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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1196 |
| AccII | CGCG | 1 cut(s) | 1577 |
| AccIII | TCCGGA | 1 cut(s) | 1435 |
| AciI | CCGC | 8 cut(s) | 80, 628, 1117, 1379, 1382, 1385, 1532, 1577 |
| AclWI | GGATC | 5 cut(s) | 141, 188, 998, 1068, 1446 |
| AcoI | YGGCCR | 4 cut(s) | 234, 254, 1183, 1529 |
| AcsI | RAATTY | 4 cut(s) | 9, 116, 330, 977 |
| AcuI | CTGAAG | 4 cut(s) | 392, 417, 468, 776 |
| AcyI | GRCGYC | 1 cut(s) | 1197 |
| AfaI | GTAC | 2 cut(s) | 438, 797 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 259 |
| AgeI | ACCGGT | 1 cut(s) | 1565 |
| AgsI | TTSAA | 6 cut(s) | 185, 353, 925, 1071, 1234, 1628 |
| AjiI | CACGTC | 1 cut(s) | 506 |
| AjnI | CCWGG | 6 cut(s) | 197, 415, 440, 654, 678, 1619 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 837, 869 |
| AluBI | AGCT | 9 cut(s) | 266, 356, 412, 704, 710, 731, 1009, 1019, 1319 |
| AluI | AGCT | 9 cut(s) | 266, 356, 412, 704, 710, 731, 1009, 1019, 1319 |
| Alw21I | GWGCWC | 3 cut(s) | 1011, 1321, 1584 |
| Alw26I | GTCTC | 5 cut(s) | 56, 841, 1183, 1260, 1474 |
| Alw44I | GTGCAC | 1 cut(s) | 1580 |
| AlwI | GGATC | 5 cut(s) | 141, 188, 998, 1068, 1446 |
| Ama87I | CYCGRG | 4 cut(s) | 127, 668, 1499, 1608 |
| Aor13HI | TCCGGA | 1 cut(s) | 1435 |
| AoxI | GGCC | 9 cut(s) | 216, 234, 254, 394, 642, 1183, 1529, 1617, 1650 |
| ApaLI | GTGCAC | 1 cut(s) | 1580 |
| ApeKI | GCWGC | 2 cut(s) | 52, 728 |
| ApoI | RAATTY | 4 cut(s) | 9, 116, 330, 977 |
| AsiGI | ACCGGT | 1 cut(s) | 1565 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 348, 954 |
| AspLEI | GCGC | 3 cut(s) | 1199, 1240, 1577 |
| AsuHPI | GGTGA | 2 cut(s) | 292, 1580 |
| AvaI | CYCGRG | 4 cut(s) | 127, 668, 1499, 1608 |
| AvaII | GGWCC | 7 cut(s) | 124, 156, 419, 445, 469, 492, 1392 |
| BaeGI | GKGCMC | 2 cut(s) | 1306, 1584 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 420, 453 |
| BalI | TGGCCA | 1 cut(s) | 1185 |
| BanI | GGYRCC | 1 cut(s) | 1196 |
| BanII | GRGCYC | 2 cut(s) | 1011, 1321 |
| BbsI | GAAGAC | 1 cut(s) | 822 |
| Bbv12I | GWGCWC | 3 cut(s) | 1011, 1321, 1584 |
| BbvI | GCAGC | 2 cut(s) | 39, 740 |
| BccI | CCATC | 9 cut(s) | 311, 641, 764, 776, 891, 1224, 1498, 1565, 1634 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 890, 924, 1466, 1500 |
| BciT130I | CCWGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| BciVI | GTATCC | 1 cut(s) | 652 |
| BclI | TGATCA | 1 cut(s) | 1294 |
