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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 555, 600 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 663 |
| Acc36I | ACCTGC | 1 cut(s) | 690 |
| AccB1I | GGYRCC | 2 cut(s) | 91, 776 |
| AccBSI | CCGCTC | 1 cut(s) | 628 |
| AccII | CGCG | 2 cut(s) | 229, 768 |
| AciI | CCGC | 6 cut(s) | 457, 628, 697, 710, 768, 1047 |
| AclWI | GGATC | 3 cut(s) | 111, 488, 877 |
| AcuI | CTGAAG | 1 cut(s) | 483 |
| AcvI | CACGTG | 2 cut(s) | 719, 737 |
| AcyI | GRCGYC | 2 cut(s) | 160, 777 |
| AdeI | CACNNNGTG | 2 cut(s) | 722, 818 |
| AfaI | GTAC | 2 cut(s) | 962, 1037 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 738, 767 |
| AflIII | ACRYGT | 3 cut(s) | 716, 734, 852 |
| AgsI | TTSAA | 8 cut(s) | 66, 277, 284, 313, 561, 889, 921, 1018 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 380 |
| AjnI | CCWGG | 2 cut(s) | 87, 760 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 7 cut(s) | 217, 341, 397, 499, 521, 917, 1022 |
| AluI | AGCT | 7 cut(s) | 217, 341, 397, 499, 521, 917, 1022 |
| Alw21I | GWGCWC | 1 cut(s) | 823 |
| Alw26I | GTCTC | 1 cut(s) | 984 |
| Alw44I | GTGCAC | 1 cut(s) | 819 |
| AlwI | GGATC | 3 cut(s) | 111, 488, 877 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 437 |
| ApaLI | GTGCAC | 1 cut(s) | 819 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspA2I | CCTAGG | 1 cut(s) | 800 |
| AspLEI | GCGC | 3 cut(s) | 229, 621, 779 |
| AspS9I | GGNCC | 3 cut(s) | 665, 794, 940 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 1 cut(s) | 994 |
| AvaII | GGWCC | 3 cut(s) | 665, 794, 940 |
| AvrII | CCTAGG | 1 cut(s) | 800 |
| AxyI | CCTNAGG | 1 cut(s) | 944 |
| BaeGI | GKGCMC | 1 cut(s) | 823 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 426, 459 |
| BanI | GGYRCC | 2 cut(s) | 91, 776 |
| BauI | CACGAG | 1 cut(s) | 484 |
| BbrPI | CACGTG | 2 cut(s) | 719, 737 |
| Bbv12I | GWGCWC | 1 cut(s) | 823 |
| BccI | CCATC | 2 cut(s) | 425, 1005 |
| BciT130I | CCWGG | 2 cut(s) | 89, 762 |
| BciVI | GTATCC | 2 cut(s) | 706, 767 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 984 |
| BfaI | CTAG | 2 cut(s) | 801, 914 |
| BfmI | CTRYAG | 1 cut(s) | 516 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BfuAI | ACCTGC | 1 cut(s) | 690 |
| BfuI | GTATCC | 2 cut(s) | 706, 767 |
| BisI | GCNGC | 1 cut(s) | 1047 |
| BlnI | CCTAGG | 1 cut(s) | 800 |
| BlsI | GCNGC | 1 cut(s) | 1048 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 101, 762 |
| Bme18I | GGWCC | 3 cut(s) | 665, 794, 940 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 3 cut(s) | 665, 794, 940 |
| BmiI | GGNNCC | 5 cut(s) | 93, 632, 666, 778, 941 |
| BmrFI | CCNGG | 3 cut(s) | 89, 101, 762 |
| BmsI | GCATC | 3 cut(s) | 144, 196, 1033 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| Bsa29I | ATCGAT | 1 cut(s) | 862 |
