 |
| HpyAV | CCTTC | 3 cut(s) | 961, 1217, 1367 |
| HpyCH4III | ACNGT | 5 cut(s) | 238, 272, 330, 535, 1256 |
| HpyCH4IV | ACGT | 7 cut(s) | 78, 99, 624, 780, 1009, 1047, 1267 |
| HpyCH4V | TGCA | 2 cut(s) | 965, 1247 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 32, 62, 81, 102, 450, 656, 665, 1349 |
| HpyF3I | CTNAG | 4 cut(s) | 380, 416, 1107, 1170 |
| HpySE526I | ACGT | 7 cut(s) | 78, 99, 624, 780, 1009, 1047, 1267 |
| Hsp92I | GRCGYC | 2 cut(s) | 286, 1352 |
| Hsp92II | CATG | 7 cut(s) | 688, 700, 709, 1028, 1045, 1304, 1439 |
| HspAI | GCGC | 7 cut(s) | 84, 247, 341, 568, 1339, 1341, 1352 |
| KasI | GGCGCC | 1 cut(s) | 1351 |
| Kpn2I | TCCGGA | 2 cut(s) | 595, 1117 |
| Kzo9I | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| LmnI | GCTCC | 6 cut(s) | 358, 458, 714, 1159, 1366, 1377 |
| Lsp1109I | GCAGC | 1 cut(s) | 778 |
| MaeI | CTAG | 2 cut(s) | 560, 1092 |
| MaeII | ACGT | 7 cut(s) | 78, 99, 624, 780, 1009, 1047, 1267 |
| MaeIII | GTNAC | 5 cut(s) | 238, 494, 785, 1133, 1307 |
| MalI | GATC | 4 cut(s) | 52, 932, 1360, 1413 |
| MboI | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| MboII | GAAGA | 4 cut(s) | 746, 949, 1090, 1285 |
| MflI | RGATCY | 1 cut(s) | 50 |
| MhlI | GDGCHC | 3 cut(s) | 630, 1032, 1249 |
| MlsI | TGGCCA | 1 cut(s) | 906 |
| MluCI | AATT | 7 cut(s) | 387, 394, 421, 591, 678, 982, 1183 |
| MluNI | TGGCCA | 1 cut(s) | 906 |
| Mly113I | GGCGCC | 1 cut(s) | 1352 |
| MlyI | GAGTC | 3 cut(s) | 782, 934, 1130 |
| MmeI | TCCRAC | 4 cut(s) | 203, 319, 520, 1320 |
| Mox20I | TGGCCA | 1 cut(s) | 906 |
| MroI | TCCGGA | 2 cut(s) | 595, 1117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 873 |
| MscI | TGGCCA | 1 cut(s) | 906 |
| MseI | TTAA | 3 cut(s) | 306, 425, 579 |
| MslI | CAYNNNNRTG | 2 cut(s) | 699, 1391 |
| Msp20I | TGGCCA | 1 cut(s) | 906 |
| MspCI | CTTAAG | 1 cut(s) | 578 |
| MspI | CCGG | 9 cut(s) | 132, 142, 191, 214, 226, 261, 280, 596, 1118 |
| MspR9I | CCNGG | 1 cut(s) | 615 |
| MvaI | CCWGG | 1 cut(s) | 615 |
| MvnI | CGCG | 3 cut(s) | 247, 341, 1341 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 32, 62, 81, 102, 450, 656, 665, 1349 |
| NarI | GGCGCC | 1 cut(s) | 1352 |
| NcoI | CCATGG | 1 cut(s) | 1300 |
| NdeI | CATATG | 1 cut(s) | 1204 |
| NdeII | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| NlaIII | CATG | 7 cut(s) | 688, 700, 709, 1028, 1045, 1304, 1439 |
| NlaIV | GGNNCC | 5 cut(s) | 557, 1253, 1353, 1368, 1379 |
| NmuCI | GTSAC | 2 cut(s) | 785, 1133 |
| NspI | RCATGY | 2 cut(s) | 709, 1439 |
| PagI | TCATGA | 2 cut(s) | 684, 1024 |
| PauI | GCGCGC | 1 cut(s) | 1339 |
| PciI | ACATGT | 1 cut(s) | 1435 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 292, 1095 |
| PdmI | GAANNNNTTC | 1 cut(s) | 873 |
| PkrI | GCNGC | 4 cut(s) | 34, 42, 266, 768 |
| PleI | GAGTC | 3 cut(s) | 782, 934, 1129 |
| PluTI | GGCGCC | 1 cut(s) | 1355 |
