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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AccII | CGCG | 2 cut(s) | 39, 87 |
| AciI | CCGC | 4 cut(s) | 39, 87, 272, 554 |
| AfaI | GTAC | 1 cut(s) | 120 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 50, 121 |
| AgsI | TTSAA | 1 cut(s) | 569 |
| AjiI | CACGTC | 3 cut(s) | 162, 198, 329 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 481, 513 |
| AluBI | AGCT | 1 cut(s) | 348 |
| AluI | AGCT | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 485 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 155 |
| Ama87I | CYCGRG | 1 cut(s) | 312 |
| AoxI | GGCC | 6 cut(s) | 40, 64, 88, 111, 137, 286 |
| ApeKI | GCWGC | 2 cut(s) | 128, 372 |
| AspLEI | GCGC | 1 cut(s) | 194 |
| AspS9I | GGNCC | 7 cut(s) | 41, 65, 89, 107, 112, 138, 186 |
| AsuHPI | GGTGA | 1 cut(s) | 404 |
| AvaI | CYCGRG | 1 cut(s) | 312 |
| AvaII | GGWCC | 2 cut(s) | 107, 186 |
| BbsI | GAAGAC | 1 cut(s) | 466 |
| BbvI | GCAGC | 2 cut(s) | 140, 384 |
| BccI | CCATC | 4 cut(s) | 180, 285, 408, 535 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| BcoDI | GTCTC | 1 cut(s) | 485 |
| BfaI | CTAG | 3 cut(s) | 319, 531, 590 |
| BfoI | RGCGCY | 1 cut(s) | 195 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 381 |
| BisI | GCNGC | 4 cut(s) | 40, 88, 129, 373 |
| BlsI | GCNGC | 4 cut(s) | 41, 89, 130, 374 |
| BmcAI | AGTACT | 1 cut(s) | 120 |
| Bme1390I | CCNGG | 1 cut(s) | 300 |
| Bme18I | GGWCC | 2 cut(s) | 107, 186 |
| BmeT110I | CYCGRG | 1 cut(s) | 312 |
| BmgBI | CACGTC | 3 cut(s) | 162, 198, 329 |
| BmgT120I | GGNCC | 7 cut(s) | 41, 65, 89, 107, 112, 138, 186 |
| BmrFI | CCNGG | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 287 |
| BpiI | GAAGAC | 1 cut(s) | 466 |
| BpmI | CTGGAG | 1 cut(s) | 420 |
| BpuEI | CTTGAG | 2 cut(s) | 267, 334 |
| BsaI | GGTCTC | 1 cut(s) | 485 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 50, 121 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| Bse1I | ACTGG | 2 cut(s) | 126, 437 |
| Bse3DI | GCAATG | 1 cut(s) | 240 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseGI | GGATG | 2 cut(s) | 214, 403 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 50, 121 |
| BseMI | GCAATG | 1 cut(s) | 240 |
| BseNI | ACTGG | 2 cut(s) | 126, 437 |
| BseRI | GAGGAG | 1 cut(s) | 75 |
| BseXI | GCAGC | 2 cut(s) | 140, 384 |
| Bsh1236I | CGCG | 2 cut(s) | 39, 87 |
| BshFI | GGCC | 6 cut(s) | 42, 66, 90, 113, 139, 288 |
| BsiHKCI | CYCGRG | 1 cut(s) | 312 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 50, 121 |
| BsmAI | GTCTC | 1 cut(s) | 485 |
| BsnI | GGCC | 6 cut(s) | 42, 66, 90, 113, 139, 288 |
| Bso31I | GGTCTC | 1 cut(s) | 485 |
| BsoBI | CYCGRG | 1 cut(s) | 312 |
| BspACI | CCGC | 4 cut(s) | 39, 87, 272, 554 |
| BspANI | GGCC | 6 cut(s) | 42, 66, 90, 113, 139, 288 |
| BspFNI | CGCG | 2 cut(s) | 39, 87 |