| BcoDI | GTCTC | 5 cut(s) | 56, 841, 1183, 1260, 1474 |
| BfaI | CTAG | 4 cut(s) | 56, 675, 822, 887 |
| BfmI | CTRYAG | 2 cut(s) | 452, 1442 |
| BfoI | RGCGCY | 2 cut(s) | 1200, 1241 |
| BfuI | GTATCC | 1 cut(s) | 652 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 142 |
| BisI | GCNGC | 6 cut(s) | 53, 81, 729, 1380, 1383, 1532 |
| BlsI | GCNGC | 6 cut(s) | 54, 82, 730, 1381, 1384, 1533 |
| Bme1390I | CCNGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| Bme18I | GGWCC | 7 cut(s) | 124, 156, 419, 445, 469, 492, 1392 |
| BmeT110I | CYCGRG | 4 cut(s) | 127, 668, 1499, 1608 |
| BmgBI | CACGTC | 1 cut(s) | 506 |
| BmrFI | CCNGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| BmsI | GCATC | 4 cut(s) | 472, 643, 1056, 1579 |
| BpiI | GAAGAC | 1 cut(s) | 822 |
| BpuEI | CTTGAG | 2 cut(s) | 623, 690 |
| BsaHI | GRCGYC | 1 cut(s) | 1197 |
| BsaI | GGTCTC | 1 cut(s) | 841 |
| BsaJI | CCNNGG | 7 cut(s) | 150, 197, 440, 441, 1077, 1620, 1631 |
| BsaWI | WCCGGW | 6 cut(s) | 211, 259, 371, 546, 1435, 1565 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1161, 1191, 1332, 1362 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 259 |
| Bse118I | RCCGGY | 3 cut(s) | 232, 252, 1565 |
| Bse1I | ACTGG | 4 cut(s) | 295, 397, 598, 614 |
| BseAI | TCCGGA | 1 cut(s) | 1435 |
| BseBI | CCWGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| BseDI | CCNNGG | 7 cut(s) | 150, 197, 440, 441, 1077, 1620, 1631 |
| BseGI | GGATG | 5 cut(s) | 759, 787, 1045, 1047, 1594 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 259 |
| BseNI | ACTGG | 4 cut(s) | 295, 397, 598, 614 |
| BseRI | GAGGAG | 2 cut(s) | 74, 1584 |
| BseSI | GKGCMC | 2 cut(s) | 1306, 1584 |
| BseX3I | CGGCCG | 1 cut(s) | 1529 |
| BseXI | GCAGC | 2 cut(s) | 39, 740 |
| Bsh1236I | CGCG | 1 cut(s) | 1577 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1532 |
| BshFI | GGCC | 9 cut(s) | 218, 236, 256, 396, 644, 1185, 1531, 1619, 1652 |
| BshNI | GGYRCC | 1 cut(s) | 1196 |
| BshTI | ACCGGT | 1 cut(s) | 1565 |
| BsiEI | CGRYCG | 1 cut(s) | 1532 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1011, 1321, 1584 |
| BsiHKCI | CYCGRG | 4 cut(s) | 127, 668, 1499, 1608 |
| BsiSI | CCGG | 9 cut(s) | 212, 233, 253, 260, 372, 547, 1436, 1554, 1566 |
| BslFI | GGGAC | 2 cut(s) | 110, 458 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 259 |
| BsmAI | GTCTC | 5 cut(s) | 56, 841, 1183, 1260, 1474 |
| BsmBI | CGTCTC | 2 cut(s) | 1183, 1260 |
