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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 62 |
| AccB1I | GGYRCC | 2 cut(s) | 446, 527 |
| AciI | CCGC | 2 cut(s) | 181, 450 |
| AcyI | GRCGYC | 1 cut(s) | 528 |
| AfaI | GTAC | 1 cut(s) | 350 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 476 |
| AgsI | TTSAA | 1 cut(s) | 563 |
| AjiI | CACGTC | 3 cut(s) | 41, 66, 238 |
| AjnI | CCWGG | 2 cut(s) | 231, 532 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 390, 422 |
| AluBI | AGCT | 2 cut(s) | 257, 263 |
| AluI | AGCT | 2 cut(s) | 257, 263 |
| Alw26I | GTCTC | 1 cut(s) | 394 |
| Ama87I | CYCGRG | 1 cut(s) | 221 |
| ApeKI | GCWGC | 1 cut(s) | 281 |
| AspA2I | CCTAGG | 1 cut(s) | 470 |
| AspLEI | GCGC | 1 cut(s) | 530 |
| AspS9I | GGNCC | 2 cut(s) | 4, 53 |
| AsuHPI | GGTGA | 3 cut(s) | 533, 541, 548 |
| AvaI | CYCGRG | 1 cut(s) | 221 |
| AvaII | GGWCC | 2 cut(s) | 4, 53 |
| AvrII | CCTAGG | 1 cut(s) | 470 |
| BanI | GGYRCC | 2 cut(s) | 446, 527 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| BbvI | GCAGC | 1 cut(s) | 293 |
| BccI | CCATC | 3 cut(s) | 317, 518, 522 |
| BciT130I | CCWGG | 2 cut(s) | 233, 534 |
| BcoDI | GTCTC | 1 cut(s) | 394 |
| BfaI | CTAG | 3 cut(s) | 228, 440, 471 |
| BfmI | CTRYAG | 1 cut(s) | 198 |
| BfoI | RGCGCY | 1 cut(s) | 531 |
| BfuAI | ACCTGC | 1 cut(s) | 62 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 290 |
| BisI | GCNGC | 1 cut(s) | 282 |
| BlnI | CCTAGG | 1 cut(s) | 470 |
| BlsI | GCNGC | 1 cut(s) | 283 |
| Bme1390I | CCNGG | 2 cut(s) | 233, 534 |
| Bme18I | GGWCC | 2 cut(s) | 4, 53 |
| BmeT110I | CYCGRG | 1 cut(s) | 221 |
| BmgBI | CACGTC | 3 cut(s) | 41, 66, 238 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 53 |
| BmiI | GGNNCC | 4 cut(s) | 6, 55, 448, 529 |
| BmrFI | CCNGG | 2 cut(s) | 233, 534 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BpmI | CTGGAG | 1 cut(s) | 329 |
| BpuEI | CTTGAG | 2 cut(s) | 176, 243 |
| BsaHI | GRCGYC | 1 cut(s) | 528 |
| BsaI | GGTCTC | 1 cut(s) | 394 |
| BsaJI | CCNNGG | 3 cut(s) | 470, 501, 532 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 476 |
| Bse1I | ACTGG | 2 cut(s) | 151, 346 |
| Bse3DI | GCAATG | 1 cut(s) | 425 |
| BseBI | CCWGG | 2 cut(s) | 233, 534 |
| BseDI | CCNNGG | 3 cut(s) | 470, 501, 532 |
| BseGI | GGATG | 3 cut(s) | 108, 312, 340 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 476 |
| BseMI | GCAATG | 1 cut(s) | 425 |
