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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 414 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclI | AACGTT | 1 cut(s) | 57 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AgsI | TTSAA | 2 cut(s) | 121, 332 |
| AluBI | AGCT | 4 cut(s) | 307, 317, 521, 572 |
| AluI | AGCT | 4 cut(s) | 307, 317, 521, 572 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 523 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 296 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 2 cut(s) | 388, 529 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BanII | GRGCYC | 2 cut(s) | 309, 523 |
| BauI | CACGAG | 1 cut(s) | 522 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 523 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BclI | TGATCA | 1 cut(s) | 189 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 3 cut(s) | 18, 83, 608 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 1 cut(s) | 431 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 523 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 432, 523 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 2 cut(s) | 301, 574 |
| BspLI | GGNNCC | 1 cut(s) | 431 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssMI | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| BssSI | CACGAG | 1 cut(s) | 522 |
| Bst2BI | CACGAG | 1 cut(s) | 522 |
| BstDEI | CTNAG | 3 cut(s) | 255, 420, 452 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstKTI | GATC | 5 cut(s) | 192, 291, 374, 595, 607 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 436 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 184 |
| CciI | TCATGA | 2 cut(s) | 301, 574 |
| CfoI | GCGC | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| CviAII | CATG | 3 cut(s) | 302, 338, 575 |
| CviJI | RGCY | 6 cut(s) | 25, 102, 307, 317, 521, 572 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 102, 307, 317, 521, 572 |
| DdeI | CTNAG | 3 cut(s) | 255, 420, 452 |
| DpnI | GATC | 5 cut(s) | 191, 290, 373, 594, 606 |
| DpnII | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 521 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 523 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 521 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 521 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 523 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 3 cut(s) | 305, 341, 578 |
| FatI | CATG | 3 cut(s) | 301, 337, 574 |
| FbaI | TGATCA | 1 cut(s) | 189 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 523 |
| FspBI | CTAG | 3 cut(s) | 18, 83, 608 |
| GlaI | GCGC | 1 cut(s) | 415 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 578 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HinfI | GANTC | 3 cut(s) | 65, 217, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 2 cut(s) | 388, 529 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| HpyAV | CCTTC | 2 cut(s) | 15, 238 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 469, 502 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 436 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 420, 452 |
| HpySE526I | ACGT | 3 cut(s) | 57, 469, 502 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 578 |
| HspAI | GCGC | 1 cut(s) | 414 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Ksp22I | TGATCA | 1 cut(s) | 189 |
| Kzo9I | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 6 cut(s) | 83, 90, 267, 408, 450, 459 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 3 cut(s) | 18, 83, 608 |
| MaeII | ACGT | 3 cut(s) | 57, 469, 502 |
| MaeIII | GTNAC | 3 cut(s) | 62, 503, 535 |
| MalI | GATC | 5 cut(s) | 191, 290, 373, 594, 606 |
| MboI | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 226, 367, 539, 602, 611 |
| MhlI | GDGCHC | 3 cut(s) | 309, 432, 523 |
| MluCI | AATT | 4 cut(s) | 267, 364, 403, 531 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 3 cut(s) | 113, 419, 427 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspI | CCGG | 1 cut(s) | 395 |
| MvnI | CGCG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 436 |
| NdeII | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 578 |
| NlaIV | GGNNCC | 1 cut(s) | 431 |
| NmuCI | GTSAC | 2 cut(s) | 62, 535 |
| PagI | TCATGA | 2 cut(s) | 301, 574 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 523 |
| Psp1406I | AACGTT | 1 cut(s) | 57 |
| PspN4I | GGNNCC | 1 cut(s) | 431 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SacI | GAGCTC | 2 cut(s) | 309, 523 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 5 cut(s) | 189, 288, 371, 592, 604 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 3 cut(s) | 309, 432, 523 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| Sse9I | AATT | 4 cut(s) | 267, 364, 403, 531 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspMI | CTAG | 3 cut(s) | 18, 83, 608 |
| SstI | GAGCTC | 2 cut(s) | 309, 523 |
| TaiI | ACGT | 3 cut(s) | 60, 472, 505 |
| TaqI | TCGA | 2 cut(s) | 265, 368 |
| TasI | AATT | 4 cut(s) | 267, 364, 403, 531 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseFI | GTSAC | 2 cut(s) | 62, 535 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 535 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 185, 290, 335 |
| TspGWI | ACGGA | 1 cut(s) | 301 |
| TspRI | CASTG | 1 cut(s) | 184 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XbaI | TCTAGA | 1 cut(s) | 607 |
| XspI | CTAG | 3 cut(s) | 18, 83, 608 |