| BsmFI | GGGAC | 2 cut(s) | 110, 458 |
| BsnI | GGCC | 9 cut(s) | 218, 236, 256, 396, 644, 1185, 1531, 1619, 1652 |
| Bso31I | GGTCTC | 1 cut(s) | 841 |
| BsoBI | CYCGRG | 4 cut(s) | 127, 668, 1499, 1608 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1011, 1306, 1321, 1584 |
| Bsp13I | TCCGGA | 1 cut(s) | 1435 |
| Bsp143I | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| BspACI | CCGC | 8 cut(s) | 80, 628, 1117, 1379, 1382, 1385, 1532, 1577 |
| BspANI | GGCC | 9 cut(s) | 218, 236, 256, 396, 644, 1185, 1531, 1619, 1652 |
| BspEI | TCCGGA | 1 cut(s) | 1435 |
| BspFNI | CGCG | 1 cut(s) | 1577 |
| BspHI | TCATGA | 1 cut(s) | 1003 |
| BspMAI | CTGCAG | 1 cut(s) | 456 |
| BspPI | GGATC | 5 cut(s) | 141, 188, 998, 1068, 1446 |
| BspT107I | GGYRCC | 1 cut(s) | 1196 |
| BspTNI | GGTCTC | 1 cut(s) | 841 |
| BsrFI | RCCGGY | 3 cut(s) | 232, 252, 1565 |
| BsrI | ACTGG | 4 cut(s) | 295, 397, 598, 614 |
| BssAI | RCCGGY | 3 cut(s) | 232, 252, 1565 |
| BssECI | CCNNGG | 7 cut(s) | 150, 197, 440, 441, 1077, 1620, 1631 |
| BssMI | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| BssNI | GRCGYC | 1 cut(s) | 1197 |
| BssT1I | CCWWGG | 1 cut(s) | 1631 |
| Bst2UI | CCWGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| Bst4CI | ACNGT | 5 cut(s) | 516, 694, 1335, 1446, 1545 |
| Bst6I | CTCTTC | 1 cut(s) | 1138 |
| BstACI | GRCGYC | 1 cut(s) | 1197 |
| BstC8I | GCNNGC | 5 cut(s) | 71, 143, 632, 702, 1475 |
| BstDEI | CTNAG | 1 cut(s) | 1209 |
| BstDSI | CCRYGG | 2 cut(s) | 150, 1077 |
| BstF5I | GGATG | 5 cut(s) | 759, 787, 1045, 1047, 1594 |
| BstFNI | CGCG | 1 cut(s) | 1577 |
| BstH2I | RGCGCY | 2 cut(s) | 1200, 1241 |
| BstHHI | GCGC | 3 cut(s) | 1199, 1240, 1577 |
| BstKTI | GATC | 7 cut(s) | 77, 149, 196, 993, 1076, 1297, 1441 |
| BstMAI | GTCTC | 5 cut(s) | 56, 841, 1183, 1260, 1474 |
| BstMBI | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| BstMCI | CGRYCG | 1 cut(s) | 1532 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 142, 353, 460, 485, 716, 725, 737, 746 |
| BstNI | CCWGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| BstNSI | RCATGY | 2 cut(s) | 688, 1477 |
| BstSCI | CCNGG | 6 cut(s) | 197, 415, 440, 654, 678, 1619 |
| BstSFI | CTRYAG | 2 cut(s) | 452, 1442 |
| BstSLI | GKGCMC | 2 cut(s) | 1306, 1584 |
| BstUI | CGCG | 1 cut(s) | 1577 |
| BstV1I | GCAGC | 2 cut(s) | 39, 740 |
| BstV2I | GAAGAC | 1 cut(s) | 822 |
| BstX2I | RGATCY | 2 cut(s) | 1073, 1438 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1193, 1223 |