| BseNI | ACTGG | 2 cut(s) | 151, 346 |
| BseXI | GCAGC | 1 cut(s) | 293 |
| BshNI | GGYRCC | 2 cut(s) | 446, 527 |
| BsiHKCI | CYCGRG | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 476 |
| BsmAI | GTCTC | 1 cut(s) | 394 |
| BsmI | GAATGC | 1 cut(s) | 482 |
| Bso31I | GGTCTC | 1 cut(s) | 394 |
| BsoBI | CYCGRG | 1 cut(s) | 221 |
| Bsp19I | CCATGG | 1 cut(s) | 501 |
| BspACI | CCGC | 2 cut(s) | 181, 450 |
| BspLI | GGNNCC | 4 cut(s) | 6, 55, 448, 529 |
| BspMI | ACCTGC | 1 cut(s) | 62 |
| BspT107I | GGYRCC | 2 cut(s) | 446, 527 |
| BspTNI | GGTCTC | 1 cut(s) | 394 |
| BsrDI | GCAATG | 1 cut(s) | 425 |
| BsrI | ACTGG | 2 cut(s) | 151, 346 |
| BssECI | CCNNGG | 3 cut(s) | 470, 501, 532 |
| BssNI | GRCGYC | 1 cut(s) | 528 |
| BssT1I | CCWWGG | 2 cut(s) | 470, 501 |
| Bst2UI | CCWGG | 2 cut(s) | 233, 534 |
| Bst4CI | ACNGT | 4 cut(s) | 81, 95, 247, 464 |
| BstACI | GRCGYC | 1 cut(s) | 528 |
| BstC8I | GCNNGC | 2 cut(s) | 185, 255 |
| BstDEI | CTNAG | 1 cut(s) | 286 |
| BstDSI | CCRYGG | 1 cut(s) | 501 |
| BstF5I | GGATG | 3 cut(s) | 108, 312, 340 |
| BstH2I | RGCGCY | 1 cut(s) | 531 |
| BstHHI | GCGC | 1 cut(s) | 530 |
| BstMAI | GTCTC | 1 cut(s) | 394 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 19, 43, 68, 269, 278, 290, 299 |
| BstNI | CCWGG | 2 cut(s) | 233, 534 |
| BstSCI | CCNGG | 2 cut(s) | 231, 532 |
| BstSFI | CTRYAG | 1 cut(s) | 198 |
| BstV1I | GCAGC | 1 cut(s) | 293 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| BtgI | CCRYGG | 1 cut(s) | 501 |
| BtrI | CACGTC | 3 cut(s) | 41, 66, 238 |
| BtsCI | GGATG | 3 cut(s) | 108, 312, 340 |
| BtsI | GCAGTG | 3 cut(s) | 8, 32, 57 |
| BtsIMutI | CAGTG | 3 cut(s) | 8, 32, 57 |
| BveI | ACCTGC | 1 cut(s) | 62 |
| Cac8I | GCNNGC | 2 cut(s) | 185, 255 |
| CfoI | GCGC | 1 cut(s) | 530 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 53 |
| CseI | GACGC | 1 cut(s) | 499 |
| Csp6I | GTAC | 1 cut(s) | 349 |
| CviAII | CATG | 3 cut(s) | 419, 502, 518 |
| CviJI | RGCY | 9 cut(s) | 150, 197, 226, 231, 257, 263, 284, 308, 469 |
| CviKI_1 | RGCY | 9 cut(s) | 150, 197, 226, 231, 257, 263, 284, 308, 469 |
| CviQI | GTAC | 1 cut(s) | 349 |
| DdeI | CTNAG | 1 cut(s) | 286 |
| DinI | GGCGCC | 1 cut(s) | 529 |
| EciI | GGCGGA | 1 cut(s) | 170 |
| Eco130I | CCWWGG | 2 cut(s) | 470, 501 |
| Eco31I | GGTCTC | 1 cut(s) | 394 |
| Eco32I | GATATC | 2 cut(s) | 158, 178 |
| Eco47I | GGWCC | 2 cut(s) | 4, 53 |