| BsaAI | YACGTR | 2 cut(s) | 719, 737 |
| BsaBI | GATNNNNATC | 1 cut(s) | 868 |
| BsaHI | GRCGYC | 2 cut(s) | 160, 777 |
| BsaJI | CCNNGG | 3 cut(s) | 760, 780, 800 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 179, 209 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 738, 767 |
| Bse1I | ACTGG | 1 cut(s) | 478 |
| Bse21I | CCTNAGG | 1 cut(s) | 944 |
| Bse3DI | GCAATG | 2 cut(s) | 733, 899 |
| Bse8I | GATNNNNATC | 1 cut(s) | 868 |
| BseBI | CCWGG | 2 cut(s) | 89, 762 |
| BseCI | ATCGAT | 1 cut(s) | 862 |
| BseDI | CCNNGG | 3 cut(s) | 760, 780, 800 |
| BseGI | GGATG | 3 cut(s) | 211, 993, 1048 |
| BseJI | GATNNNNATC | 1 cut(s) | 868 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 738, 767 |
| BseMI | GCAATG | 2 cut(s) | 733, 899 |
| BseMII | CTCAG | 3 cut(s) | 513, 839, 935 |
| BseNI | ACTGG | 1 cut(s) | 478 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 1 cut(s) | 823 |
| Bsh1236I | CGCG | 2 cut(s) | 229, 768 |
| BshNI | GGYRCC | 2 cut(s) | 91, 776 |
| BshVI | ATCGAT | 1 cut(s) | 862 |
| BsiHKAI | GWGCWC | 1 cut(s) | 823 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslFI | GGGAC | 2 cut(s) | 669, 953 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 738, 767 |
| BsmAI | GTCTC | 1 cut(s) | 984 |
| BsmFI | GGGAC | 2 cut(s) | 669, 953 |
| Bsp1286I | GDGCHC | 1 cut(s) | 823 |
| Bsp1407I | TGTACA | 1 cut(s) | 1035 |
| Bsp143I | GATC | 4 cut(s) | 103, 198, 480, 869 |
| Bsp19I | CCATGG | 1 cut(s) | 780 |
| BspACI | CCGC | 6 cut(s) | 457, 628, 697, 710, 768, 1047 |
| BspCNI | CTCAG | 3 cut(s) | 514, 838, 936 |
| BspDI | ATCGAT | 1 cut(s) | 862 |
| BspFNI | CGCG | 2 cut(s) | 229, 768 |
| BspHI | TCATGA | 1 cut(s) | 586 |
| BspLI | GGNNCC | 5 cut(s) | 93, 632, 666, 778, 941 |
| BspMI | ACCTGC | 1 cut(s) | 690 |
| BspPI | GGATC | 3 cut(s) | 111, 488, 877 |
| BspQI | GCTCTTC | 2 cut(s) | 228, 348 |
| BspT107I | GGYRCC | 2 cut(s) | 91, 776 |
| BsrBI | CCGCTC | 1 cut(s) | 628 |
| BsrDI | GCAATG | 2 cut(s) | 733, 899 |
| BsrGI | TGTACA | 1 cut(s) | 1035 |
| BsrI | ACTGG | 1 cut(s) | 478 |
| BssECI | CCNNGG | 3 cut(s) | 760, 780, 800 |
| BssMI | GATC | 4 cut(s) | 103, 198, 480, 869 |
| BssNI | GRCGYC | 2 cut(s) | 160, 777 |
| BssSI | CACGAG | 1 cut(s) | 484 |
| BssT1I | CCWWGG | 2 cut(s) | 780, 800 |
| Bst2BI | CACGAG | 1 cut(s) | 484 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 762 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 439 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 348 |
| BstACI | GRCGYC | 2 cut(s) | 160, 777 |
| BstAUI | TGTACA | 1 cut(s) | 1035 |
| BstBAI | YACGTR | 2 cut(s) | 719, 737 |
| BstC8I | GCNNGC | 2 cut(s) | 904, 908 |
| BstDEI | CTNAG | 4 cut(s) | 522, 636, 825, 944 |
| BstDSI | CCRYGG | 1 cut(s) | 780 |
