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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 528, 573 |
| AccB1I | GGYRCC | 3 cut(s) | 121, 770, 791 |
| AccBSI | CCGCTC | 1 cut(s) | 601 |
| AciI | CCGC | 3 cut(s) | 430, 601, 683 |
| AclWI | GGATC | 2 cut(s) | 141, 461 |
| AcuI | CTGAAG | 1 cut(s) | 456 |
| AcyI | GRCGYC | 2 cut(s) | 190, 792 |
| AdeI | CACNNNGTG | 1 cut(s) | 821 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| AgsI | TTSAA | 4 cut(s) | 96, 257, 286, 534 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 353 |
| AjnI | CCWGG | 1 cut(s) | 733 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 429, 461 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 247, 314, 370, 472 |
| AluI | AGCT | 4 cut(s) | 247, 314, 370, 472 |
| Alw21I | GWGCWC | 1 cut(s) | 826 |
| Alw26I | GTCTC | 1 cut(s) | 557 |
| Alw44I | GTGCAC | 1 cut(s) | 822 |
| AlwI | GGATC | 2 cut(s) | 141, 461 |
| AoxI | GGCC | 1 cut(s) | 536 |
| ApaLI | GTGCAC | 1 cut(s) | 822 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 315 |
| AspA2I | CCTAGG | 1 cut(s) | 803 |
| AspLEI | GCGC | 4 cut(s) | 273, 594, 752, 794 |
| AspS9I | GGNCC | 3 cut(s) | 261, 537, 638 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvaII | GGWCC | 2 cut(s) | 261, 638 |
| AvrII | CCTAGG | 1 cut(s) | 803 |
| AxyI | CCTNAGG | 1 cut(s) | 671 |
| BaeGI | GKGCMC | 1 cut(s) | 826 |
| BanI | GGYRCC | 3 cut(s) | 121, 770, 791 |
| BauI | CACGAG | 3 cut(s) | 457, 515, 759 |
| Bbv12I | GWGCWC | 1 cut(s) | 826 |
| BciT130I | CCWGG | 1 cut(s) | 735 |
| BciVI | GTATCC | 2 cut(s) | 679, 740 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 557 |
| BfaI | CTAG | 2 cut(s) | 15, 804 |
| BfmI | CTRYAG | 2 cut(s) | 323, 489 |
| BfoI | RGCGCY | 1 cut(s) | 795 |
| BfuI | GTATCC | 2 cut(s) | 679, 740 |
| BlnI | CCTAGG | 1 cut(s) | 803 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 735 |
| Bme18I | GGWCC | 2 cut(s) | 261, 638 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 3 cut(s) | 261, 537, 638 |
| BmiI | GGNNCC | 4 cut(s) | 123, 639, 772, 793 |
| BmrFI | CCNGG | 2 cut(s) | 131, 735 |
| BmsI | GCATC | 2 cut(s) | 174, 226 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 590, 622 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 792 |
| BsaJI | CCNNGG | 3 cut(s) | 733, 774, 803 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 706, 736 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| Bse21I | CCTNAGG | 1 cut(s) | 671 |
| Bse3DI | GCAATG | 2 cut(s) | 706, 759 |
| BseBI | CCWGG | 1 cut(s) | 735 |
| BseDI | CCNNGG | 3 cut(s) | 733, 774, 803 |
| BseGI | GGATG | 2 cut(s) | 241, 635 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| BseMI | GCAATG | 2 cut(s) | 706, 759 |
| BseMII | CTCAG | 2 cut(s) | 223, 685 |
| BseSI | GKGCMC | 1 cut(s) | 826 |
| BshFI | GGCC | 1 cut(s) | 538 |
| BshNI | GGYRCC | 3 cut(s) | 121, 770, 791 |
| BsiHKAI | GWGCWC | 1 cut(s) | 826 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 336, 587, 588, 658, 711, 740, 805 |
| BsmAI | GTCTC | 1 cut(s) | 557 |
| BsnI | GGCC | 1 cut(s) | 538 |
| Bsp1286I | GDGCHC | 1 cut(s) | 826 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 453 |
| Bsp19I | CCATGG | 1 cut(s) | 774 |
| BspACI | CCGC | 3 cut(s) | 430, 601, 683 |
| BspANI | GGCC | 1 cut(s) | 538 |
| BspCNI | CTCAG | 2 cut(s) | 222, 684 |
| BspHI | TCATGA | 1 cut(s) | 559 |
| BspLI | GGNNCC | 4 cut(s) | 123, 639, 772, 793 |
| BspPI | GGATC | 2 cut(s) | 141, 461 |
| BspQI | GCTCTTC | 1 cut(s) | 321 |
| BspT107I | GGYRCC | 3 cut(s) | 121, 770, 791 |
| BsrBI | CCGCTC | 1 cut(s) | 601 |
| BsrDI | GCAATG | 2 cut(s) | 706, 759 |