| BstYI | RGATCY | 2 cut(s) | 1073, 1438 |
| BstZI | CGGCCG | 1 cut(s) | 1529 |
| BsuI | GTATCC | 1 cut(s) | 652 |
| BsuRI | GGCC | 9 cut(s) | 218, 236, 256, 396, 644, 1185, 1531, 1619, 1652 |
| BtgI | CCRYGG | 2 cut(s) | 150, 1077 |
| BtrI | CACGTC | 1 cut(s) | 506 |
| BtsCI | GGATG | 5 cut(s) | 759, 787, 1045, 1047, 1594 |
| BtsI | GCAGTG | 3 cut(s) | 423, 449, 474 |
| BtsIMutI | CAGTG | 4 cut(s) | 423, 449, 474, 607 |
| Cac8I | GCNNGC | 5 cut(s) | 71, 143, 632, 702, 1475 |
| CciI | TCATGA | 1 cut(s) | 1003 |
| CfoI | GCGC | 3 cut(s) | 1199, 1240, 1577 |
| Cfr10I | RCCGGY | 3 cut(s) | 232, 252, 1565 |
| CseI | GACGC | 1 cut(s) | 1537 |
| Csp6I | GTAC | 2 cut(s) | 437, 796 |
| CspAI | ACCGGT | 1 cut(s) | 1565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1059, 1094 |
| CviAII | CATG | 7 cut(s) | 685, 1004, 1134, 1187, 1322, 1474, 1585 |
| CviQI | GTAC | 2 cut(s) | 437, 796 |
| DdeI | CTNAG | 1 cut(s) | 1209 |
| DinI | GGCGCC | 1 cut(s) | 1198 |
| DpnI | GATC | 7 cut(s) | 76, 148, 195, 992, 1075, 1296, 1440 |
| DpnII | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| EaeI | YGGCCR | 4 cut(s) | 234, 254, 1183, 1529 |
| EagI | CGGCCG | 1 cut(s) | 1529 |
| Eam1104I | CTCTTC | 1 cut(s) | 1138 |
| EarI | CTCTTC | 1 cut(s) | 1138 |
| EciI | GGCGGA | 2 cut(s) | 617, 1400 |
| Ecl136II | GAGCTC | 2 cut(s) | 1009, 1319 |
| EclXI | CGGCCG | 1 cut(s) | 1529 |
| Eco130I | CCWWGG | 1 cut(s) | 1631 |
| Eco24I | GRGCYC | 2 cut(s) | 1011, 1321 |
| Eco31I | GGTCTC | 1 cut(s) | 841 |
| Eco47I | GGWCC | 7 cut(s) | 124, 156, 419, 445, 469, 492, 1392 |
| Eco52I | CGGCCG | 1 cut(s) | 1529 |
| Eco53kI | GAGCTC | 2 cut(s) | 1009, 1319 |
| Eco57I | CTGAAG | 4 cut(s) | 392, 417, 468, 776 |
| Eco88I | CYCGRG | 4 cut(s) | 127, 668, 1499, 1608 |
| EcoICRI | GAGCTC | 2 cut(s) | 1009, 1319 |
| EcoO109I | RGGNCCY | 7 cut(s) | 124, 156, 217, 419, 445, 469, 1650 |
| EcoRII | CCWGG | 6 cut(s) | 197, 415, 440, 654, 678, 1619 |
| EcoT14I | CCWWGG | 1 cut(s) | 1631 |
| EcoT38I | GRGCYC | 2 cut(s) | 1011, 1321 |
| EgeI | GGCGCC | 1 cut(s) | 1198 |
| EheI | GGCGCC | 1 cut(s) | 1198 |
| ErhI | CCWWGG | 1 cut(s) | 1631 |
| Esp3I | CGTCTC | 2 cut(s) | 1183, 1260 |
| FaeI | CATG | 7 cut(s) | 688, 1007, 1137, 1190, 1325, 1477, 1588 |
| FaqI | GGGAC | 2 cut(s) | 110, 458 |
| FatI | CATG | 7 cut(s) | 684, 1003, 1133, 1186, 1321, 1473, 1584 |
| FauNDI | CATATG | 1 cut(s) | 777 |
| FbaI | TGATCA | 1 cut(s) | 1294 |