| Eco88I | CYCGRG | 1 cut(s) | 221 |
| EcoO109I | RGGNCCY | 2 cut(s) | 4, 53 |
| EcoRII | CCWGG | 2 cut(s) | 231, 532 |
| EcoRV | GATATC | 2 cut(s) | 158, 178 |
| EcoT14I | CCWWGG | 2 cut(s) | 470, 501 |
| EgeI | GGCGCC | 1 cut(s) | 529 |
| EheI | GGCGCC | 1 cut(s) | 529 |
| ErhI | CCWWGG | 2 cut(s) | 470, 501 |
| FaeI | CATG | 3 cut(s) | 422, 505, 521 |
| FatI | CATG | 3 cut(s) | 418, 501, 517 |
| FauNDI | CATATG | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 1 cut(s) | 282 |
| FokI | GGATG | 3 cut(s) | 115, 299, 347 |
| Fsp4HI | GCNGC | 1 cut(s) | 282 |
| FspBI | CTAG | 3 cut(s) | 228, 440, 471 |
| GlaI | GCGC | 1 cut(s) | 529 |
| GluI | GCNGC | 1 cut(s) | 282 |
| GsuI | CTGGAG | 1 cut(s) | 329 |
| HaeII | RGCGCY | 1 cut(s) | 531 |
| HgaI | GACGC | 1 cut(s) | 499 |
| HhaI | GCGC | 1 cut(s) | 530 |
| Hin1I | GRCGYC | 1 cut(s) | 528 |
| Hin1II | CATG | 3 cut(s) | 422, 505, 521 |
| Hin6I | GCGC | 1 cut(s) | 528 |
| HinP1I | GCGC | 1 cut(s) | 528 |
| HincII | GTYRAC | 3 cut(s) | 77, 91, 98 |
| HindII | GTYRAC | 3 cut(s) | 77, 91, 98 |
| HindIII | AAGCTT | 1 cut(s) | 261 |
| HinfI | GANTC | 5 cut(s) | 204, 217, 322, 338, 422 |
| HphI | GGTGA | 3 cut(s) | 533, 541, 548 |
| Hpy166II | GTNNAC | 4 cut(s) | 77, 91, 98, 460 |
| Hpy188III | TCNNGA | 4 cut(s) | 153, 173, 221, 434 |
| Hpy8I | GTNNAC | 4 cut(s) | 77, 91, 98, 460 |
| HpyAV | CCTTC | 2 cut(s) | 372, 437 |
| HpyCH4III | ACNGT | 4 cut(s) | 81, 95, 247, 464 |
| HpyCH4IV | ACGT | 4 cut(s) | 40, 65, 237, 414 |
| HpyCH4V | TGCA | 1 cut(s) | 482 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 19, 43, 68, 269, 278, 290, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 286 |
| HpySE526I | ACGT | 4 cut(s) | 40, 65, 237, 414 |
| Hsp92I | GRCGYC | 1 cut(s) | 528 |
| Hsp92II | CATG | 3 cut(s) | 422, 505, 521 |
| HspAI | GCGC | 1 cut(s) | 528 |
| KasI | GGCGCC | 1 cut(s) | 527 |
| LmnI | GCTCC | 2 cut(s) | 136, 348 |
| Lsp1109I | GCAGC | 1 cut(s) | 293 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 3 cut(s) | 228, 440, 471 |
| MaeII | ACGT | 4 cut(s) | 40, 65, 237, 414 |
| MaeIII | GTNAC | 1 cut(s) | 107 |
| MboII | GAAGA | 3 cut(s) | 377, 380, 410 |
| MluCI | AATT | 1 cut(s) | 119 |
| Mly113I | GGCGCC | 1 cut(s) | 528 |
| MlyI | GAGTC | 2 cut(s) | 316, 416 |
| MnlI | CCTC | 2 cut(s) | 283, 463 |
| MslI | CAYNNNNRTG | 4 cut(s) | 317, 333, 519, 522 |
| MspR9I | CCNGG | 2 cut(s) | 233, 534 |
| Mva1269I | GAATGC | 1 cut(s) | 482 |