| BssECI | CCNNGG | 3 cut(s) | 733, 774, 803 |
| BssMI | GATC | 3 cut(s) | 133, 228, 453 |
| BssNI | GRCGYC | 2 cut(s) | 190, 792 |
| BssSI | CACGAG | 3 cut(s) | 457, 515, 759 |
| BssT1I | CCWWGG | 2 cut(s) | 774, 803 |
| Bst2BI | CACGAG | 3 cut(s) | 457, 515, 759 |
| Bst2UI | CCWGG | 1 cut(s) | 735 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 327 |
| Bst6I | CTCTTC | 1 cut(s) | 321 |
| BstACI | GRCGYC | 2 cut(s) | 190, 792 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 4 cut(s) | 209, 609, 671, 828 |
| BstDSI | CCRYGG | 1 cut(s) | 774 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 635 |
| BstH2I | RGCGCY | 1 cut(s) | 795 |
| BstHHI | GCGC | 4 cut(s) | 273, 594, 752, 794 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 456 |
| BstMAI | GTCTC | 1 cut(s) | 557 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 453 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 598 |
| BstNI | CCWGG | 1 cut(s) | 735 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 129, 733 |
| BstSFI | CTRYAG | 2 cut(s) | 323, 489 |
| BstSLI | GKGCMC | 1 cut(s) | 826 |
| Bsu36I | CCTNAGG | 1 cut(s) | 671 |
| BsuI | GTATCC | 2 cut(s) | 679, 740 |
| BsuRI | GGCC | 1 cut(s) | 538 |
| BtgI | CCRYGG | 1 cut(s) | 774 |
| BtsCI | GGATG | 2 cut(s) | 241, 635 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 1 cut(s) | 559 |
| CfoI | GCGC | 4 cut(s) | 273, 594, 752, 794 |
| Cfr13I | GGNCC | 3 cut(s) | 261, 537, 638 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 8 cut(s) | 31, 164, 331, 503, 560, 710, 775, 782 |
| CviJI | RGCY | 8 cut(s) | 48, 247, 314, 370, 407, 472, 538, 758 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 247, 314, 370, 407, 472, 538, 758 |
| DdeI | CTNAG | 4 cut(s) | 209, 609, 671, 828 |
| DinI | GGCGCC | 1 cut(s) | 793 |
| DpnI | GATC | 3 cut(s) | 135, 230, 455 |
| DpnII | GATC | 3 cut(s) | 133, 228, 453 |
| DraIII | CACNNNGTG | 1 cut(s) | 821 |
| DriI | GACNNNNNGTC | 1 cut(s) | 353 |
| Eam1104I | CTCTTC | 1 cut(s) | 321 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 353 |
| EarI | CTCTTC | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 2 cut(s) | 774, 803 |
| Eco47I | GGWCC | 2 cut(s) | 261, 638 |
| Eco57I | CTGAAG | 1 cut(s) | 456 |
| Eco81I | CCTNAGG | 1 cut(s) | 671 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 733 |
| EcoT14I | CCWWGG | 2 cut(s) | 774, 803 |
| EgeI | GGCGCC | 1 cut(s) | 793 |
| EheI | GGCGCC | 1 cut(s) | 793 |
| ErhI | CCWWGG | 2 cut(s) | 774, 803 |
| FaeI | CATG | 8 cut(s) | 34, 167, 334, 506, 563, 713, 778, 785 |
| FatI | CATG | 8 cut(s) | 30, 163, 330, 502, 559, 709, 774, 781 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FokI | GGATG | 2 cut(s) | 248, 642 |
| FspBI | CTAG | 2 cut(s) | 15, 804 |
| GlaI | GCGC | 4 cut(s) | 272, 593, 751, 793 |
| HaeII | RGCGCY | 1 cut(s) | 795 |
| HaeIII | GGCC | 1 cut(s) | 538 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 4 cut(s) | 273, 594, 752, 794 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 792 |
| Hin1II | CATG | 8 cut(s) | 34, 167, 334, 506, 563, 713, 778, 785 |
| Hin6I | GCGC | 4 cut(s) | 271, 592, 750, 792 |
| HinP1I | GCGC | 4 cut(s) | 271, 592, 750, 792 |
| HinfI | GANTC | 2 cut(s) | 18, 38 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 2 cut(s) | 347, 824 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 310 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 457, 517, 560 |
| Hpy8I | GTNNAC | 2 cut(s) | 347, 824 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 1 cut(s) | 656 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 327 |
| HpyCH4IV | ACGT | 1 cut(s) | 820 |