| Fnu4HI | GCNGC | 6 cut(s) | 53, 81, 729, 1380, 1383, 1532 |
| FokI | GGATG | 5 cut(s) | 746, 794, 1034, 1052, 1601 |
| FriOI | GRGCYC | 2 cut(s) | 1011, 1321 |
| Fsp4HI | GCNGC | 6 cut(s) | 53, 81, 729, 1380, 1383, 1532 |
| FspBI | CTAG | 4 cut(s) | 56, 675, 822, 887 |
| GlaI | GCGC | 3 cut(s) | 1198, 1239, 1576 |
| GluI | GCNGC | 6 cut(s) | 53, 81, 729, 1380, 1383, 1532 |
| HaeII | RGCGCY | 2 cut(s) | 1200, 1241 |
| HaeIII | GGCC | 9 cut(s) | 218, 236, 256, 396, 644, 1185, 1531, 1619, 1652 |
| HapII | CCGG | 9 cut(s) | 212, 233, 253, 260, 372, 547, 1436, 1554, 1566 |
| HgaI | GACGC | 1 cut(s) | 1537 |
| HhaI | GCGC | 3 cut(s) | 1199, 1240, 1577 |
| Hin1I | GRCGYC | 1 cut(s) | 1197 |
| Hin1II | CATG | 7 cut(s) | 688, 1007, 1137, 1190, 1325, 1477, 1588 |
| Hin6I | GCGC | 3 cut(s) | 1197, 1238, 1575 |
| HinP1I | GCGC | 3 cut(s) | 1197, 1238, 1575 |
| HincII | GTYRAC | 2 cut(s) | 519, 538 |
| HindII | GTYRAC | 2 cut(s) | 519, 538 |
| HindIII | AAGCTT | 1 cut(s) | 708 |
| HpaII | CCGG | 9 cut(s) | 212, 233, 253, 260, 372, 547, 1436, 1554, 1566 |
| HphI | GGTGA | 2 cut(s) | 292, 1580 |
| Hpy166II | GTNNAC | 6 cut(s) | 300, 519, 538, 986, 1151, 1582 |
| Hpy188I | TCNGA | 3 cut(s) | 601, 1099, 1294 |
| Hpy8I | GTNNAC | 6 cut(s) | 300, 519, 538, 986, 1151, 1582 |
| Hpy99I | CGWCG | 5 cut(s) | 51, 516, 1332, 1335, 1553 |
| HpyAV | CCTTC | 2 cut(s) | 819, 917 |
| HpyCH4III | ACNGT | 5 cut(s) | 516, 694, 1335, 1446, 1545 |
| HpyCH4IV | ACGT | 6 cut(s) | 505, 861, 1153, 1176, 1269, 1515 |
| HpyCH4V | TGCA | 4 cut(s) | 280, 454, 1477, 1582 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 142, 353, 460, 485, 716, 725, 737, 746 |
| HpyF3I | CTNAG | 1 cut(s) | 1209 |
| HpySE526I | ACGT | 6 cut(s) | 505, 861, 1153, 1176, 1269, 1515 |
| Hsp92I | GRCGYC | 1 cut(s) | 1197 |
| Hsp92II | CATG | 7 cut(s) | 688, 1007, 1137, 1190, 1325, 1477, 1588 |
| HspAI | GCGC | 3 cut(s) | 1197, 1238, 1575 |
| KasI | GGCGCC | 1 cut(s) | 1196 |
| KflI | GGGWCCC | 2 cut(s) | 124, 445 |
| Kpn2I | TCCGGA | 1 cut(s) | 1435 |
| Ksp22I | TGATCA | 1 cut(s) | 1294 |
| Kzo9I | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| LmnI | GCTCC | 4 cut(s) | 271, 583, 1438, 1597 |
| Lsp1109I | GCAGC | 2 cut(s) | 39, 740 |
| LweI | GCATC | 4 cut(s) | 472, 643, 1056, 1579 |
| MaeI | CTAG | 4 cut(s) | 56, 675, 822, 887 |
| MaeII | ACGT | 6 cut(s) | 505, 861, 1153, 1176, 1269, 1515 |
| MaeIII | GTNAC | 3 cut(s) | 554, 866, 1112 |