| MvaI | CCWGG | 2 cut(s) | 233, 534 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 19, 43, 68, 269, 278, 290, 299 |
| NarI | GGCGCC | 1 cut(s) | 528 |
| NcoI | CCATGG | 1 cut(s) | 501 |
| NdeI | CATATG | 1 cut(s) | 330 |
| NlaIII | CATG | 3 cut(s) | 422, 505, 521 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 55, 448, 529 |
| PaeR7I | CTCGAG | 1 cut(s) | 221 |
| PctI | GAATGC | 1 cut(s) | 482 |
| PfeI | GAWTC | 3 cut(s) | 204, 217, 338 |
| PkrI | GCNGC | 1 cut(s) | 283 |
| PleI | GAGTC | 2 cut(s) | 316, 416 |
| PluTI | GGCGCC | 1 cut(s) | 531 |
| PpsI | GAGTC | 2 cut(s) | 316, 416 |
| PpuMI | RGGWCCY | 2 cut(s) | 4, 53 |
| Psp5II | RGGWCCY | 2 cut(s) | 4, 53 |
| Psp6I | CCWGG | 2 cut(s) | 231, 532 |
| PspGI | CCWGG | 2 cut(s) | 231, 532 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 55, 448, 529 |
| PspPI | GGNCC | 2 cut(s) | 4, 53 |
| PspPPI | RGGWCCY | 2 cut(s) | 4, 53 |
| RsaI | GTAC | 1 cut(s) | 350 |
| RsaNI | GTAC | 1 cut(s) | 349 |
| RseI | CAYNNNNRTG | 4 cut(s) | 317, 333, 519, 522 |
| SatI | GCNGC | 1 cut(s) | 282 |
| Sau96I | GGNCC | 2 cut(s) | 4, 53 |
| SchI | GAGTC | 2 cut(s) | 316, 416 |
| ScrFI | CCNGG | 2 cut(s) | 233, 534 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 198 |
| SfoI | GGCGCC | 1 cut(s) | 529 |
| Sfr274I | CTCGAG | 1 cut(s) | 221 |
| SinI | GGWCC | 2 cut(s) | 4, 53 |
| SlaI | CTCGAG | 1 cut(s) | 221 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 317, 333, 519, 522 |
| SmlI | CTYRAG | 3 cut(s) | 191, 221, 258 |
| SmoI | CTYRAG | 3 cut(s) | 191, 221, 258 |
| Sse9I | AATT | 1 cut(s) | 119 |
| SsiI | CCGC | 2 cut(s) | 181, 450 |
| SspDI | GGCGCC | 1 cut(s) | 527 |
| SspMI | CTAG | 3 cut(s) | 228, 440, 471 |
| StyD4I | CCNGG | 2 cut(s) | 231, 532 |
| StyI | CCWWGG | 2 cut(s) | 470, 501 |
| TaaI | ACNGT | 4 cut(s) | 81, 95, 247, 464 |
| TaiI | ACGT | 4 cut(s) | 43, 68, 240, 417 |
| TaqI | TCGA | 2 cut(s) | 222, 396 |
| TasI | AATT | 1 cut(s) | 119 |
| TfiI | GAWTC | 3 cut(s) | 204, 217, 338 |
| TscAI | CASTG | 3 cut(s) | 15, 39, 64 |
| TseI | GCWGC | 1 cut(s) | 281 |
| TspDTI | ATGAA | 2 cut(s) | 374, 378 |
| TspGWI | ACGGA | 2 cut(s) | 115, 445 |
| TspRI | CASTG | 3 cut(s) | 15, 39, 64 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 53 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 521 |
| XhoI | CTCGAG | 1 cut(s) | 221 |
| XmaJI | CCTAGG | 1 cut(s) | 470 |
| XspI | CTAG | 3 cut(s) | 228, 440, 471 |