| BstEII | GGTNACC | 1 cut(s) | 37 |
| BstF5I | GGATG | 3 cut(s) | 211, 993, 1048 |
| BstFNI | CGCG | 2 cut(s) | 229, 768 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 3 cut(s) | 229, 621, 779 |
| BstKTI | GATC | 4 cut(s) | 106, 201, 483, 872 |
| BstMAI | GTCTC | 1 cut(s) | 984 |
| BstMBI | GATC | 4 cut(s) | 103, 198, 480, 869 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 235, 625, 774, 903 |
| BstNI | CCWGG | 2 cut(s) | 89, 762 |
| BstNSI | RCATGY | 1 cut(s) | 856 |
| BstPI | GGTNACC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 3 cut(s) | 87, 99, 760 |
| BstSFI | CTRYAG | 1 cut(s) | 516 |
| BstSLI | GKGCMC | 1 cut(s) | 823 |
| BstUI | CGCG | 2 cut(s) | 229, 768 |
| Bsu15I | ATCGAT | 1 cut(s) | 862 |
| Bsu36I | CCTNAGG | 1 cut(s) | 944 |
| BsuI | GTATCC | 2 cut(s) | 706, 767 |
| BsuTUI | ATCGAT | 1 cut(s) | 862 |
| BtgI | CCRYGG | 1 cut(s) | 780 |
| BtsCI | GGATG | 3 cut(s) | 211, 993, 1048 |
| BtsIMutI | CAGTG | 2 cut(s) | 435, 459 |
| BveI | ACCTGC | 1 cut(s) | 690 |
| Cac8I | GCNNGC | 2 cut(s) | 904, 908 |
| CaiI | CAGNNNCTG | 1 cut(s) | 437 |
| CciI | TCATGA | 1 cut(s) | 586 |
| CfoI | GCGC | 3 cut(s) | 229, 621, 779 |
| Cfr13I | GGNCC | 3 cut(s) | 665, 794, 940 |
| ClaI | ATCGAT | 1 cut(s) | 862 |
| CseI | GACGC | 1 cut(s) | 168 |
| Csp6I | GTAC | 2 cut(s) | 961, 1036 |
| CviAII | CATG | 7 cut(s) | 358, 530, 587, 752, 781, 853, 928 |
| CviQI | GTAC | 2 cut(s) | 961, 1036 |
| DdeI | CTNAG | 4 cut(s) | 522, 636, 825, 944 |
| DinI | GGCGCC | 1 cut(s) | 778 |
| DpnI | GATC | 4 cut(s) | 105, 200, 482, 871 |
| DpnII | GATC | 4 cut(s) | 103, 198, 480, 869 |
| DraIII | CACNNNGTG | 2 cut(s) | 722, 818 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 663 |
| DriI | GACNNNNNGTC | 1 cut(s) | 380 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 663 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 2 cut(s) | 228, 348 |
| Eco130I | CCWWGG | 2 cut(s) | 780, 800 |
| Eco47I | GGWCC | 3 cut(s) | 665, 794, 940 |
| Eco57I | CTGAAG | 1 cut(s) | 483 |
| Eco72I | CACGTG | 2 cut(s) | 719, 737 |
| Eco81I | CCTNAGG | 1 cut(s) | 944 |
| Eco91I | GGTNACC | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 1 cut(s) | 940 |
| EcoO65I | GGTNACC | 1 cut(s) | 37 |
| EcoRII | CCWGG | 2 cut(s) | 87, 760 |
| EcoT14I | CCWWGG | 2 cut(s) | 780, 800 |
| EgeI | GGCGCC | 1 cut(s) | 778 |
| EheI | GGCGCC | 1 cut(s) | 778 |
| ErhI | CCWWGG | 2 cut(s) | 780, 800 |
| FaeI | CATG | 7 cut(s) | 361, 533, 590, 755, 784, 856, 931 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 948, 980 |
| FaqI | GGGAC | 2 cut(s) | 669, 953 |
| FatI | CATG | 7 cut(s) | 357, 529, 586, 751, 780, 852, 927 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 1 cut(s) | 1047 |
| FokI | GGATG | 3 cut(s) | 218, 980, 1055 |
| Fsp4HI | GCNGC | 1 cut(s) | 1047 |