| MalI | GATC | 7 cut(s) | 76, 148, 195, 992, 1075, 1296, 1440 |
| MboI | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| MboII | GAAGA | 8 cut(s) | 197, 298, 387, 824, 827, 857, 1069, 1155 |
| MflI | RGATCY | 2 cut(s) | 1073, 1438 |
| MhlI | GDGCHC | 4 cut(s) | 1011, 1306, 1321, 1584 |
| MlsI | TGGCCA | 1 cut(s) | 1185 |
| MluCI | AATT | 8 cut(s) | 9, 116, 319, 330, 566, 977, 1066, 1105 |
| MluNI | TGGCCA | 1 cut(s) | 1185 |
| Mly113I | GGCGCC | 1 cut(s) | 1197 |
| MlyI | GAGTC | 4 cut(s) | 211, 466, 763, 863 |
| Mox20I | TGGCCA | 1 cut(s) | 1185 |
| MroI | TCCGGA | 1 cut(s) | 1435 |
| MroXI | GAANNNNTTC | 2 cut(s) | 348, 954 |
| MscI | TGGCCA | 1 cut(s) | 1185 |
| MseI | TTAA | 2 cut(s) | 963, 971 |
| MslI | CAYNNNNRTG | 6 cut(s) | 764, 780, 1052, 1191, 1221, 1587 |
| Msp20I | TGGCCA | 1 cut(s) | 1185 |
| MspI | CCGG | 9 cut(s) | 212, 233, 253, 260, 372, 547, 1436, 1554, 1566 |
| MspR9I | CCNGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| MvaI | CCWGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| MvnI | CGCG | 1 cut(s) | 1577 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 142, 353, 460, 485, 716, 725, 737, 746 |
| NarI | GGCGCC | 1 cut(s) | 1197 |
| NdeI | CATATG | 1 cut(s) | 777 |
| NdeII | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| NlaIII | CATG | 7 cut(s) | 688, 1007, 1137, 1190, 1325, 1477, 1588 |
| NmuCI | GTSAC | 1 cut(s) | 866 |
| NspI | RCATGY | 2 cut(s) | 688, 1477 |
| PaeI | GCATGC | 1 cut(s) | 1477 |
| PaeR7I | CTCGAG | 2 cut(s) | 668, 1499 |
| PagI | TCATGA | 1 cut(s) | 1003 |
| PasI | CCCWGGG | 1 cut(s) | 441 |
| PdmI | GAANNNNTTC | 2 cut(s) | 348, 954 |
| PfeI | GAWTC | 6 cut(s) | 43, 362, 543, 651, 664, 1100 |
| PfoI | TCCNGGA | 2 cut(s) | 415, 654 |
| PinAI | ACCGGT | 1 cut(s) | 1565 |
| PkrI | GCNGC | 6 cut(s) | 54, 82, 730, 1381, 1384, 1533 |
| PleI | GAGTC | 4 cut(s) | 210, 465, 763, 863 |
| PluTI | GGCGCC | 1 cut(s) | 1200 |
| PpsI | GAGTC | 4 cut(s) | 210, 465, 763, 863 |
| PpuMI | RGGWCCY | 5 cut(s) | 124, 156, 419, 445, 469 |
| Psp124BI | GAGCTC | 2 cut(s) | 1011, 1321 |
| Psp5II | RGGWCCY | 5 cut(s) | 124, 156, 419, 445, 469 |
| Psp6I | CCWGG | 6 cut(s) | 197, 415, 440, 654, 678, 1619 |
| PspGI | CCWGG | 6 cut(s) | 197, 415, 440, 654, 678, 1619 |
| PspPPI | RGGWCCY | 5 cut(s) | 124, 156, 419, 445, 469 |
| PstI | CTGCAG | 1 cut(s) | 456 |
| PsuI | RGATCY | 2 cut(s) | 1073, 1438 |
| RsaI | GTAC | 2 cut(s) | 438, 797 |
| RsaNI | GTAC | 2 cut(s) | 437, 796 |