| BspTNI | GGTCTC | 1 cut(s) | 485 |
| BsrDI | GCAATG | 1 cut(s) | 240 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BsrI | ACTGG | 2 cut(s) | 126, 437 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 2 cut(s) | 276, 346 |
| BstDEI | CTNAG | 1 cut(s) | 377 |
| BstF5I | GGATG | 2 cut(s) | 214, 403 |
| BstFNI | CGCG | 2 cut(s) | 39, 87 |
| BstH2I | RGCGCY | 1 cut(s) | 195 |
| BstHHI | GCGC | 1 cut(s) | 194 |
| BstMAI | GTCTC | 1 cut(s) | 485 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 200, 369, 381 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstSCI | CCNGG | 1 cut(s) | 298 |
| BstUI | CGCG | 2 cut(s) | 39, 87 |
| BstV1I | GCAGC | 2 cut(s) | 140, 384 |
| BstV2I | GAAGAC | 1 cut(s) | 466 |
| BsuRI | GGCC | 6 cut(s) | 42, 66, 90, 113, 139, 288 |
| BtrI | CACGTC | 3 cut(s) | 162, 198, 329 |
| BtsCI | GGATG | 2 cut(s) | 214, 403 |
| BtsI | GCAGTG | 2 cut(s) | 141, 188 |
| BtsIMutI | CAGTG | 2 cut(s) | 141, 188 |
| Cac8I | GCNNGC | 2 cut(s) | 276, 346 |
| CaiI | CAGNNNCTG | 1 cut(s) | 155 |
| CfoI | GCGC | 1 cut(s) | 194 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 7 cut(s) | 41, 65, 89, 107, 112, 138, 186 |
| CseI | GACGC | 2 cut(s) | 93, 134 |
| Csp6I | GTAC | 1 cut(s) | 119 |
| CviAII | CATG | 1 cut(s) | 510 |
| CviQI | GTAC | 1 cut(s) | 119 |
| DdeI | CTNAG | 1 cut(s) | 377 |
| EciI | GGCGGA | 1 cut(s) | 261 |
| Eco31I | GGTCTC | 1 cut(s) | 485 |
| Eco47I | GGWCC | 2 cut(s) | 107, 186 |
| Eco88I | CYCGRG | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| FaeI | CATG | 1 cut(s) | 513 |
| FaiI | YATR | 7 cut(s) | 248, 306, 421, 423, 442, 450, 511 |
| FatI | CATG | 1 cut(s) | 509 |
| FauNDI | CATATG | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 4 cut(s) | 40, 88, 129, 373 |
| FokI | GGATG | 2 cut(s) | 221, 390 |
| Fsp4HI | GCNGC | 4 cut(s) | 40, 88, 129, 373 |
| FspBI | CTAG | 3 cut(s) | 319, 531, 590 |
| GlaI | GCGC | 1 cut(s) | 193 |
| GluI | GCNGC | 4 cut(s) | 40, 88, 129, 373 |
| GsuI | CTGGAG | 1 cut(s) | 420 |
| HaeII | RGCGCY | 1 cut(s) | 195 |
| HaeIII | GGCC | 6 cut(s) | 42, 66, 90, 113, 139, 288 |
| HapII | CCGG | 1 cut(s) | 110 |
| HgaI | GACGC | 2 cut(s) | 93, 134 |
| HhaI | GCGC | 1 cut(s) | 194 |
| Hin1II | CATG | 1 cut(s) | 513 |
| Hin6I | GCGC | 1 cut(s) | 192 |
| HinP1I | GCGC | 1 cut(s) | 192 |
| HincII | GTYRAC | 1 cut(s) | 165 |
| HindII | GTYRAC | 1 cut(s) | 165 |
| HinfI | GANTC | 5 cut(s) | 34, 295, 308, 413, 513 |
| HpaII | CCGG | 1 cut(s) | 110 |
| HphI | GGTGA | 1 cut(s) | 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 165, 186 |
| Hpy188III | TCNNGA | 5 cut(s) | 264, 312, 351, 525, 579 |
| Hpy8I | GTNNAC | 2 cut(s) | 165, 186 |
| HpyAV | CCTTC | 1 cut(s) | 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 338 |
| HpyCH4IV | ACGT | 4 cut(s) | 161, 197, 328, 505 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 200, 369, 381 |