| FspBI | CTAG | 2 cut(s) | 801, 914 |
| GlaI | GCGC | 3 cut(s) | 228, 620, 778 |
| GluI | GCNGC | 1 cut(s) | 1047 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HapII | CCGG | 1 cut(s) | 101 |
| HgaI | GACGC | 1 cut(s) | 168 |
| HhaI | GCGC | 3 cut(s) | 229, 621, 779 |
| Hin1I | GRCGYC | 2 cut(s) | 160, 777 |
| Hin1II | CATG | 7 cut(s) | 361, 533, 590, 755, 784, 856, 931 |
| Hin6I | GCGC | 3 cut(s) | 227, 619, 777 |
| HinP1I | GCGC | 3 cut(s) | 227, 619, 777 |
| HinfI | GANTC | 2 cut(s) | 8, 257 |
| HpaII | CCGG | 1 cut(s) | 101 |
| HphI | GGTGA | 1 cut(s) | 994 |
| Hpy166II | GTNNAC | 5 cut(s) | 374, 749, 821, 961, 1036 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 337 |
| Hpy188III | TCNNGA | 4 cut(s) | 151, 484, 587, 921 |
| Hpy8I | GTNNAC | 5 cut(s) | 374, 749, 821, 961, 1036 |
| Hpy99I | CGWCG | 1 cut(s) | 162 |
| HpyAV | CCTTC | 2 cut(s) | 271, 683 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 439 |
| HpyCH4IV | ACGT | 4 cut(s) | 658, 718, 736, 817 |
| HpyCH4V | TGCA | 4 cut(s) | 209, 605, 821, 897 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 235, 625, 774, 903 |
| HpyF3I | CTNAG | 4 cut(s) | 522, 636, 825, 944 |
| HpySE526I | ACGT | 4 cut(s) | 658, 718, 736, 817 |
| Hsp92I | GRCGYC | 2 cut(s) | 160, 777 |
| Hsp92II | CATG | 7 cut(s) | 361, 533, 590, 755, 784, 856, 931 |
| HspAI | GCGC | 3 cut(s) | 227, 619, 777 |
| KasI | GGCGCC | 1 cut(s) | 776 |
| Kzo9I | GATC | 4 cut(s) | 103, 198, 480, 869 |
| LguI | GCTCTTC | 2 cut(s) | 228, 348 |
| LmnI | GCTCC | 2 cut(s) | 625, 949 |
| LweI | GCATC | 3 cut(s) | 144, 196, 1033 |
| MaeI | CTAG | 2 cut(s) | 801, 914 |
| MaeII | ACGT | 4 cut(s) | 658, 718, 736, 817 |
| MaeIII | GTNAC | 2 cut(s) | 37, 382 |
| MalI | GATC | 4 cut(s) | 105, 200, 482, 871 |
| MbiI | CCGCTC | 1 cut(s) | 628 |
| MboI | GATC | 4 cut(s) | 103, 198, 480, 869 |
| MboII | GAAGA | 6 cut(s) | 245, 335, 412, 983, 986, 989 |
| MhlI | GDGCHC | 1 cut(s) | 823 |
| MluCI | AATT | 6 cut(s) | 182, 331, 399, 550, 556, 595 |
| Mly113I | GGCGCC | 1 cut(s) | 777 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 2 cut(s) | 77, 830 |
| MslI | CAYNNNNRTG | 2 cut(s) | 542, 864 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 3 cut(s) | 89, 101, 762 |
| MvaI | CCWGG | 2 cut(s) | 89, 762 |
| MvnI | CGCG | 2 cut(s) | 229, 768 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 235, 625, 774, 903 |
| NarI | GGCGCC | 1 cut(s) | 777 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NcoI | CCATGG | 1 cut(s) | 780 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 4 cut(s) | 103, 198, 480, 869 |
| NlaIII | CATG | 7 cut(s) | 361, 533, 590, 755, 784, 856, 931 |
| NlaIV | GGNNCC | 5 cut(s) | 93, 632, 666, 778, 941 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| NspI | RCATGY | 1 cut(s) | 856 |