| RseI | CAYNNNNRTG | 6 cut(s) | 764, 780, 1052, 1191, 1221, 1587 |
| SacI | GAGCTC | 2 cut(s) | 1011, 1321 |
| SaqAI | TTAA | 2 cut(s) | 963, 971 |
| SatI | GCNGC | 6 cut(s) | 53, 81, 729, 1380, 1383, 1532 |
| Sau3AI | GATC | 7 cut(s) | 74, 146, 193, 990, 1073, 1294, 1438 |
| SchI | GAGTC | 4 cut(s) | 211, 466, 763, 863 |
| ScrFI | CCNGG | 6 cut(s) | 199, 417, 442, 656, 680, 1621 |
| SduI | GDGCHC | 4 cut(s) | 1011, 1306, 1321, 1584 |
| SfaNI | GCATC | 4 cut(s) | 472, 643, 1056, 1579 |
| SfcI | CTRYAG | 2 cut(s) | 452, 1442 |
| SfoI | GGCGCC | 1 cut(s) | 1198 |
| Sfr274I | CTCGAG | 2 cut(s) | 668, 1499 |
| SinI | GGWCC | 7 cut(s) | 124, 156, 419, 445, 469, 492, 1392 |
| SlaI | CTCGAG | 2 cut(s) | 668, 1499 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 764, 780, 1052, 1191, 1221, 1587 |
| SmlI | CTYRAG | 4 cut(s) | 638, 668, 705, 1499 |
| SmoI | CTYRAG | 4 cut(s) | 638, 668, 705, 1499 |
| SphI | GCATGC | 1 cut(s) | 1477 |
| Sse9I | AATT | 8 cut(s) | 9, 116, 319, 330, 566, 977, 1066, 1105 |
| SsiI | CCGC | 8 cut(s) | 80, 628, 1117, 1379, 1382, 1385, 1532, 1577 |
| SspDI | GGCGCC | 1 cut(s) | 1196 |
| SspI | AATATT | 1 cut(s) | 288 |
| SspMI | CTAG | 4 cut(s) | 56, 675, 822, 887 |
| SstI | GAGCTC | 2 cut(s) | 1011, 1321 |
| StyD4I | CCNGG | 6 cut(s) | 197, 415, 440, 654, 678, 1619 |
| StyI | CCWWGG | 1 cut(s) | 1631 |
| TaaI | ACNGT | 5 cut(s) | 516, 694, 1335, 1446, 1545 |
| TaiI | ACGT | 6 cut(s) | 508, 864, 1156, 1179, 1272, 1518 |
| TaqI | TCGA | 6 cut(s) | 46, 192, 669, 843, 1279, 1500 |
| TaqII | GACCGA | 1 cut(s) | 555 |
| TasI | AATT | 8 cut(s) | 9, 116, 319, 330, 566, 977, 1066, 1105 |
| TauI | GCSGC | 4 cut(s) | 83, 1382, 1385, 1534 |
| TfiI | GAWTC | 6 cut(s) | 43, 362, 543, 651, 664, 1100 |
| Tru1I | TTAA | 2 cut(s) | 963, 971 |
| Tru9I | TTAA | 2 cut(s) | 963, 971 |
| TscAI | CASTG | 4 cut(s) | 430, 456, 481, 614 |
| TseFI | GTSAC | 1 cut(s) | 866 |
| TseI | GCWGC | 2 cut(s) | 52, 728 |
| Tsp45I | GTSAC | 1 cut(s) | 866 |
| TspDTI | ATGAA | 5 cut(s) | 821, 825, 989, 992, 1037 |
| TspGWI | ACGGA | 5 cut(s) | 139, 505, 854, 1003, 1066 |
| TspRI | CASTG | 4 cut(s) | 430, 456, 481, 614 |
| VneI | GTGCAC | 1 cut(s) | 1580 |
| VpaK11BI | GGWCC | 7 cut(s) | 124, 156, 419, 445, 469, 492, 1392 |
| XapI | RAATTY | 4 cut(s) | 9, 116, 330, 977 |
| XceI | RCATGY | 2 cut(s) | 688, 1477 |
| XhoI | CTCGAG | 2 cut(s) | 668, 1499 |
| XmnI | GAANNNNTTC | 2 cut(s) | 348, 954 |
| XspI | CTAG | 4 cut(s) | 56, 675, 822, 887 |