| HpyF3I | CTNAG | 1 cut(s) | 377 |
| HpySE526I | ACGT | 4 cut(s) | 161, 197, 328, 505 |
| Hsp92II | CATG | 1 cut(s) | 513 |
| HspAI | GCGC | 1 cut(s) | 192 |
| LmnI | GCTCC | 1 cut(s) | 439 |
| Lsp1109I | GCAGC | 2 cut(s) | 140, 384 |
| LweI | GCATC | 1 cut(s) | 287 |
| MaeI | CTAG | 3 cut(s) | 319, 531, 590 |
| MaeII | ACGT | 4 cut(s) | 161, 197, 328, 505 |
| MaeIII | GTNAC | 1 cut(s) | 213 |
| MboII | GAAGA | 5 cut(s) | 87, 111, 468, 471, 501 |
| MluCI | AATT | 2 cut(s) | 225, 428 |
| MlyI | GAGTC | 3 cut(s) | 28, 407, 507 |
| MnlI | CCTC | 6 cut(s) | 44, 53, 56, 129, 374, 561 |
| MslI | CAYNNNNRTG | 1 cut(s) | 408 |
| MspI | CCGG | 1 cut(s) | 110 |
| MspR9I | CCNGG | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| MvnI | CGCG | 2 cut(s) | 39, 87 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 200, 369, 381 |
| NdeI | CATATG | 1 cut(s) | 421 |
| NlaIII | CATG | 1 cut(s) | 513 |
| PaeR7I | CTCGAG | 1 cut(s) | 312 |
| PfeI | GAWTC | 2 cut(s) | 295, 308 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PfoI | TCCNGGA | 1 cut(s) | 298 |
| PkrI | GCNGC | 4 cut(s) | 41, 89, 130, 374 |
| PleI | GAGTC | 3 cut(s) | 28, 407, 507 |
| PpsI | GAGTC | 3 cut(s) | 28, 407, 507 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PspPI | GGNCC | 7 cut(s) | 41, 65, 89, 107, 112, 138, 186 |
| PstNI | CAGNNNCTG | 1 cut(s) | 155 |
| RsaI | GTAC | 1 cut(s) | 120 |
| RsaNI | GTAC | 1 cut(s) | 119 |
| RseI | CAYNNNNRTG | 1 cut(s) | 408 |
| SatI | GCNGC | 4 cut(s) | 40, 88, 129, 373 |
| Sau96I | GGNCC | 7 cut(s) | 41, 65, 89, 107, 112, 138, 186 |
| ScaI | AGTACT | 1 cut(s) | 120 |
| SchI | GAGTC | 3 cut(s) | 28, 407, 507 |
| ScrFI | CCNGG | 1 cut(s) | 300 |
| SetI | ASST | 9 cut(s) | 164, 200, 220, 258, 331, 350, 394, 508, 532 |
| SfaNI | GCATC | 1 cut(s) | 287 |
| Sfr274I | CTCGAG | 1 cut(s) | 312 |
| SinI | GGWCC | 2 cut(s) | 107, 186 |
| SlaI | CTCGAG | 1 cut(s) | 312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 408 |
| SmlI | CTYRAG | 3 cut(s) | 282, 312, 349 |
| SmoI | CTYRAG | 3 cut(s) | 282, 312, 349 |
| Sse9I | AATT | 2 cut(s) | 225, 428 |
| SsiI | CCGC | 4 cut(s) | 39, 87, 272, 554 |
| SspMI | CTAG | 3 cut(s) | 319, 531, 590 |
| StyD4I | CCNGG | 1 cut(s) | 298 |
| TaaI | ACNGT | 1 cut(s) | 338 |
| TaiI | ACGT | 4 cut(s) | 164, 200, 331, 508 |
| TaqI | TCGA | 2 cut(s) | 313, 487 |
| TasI | AATT | 2 cut(s) | 225, 428 |
| TatI | WGTACW | 1 cut(s) | 118 |
| TauI | GCSGC | 2 cut(s) | 42, 90 |
| TfiI | GAWTC | 2 cut(s) | 295, 308 |
| TscAI | CASTG | 2 cut(s) | 148, 188 |
| TseI | GCWGC | 2 cut(s) | 128, 372 |
| TspDTI | ATGAA | 3 cut(s) | 229, 465, 469 |
| TspRI | CASTG | 2 cut(s) | 148, 188 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 2 cut(s) | 107, 186 |
| XhoI | CTCGAG | 1 cut(s) | 312 |
| XspI | CTAG | 3 cut(s) | 319, 531, 590 |
| ZrmI | AGTACT | 1 cut(s) | 120 |