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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AciI | CCGC | 1 cut(s) | 763 |
| AclWI | GGATC | 2 cut(s) | 551, 577 |
| AcsI | RAATTY | 2 cut(s) | 416, 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 5 cut(s) | 376, 410, 577, 587, 677 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 562 |
| AluI | AGCT | 3 cut(s) | 155, 161, 562 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 292, 619 |
| AlwI | GGATC | 2 cut(s) | 551, 577 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 2 cut(s) | 416, 428 |
| AseI | ATTAAT | 1 cut(s) | 500 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 1 cut(s) | 687 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 497, 717 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 341, 375, 674, 708 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BcoDI | GTCTC | 2 cut(s) | 292, 619 |
| BfaI | CTAG | 3 cut(s) | 51, 338, 708 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 1 cut(s) | 686 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 104, 141 |
| BsaI | GGTCTC | 2 cut(s) | 292, 619 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 1 cut(s) | 728 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 687 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BslFI | GGGAC | 1 cut(s) | 725 |
| BsmAI | GTCTC | 2 cut(s) | 292, 619 |
| BsmFI | GGGAC | 1 cut(s) | 725 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 2 cut(s) | 292, 619 |
| Bsp1286I | GDGCHC | 2 cut(s) | 564, 687 |
| Bsp143I | GATC | 3 cut(s) | 543, 569, 691 |
| Bsp19I | CCATGG | 1 cut(s) | 630 |
| BspACI | CCGC | 1 cut(s) | 763 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 1 cut(s) | 686 |
| BspPI | GGATC | 2 cut(s) | 551, 577 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTNI | GGTCTC | 2 cut(s) | 292, 619 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 3 cut(s) | 543, 569, 691 |
| BssT1I | CCWWGG | 1 cut(s) | 630 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 510, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstF5I | GGATG | 1 cut(s) | 728 |
| BstKTI | GATC | 3 cut(s) | 546, 572, 694 |
| BstMAI | GTCTC | 2 cut(s) | 292, 619 |
| BstMBI | GATC | 3 cut(s) | 543, 569, 691 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 687 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 569 |
| BstYI | RGATCY | 1 cut(s) | 569 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 4 cut(s) | 527, 557, 593, 631 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 3 cut(s) | 184, 510, 702 |
| DpnI | GATC | 3 cut(s) | 545, 571, 693 |
| DpnII | GATC | 3 cut(s) | 543, 569, 691 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 1 cut(s) | 630 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 2 cut(s) | 292, 619 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 630 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 630 |
| FaeI | CATG | 4 cut(s) | 530, 560, 596, 634 |
| FaqI | GGGAC | 1 cut(s) | 725 |
| FatI | CATG | 4 cut(s) | 526, 556, 592, 630 |
| FokI | GGATG | 1 cut(s) | 735 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| FspBI | CTAG | 3 cut(s) | 51, 338, 708 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 4 cut(s) | 530, 560, 596, 634 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 320, 472, 653 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 652 |
| Hpy188III | TCNNGA | 3 cut(s) | 51, 386, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 5 cut(s) | 270, 368, 493, 671, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 510, 702 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 4 cut(s) | 530, 560, 596, 634 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 3 cut(s) | 543, 569, 691 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 3 cut(s) | 51, 338, 708 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 505, 665, 758 |
| MalI | GATC | 3 cut(s) | 545, 571, 693 |
| MboI | GATC | 3 cut(s) | 543, 569, 691 |
| MboII | GAAGA | 6 cut(s) | 179, 275, 278, 308, 481, 622 |
| MflI | RGATCY | 1 cut(s) | 569 |
| MhlI | GDGCHC | 2 cut(s) | 564, 687 |
| MluCI | AATT | 7 cut(s) | 17, 411, 416, 428, 619, 658, 715 |
| MlyI | GAGTC | 4 cut(s) | 214, 314, 466, 662 |
| MnlI | CCTC | 3 cut(s) | 181, 674, 745 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 4 cut(s) | 140, 414, 422, 500 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 747 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NcoI | CCATGG | 1 cut(s) | 630 |
| NdeII | GATC | 3 cut(s) | 543, 569, 691 |
| NlaIII | CATG | 4 cut(s) | 530, 560, 596, 634 |
| NlaIV | GGNNCC | 1 cut(s) | 686 |
| NmuCI | GTSAC | 2 cut(s) | 317, 665 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 4 cut(s) | 214, 314, 466, 661 |
| PpsI | GAGTC | 4 cut(s) | 214, 314, 466, 661 |
| PshBI | ATTAAT | 1 cut(s) | 500 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 1 cut(s) | 686 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PsuI | RGATCY | 1 cut(s) | 569 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 747 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 4 cut(s) | 140, 414, 422, 500 |
| Sau3AI | GATC | 3 cut(s) | 543, 569, 691 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 4 cut(s) | 214, 314, 466, 662 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 2 cut(s) | 564, 687 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 747 |
| SmlI | CTYRAG | 2 cut(s) | 119, 156 |
| SmoI | CTYRAG | 2 cut(s) | 119, 156 |
| Sse9I | AATT | 7 cut(s) | 17, 411, 416, 428, 619, 658, 715 |
| SsiI | CCGC | 1 cut(s) | 763 |
| SspMI | CTAG | 3 cut(s) | 51, 338, 708 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| StyI | CCWWGG | 1 cut(s) | 630 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 2 cut(s) | 294, 694 |
| TasI | AATT | 7 cut(s) | 17, 411, 416, 428, 619, 658, 715 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 4 cut(s) | 140, 414, 422, 500 |
| Tru9I | TTAA | 4 cut(s) | 140, 414, 422, 500 |
| TseFI | GTSAC | 2 cut(s) | 317, 665 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 665 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 545 |
| TspGWI | ACGGA | 2 cut(s) | 305, 556 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| VspI | ATTAAT | 1 cut(s) | 500 |
| XapI | RAATTY | 2 cut(s) | 416, 428 |
| XbaI | TCTAGA | 1 cut(s) | 50 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 51, 338, 708 |