| PagI | TCATGA | 1 cut(s) | 586 |
| PciI | ACATGT | 1 cut(s) | 852 |
| PciSI | GCTCTTC | 2 cut(s) | 228, 348 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 1 cut(s) | 1048 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PluTI | GGCGCC | 1 cut(s) | 780 |
| PmaCI | CACGTG | 2 cut(s) | 719, 737 |
| PmlI | CACGTG | 2 cut(s) | 719, 737 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Ppu21I | YACGTR | 2 cut(s) | 719, 737 |
| PpuMI | RGGWCCY | 1 cut(s) | 940 |
| PscI | ACATGT | 1 cut(s) | 852 |
| PsiI | TTATAA | 2 cut(s) | 555, 600 |
| Psp5II | RGGWCCY | 1 cut(s) | 940 |
| Psp6I | CCWGG | 2 cut(s) | 87, 760 |
| PspCI | CACGTG | 2 cut(s) | 719, 737 |
| PspEI | GGTNACC | 1 cut(s) | 37 |
| PspGI | CCWGG | 2 cut(s) | 87, 760 |
| PspN4I | GGNNCC | 5 cut(s) | 93, 632, 666, 778, 941 |
| PspPI | GGNCC | 3 cut(s) | 665, 794, 940 |
| PspPPI | RGGWCCY | 1 cut(s) | 940 |
| PstNI | CAGNNNCTG | 1 cut(s) | 437 |
| RsaI | GTAC | 2 cut(s) | 962, 1037 |
| RsaNI | GTAC | 2 cut(s) | 961, 1036 |
| RseI | CAYNNNNRTG | 2 cut(s) | 542, 864 |
| SapI | GCTCTTC | 2 cut(s) | 228, 348 |
| SaqAI | TTAA | 2 cut(s) | 77, 830 |
| SatI | GCNGC | 1 cut(s) | 1047 |
| Sau3AI | GATC | 4 cut(s) | 103, 198, 480, 869 |
| Sau96I | GGNCC | 3 cut(s) | 665, 794, 940 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 3 cut(s) | 89, 101, 762 |
| SduI | GDGCHC | 1 cut(s) | 823 |
| SfaNI | GCATC | 3 cut(s) | 144, 196, 1033 |
| SfcI | CTRYAG | 1 cut(s) | 516 |
| SfoI | GGCGCC | 1 cut(s) | 778 |
| SinI | GGWCC | 3 cut(s) | 665, 794, 940 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 542, 864 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| Sse9I | AATT | 6 cut(s) | 182, 331, 399, 550, 556, 595 |
| SsiI | CCGC | 6 cut(s) | 457, 628, 697, 710, 768, 1047 |
| SspDI | GGCGCC | 1 cut(s) | 776 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 2 cut(s) | 801, 914 |
| StyD4I | CCNGG | 3 cut(s) | 87, 99, 760 |
| StyI | CCWWGG | 2 cut(s) | 780, 800 |
| TaaI | ACNGT | 2 cut(s) | 32, 439 |
| TaiI | ACGT | 4 cut(s) | 661, 721, 739, 820 |
| TaqI | TCGA | 2 cut(s) | 197, 862 |
| TasI | AATT | 6 cut(s) | 182, 331, 399, 550, 556, 595 |
| TatI | WGTACW | 1 cut(s) | 1035 |
| TauI | GCSGC | 1 cut(s) | 1049 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 2 cut(s) | 77, 830 |
| Tru9I | TTAA | 2 cut(s) | 77, 830 |
| TscAI | CASTG | 2 cut(s) | 442, 466 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 4 cut(s) | 482, 575, 702, 1044 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| TspRI | CASTG | 2 cut(s) | 442, 466 |
| VneI | GTGCAC | 1 cut(s) | 819 |
| VpaK11BI | GGWCC | 3 cut(s) | 665, 794, 940 |
| XceI | RCATGY | 1 cut(s) | 856 |
| XmaJI | CCTAGG | 1 cut(s) | 800 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 2 cut(s) | 801, 914 |