| PpsI | GAGTC | 3 cut(s) | 782, 934, 1129 |
| PpuMI | RGGWCCY | 1 cut(s) | 556 |
| PscI | ACATGT | 1 cut(s) | 1435 |
| PshAI | GACNNNNGTC | 1 cut(s) | 533 |
| PsiI | TTATAA | 1 cut(s) | 861 |
| Psp124BI | GAGCTC | 1 cut(s) | 1032 |
| Psp1406I | AACGTT | 1 cut(s) | 780 |
| Psp5II | RGGWCCY | 1 cut(s) | 556 |
| Psp6I | CCWGG | 1 cut(s) | 613 |
| PspFI | CCCAGC | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 613 |
| PspN4I | GGNNCC | 5 cut(s) | 557, 1253, 1353, 1368, 1379 |
| PspPI | GGNCC | 4 cut(s) | 10, 90, 556, 1199 |
| PspPPI | RGGWCCY | 1 cut(s) | 556 |
| PsuI | RGATCY | 1 cut(s) | 50 |
| PteI | GCGCGC | 1 cut(s) | 1339 |
| RsaI | GTAC | 1 cut(s) | 274 |
| RsaNI | GTAC | 1 cut(s) | 273 |
| RseI | CAYNNNNRTG | 2 cut(s) | 699, 1391 |
| SacI | GAGCTC | 1 cut(s) | 1032 |
| SaqAI | TTAA | 3 cut(s) | 306, 425, 579 |
| SatI | GCNGC | 4 cut(s) | 33, 41, 265, 767 |
| Sau3AI | GATC | 4 cut(s) | 50, 930, 1358, 1411 |
| Sau96I | GGNCC | 4 cut(s) | 10, 90, 556, 1199 |
| ScaI | AGTACT | 1 cut(s) | 274 |
| SchI | GAGTC | 3 cut(s) | 782, 934, 1130 |
| ScrFI | CCNGG | 1 cut(s) | 615 |
| SduI | GDGCHC | 3 cut(s) | 630, 1032, 1249 |
| SfcI | CTRYAG | 3 cut(s) | 234, 268, 1129 |
| SfoI | GGCGCC | 1 cut(s) | 1353 |
| SinI | GGWCC | 3 cut(s) | 90, 556, 1199 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 699, 1391 |
| SmlI | CTYRAG | 2 cut(s) | 578, 761 |
| SmoI | CTYRAG | 2 cut(s) | 578, 761 |
| Sse9I | AATT | 7 cut(s) | 387, 394, 421, 591, 678, 982, 1183 |
| SsiI | CCGC | 5 cut(s) | 33, 41, 245, 265, 829 |
| SspDI | GGCGCC | 1 cut(s) | 1351 |
| SspI | AATATT | 1 cut(s) | 1069 |
| SspMI | CTAG | 2 cut(s) | 560, 1092 |
| SstI | GAGCTC | 1 cut(s) | 1032 |
| StyD4I | CCNGG | 1 cut(s) | 613 |
| StyI | CCWWGG | 1 cut(s) | 1300 |
| TaaI | ACNGT | 5 cut(s) | 238, 272, 330, 535, 1256 |
| TaiI | ACGT | 7 cut(s) | 81, 102, 627, 783, 1012, 1050, 1270 |
| TaqI | TCGA | 3 cut(s) | 933, 1357, 1404 |
| TasI | AATT | 7 cut(s) | 387, 394, 421, 591, 678, 982, 1183 |
| TatI | WGTACW | 1 cut(s) | 272 |
| TauI | GCSGC | 3 cut(s) | 35, 43, 267 |
| Tru1I | TTAA | 3 cut(s) | 306, 425, 579 |
| Tru9I | TTAA | 3 cut(s) | 306, 425, 579 |
| TscAI | CASTG | 2 cut(s) | 528, 972 |
| TseFI | GTSAC | 2 cut(s) | 785, 1133 |
| TseI | GCWGC | 1 cut(s) | 766 |
| Tsp45I | GTSAC | 2 cut(s) | 785, 1133 |
| TspDTI | ATGAA | 4 cut(s) | 713, 732, 1013, 1058 |
| TspGWI | ACGGA | 2 cut(s) | 103, 1264 |
| TspRI | CASTG | 2 cut(s) | 528, 972 |
| Vha464I | CTTAAG | 1 cut(s) | 578 |
| VneI | GTGCAC | 1 cut(s) | 1245 |
| VpaK11BI | GGWCC | 3 cut(s) | 90, 556, 1199 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 728 |
| XapI | RAATTY | 3 cut(s) | 387, 421, 591 |
| XceI | RCATGY | 2 cut(s) | 709, 1439 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 747 |
| XmnI | GAANNNNTTC | 1 cut(s) | 873 |
| XspI | CTAG | 2 cut(s) | 560, 1092 |
| ZrmI | AGTACT | 1 cut(s) | 274 |