| HpyCH4V | TGCA | 3 cut(s) | 239, 578, 824 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 598 |
| HpyF3I | CTNAG | 4 cut(s) | 209, 609, 671, 828 |
| HpySE526I | ACGT | 1 cut(s) | 820 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 792 |
| Hsp92II | CATG | 8 cut(s) | 34, 167, 334, 506, 563, 713, 778, 785 |
| HspAI | GCGC | 4 cut(s) | 271, 592, 750, 792 |
| KasI | GGCGCC | 1 cut(s) | 791 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 453 |
| LguI | GCTCTTC | 1 cut(s) | 321 |
| LmnI | GCTCC | 1 cut(s) | 598 |
| LpnPI | CCDG | 6 cut(s) | 104, 144, 366, 658, 720, 747 |
| LweI | GCATC | 2 cut(s) | 174, 226 |
| MaeI | CTAG | 2 cut(s) | 15, 804 |
| MaeII | ACGT | 1 cut(s) | 820 |
| MaeIII | GTNAC | 2 cut(s) | 67, 355 |
| MalI | GATC | 3 cut(s) | 135, 230, 455 |
| MbiI | CCGCTC | 1 cut(s) | 601 |
| MboI | GATC | 3 cut(s) | 133, 228, 453 |
| MboII | GAAGA | 1 cut(s) | 308 |
| MhlI | GDGCHC | 1 cut(s) | 826 |
| MluCI | AATT | 6 cut(s) | 114, 304, 372, 523, 529, 568 |
| Mly113I | GGCGCC | 1 cut(s) | 792 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MmeI | TCCRAC | 1 cut(s) | 427 |
| MroXI | GAANNNNTTC | 1 cut(s) | 315 |
| MslI | CAYNNNNRTG | 1 cut(s) | 786 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 131, 735 |
| MvaI | CCWGG | 1 cut(s) | 735 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 598 |
| NarI | GGCGCC | 1 cut(s) | 792 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 774 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 453 |
| NlaIII | CATG | 8 cut(s) | 34, 167, 334, 506, 563, 713, 778, 785 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 639, 772, 793 |
| NmuCI | GTSAC | 1 cut(s) | 355 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 559 |
| PciSI | GCTCTTC | 1 cut(s) | 321 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 817 |
| PdmI | GAANNNNTTC | 1 cut(s) | 315 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 1 cut(s) | 795 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| PsiI | TTATAA | 2 cut(s) | 528, 573 |
| Psp6I | CCWGG | 1 cut(s) | 733 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 733 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 639, 772, 793 |
| PspPI | GGNCC | 3 cut(s) | 261, 537, 638 |
| RseI | CAYNNNNRTG | 1 cut(s) | 786 |
| SapI | GCTCTTC | 1 cut(s) | 321 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 453 |
| Sau96I | GGNCC | 3 cut(s) | 261, 537, 638 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 131, 735 |
| SduI | GDGCHC | 1 cut(s) | 826 |
| SfaNI | GCATC | 2 cut(s) | 174, 226 |
| SfcI | CTRYAG | 2 cut(s) | 323, 489 |
| SfoI | GGCGCC | 1 cut(s) | 793 |
| SinI | GGWCC | 2 cut(s) | 261, 638 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 786 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 114, 304, 372, 523, 529, 568 |
| SsiI | CCGC | 3 cut(s) | 430, 601, 683 |
| SspDI | GGCGCC | 1 cut(s) | 791 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 2 cut(s) | 15, 804 |
| StyD4I | CCNGG | 2 cut(s) | 129, 733 |
| StyI | CCWWGG | 2 cut(s) | 774, 803 |
| TaaI | ACNGT | 2 cut(s) | 62, 327 |
| TaiI | ACGT | 1 cut(s) | 823 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 6 cut(s) | 114, 304, 372, 523, 529, 568 |
| TscAI | CASTG | 1 cut(s) | 439 |
| TseFI | GTSAC | 1 cut(s) | 355 |
| Tsp45I | GTSAC | 1 cut(s) | 355 |
| TspDTI | ATGAA | 3 cut(s) | 24, 455, 548 |
| TspGWI | ACGGA | 1 cut(s) | 466 |
| TspRI | CASTG | 1 cut(s) | 439 |
| VneI | GTGCAC | 1 cut(s) | 822 |
| VpaK11BI | GGWCC | 2 cut(s) | 261, 638 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 803 |
| XmnI | GAANNNNTTC | 1 cut(s) | 315 |
| XspI | CTAG | 2 cut(s) | 15, 804 |