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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 231 |
| AccB1I | GGYRCC | 2 cut(s) | 186, 344 |
| AccII | CGCG | 1 cut(s) | 171 |
| AciI | CCGC | 1 cut(s) | 486 |
| AclWI | GGATC | 1 cut(s) | 123 |
| AcoI | YGGCCR | 1 cut(s) | 331 |
| AcyI | GRCGYC | 2 cut(s) | 187, 345 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 382 |
| AluBI | AGCT | 3 cut(s) | 64, 467, 518 |
| AluI | AGCT | 3 cut(s) | 64, 467, 518 |
| Alw21I | GWGCWC | 2 cut(s) | 66, 469 |
| AlwI | GGATC | 1 cut(s) | 123 |
| AoxI | GGCC | 1 cut(s) | 331 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 89, 121 |
| AspLEI | GCGC | 3 cut(s) | 173, 189, 347 |
| AspS9I | GGNCC | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 475 |
| AvaII | GGWCC | 1 cut(s) | 233 |
| BaeGI | GKGCMC | 1 cut(s) | 454 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BanI | GGYRCC | 2 cut(s) | 186, 344 |
| BanII | GRGCYC | 2 cut(s) | 66, 469 |
| BauI | CACGAG | 1 cut(s) | 468 |
| Bbv12I | GWGCWC | 2 cut(s) | 66, 469 |
| BccI | CCATC | 1 cut(s) | 372 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 14, 48 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BfaI | CTAG | 2 cut(s) | 152, 554 |
| BfoI | RGCGCY | 2 cut(s) | 190, 348 |
| Bme18I | GGWCC | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 1 cut(s) | 233 |
| BmiI | GGNNCC | 3 cut(s) | 188, 287, 346 |
| Bsa29I | ATCGAT | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 2 cut(s) | 187, 345 |
| BsaJI | CCNNGG | 1 cut(s) | 132 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 182 |
| BseCI | ATCGAT | 1 cut(s) | 24 |
| BseDI | CCNNGG | 1 cut(s) | 132 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 182 |
| BseSI | GKGCMC | 1 cut(s) | 454 |
| Bsh1236I | CGCG | 1 cut(s) | 171 |
| BshFI | GGCC | 1 cut(s) | 333 |
| BshNI | GGYRCC | 2 cut(s) | 186, 344 |
| BshVI | ATCGAT | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 2 cut(s) | 66, 469 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 182 |
| BsnI | GGCC | 1 cut(s) | 333 |
| Bsp1286I | GDGCHC | 3 cut(s) | 66, 454, 469 |
| Bsp143I | GATC | 3 cut(s) | 128, 442, 538 |
| BspACI | CCGC | 1 cut(s) | 486 |
| BspANI | GGCC | 1 cut(s) | 333 |
| BspDI | ATCGAT | 1 cut(s) | 24 |
| BspFNI | CGCG | 1 cut(s) | 171 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 3 cut(s) | 188, 287, 346 |
| BspPI | GGATC | 1 cut(s) | 123 |
| BspT107I | GGYRCC | 2 cut(s) | 186, 344 |
| BssECI | CCNNGG | 1 cut(s) | 132 |
| BssMI | GATC | 3 cut(s) | 128, 442, 538 |
| BssNI | GRCGYC | 2 cut(s) | 187, 345 |
| BssSI | CACGAG | 1 cut(s) | 468 |
| Bst2BI | CACGAG | 1 cut(s) | 468 |
| BstACI | GRCGYC | 2 cut(s) | 187, 345 |
| BstDEI | CTNAG | 3 cut(s) | 9, 209, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 132 |
| BstFNI | CGCG | 1 cut(s) | 171 |
| BstH2I | RGCGCY | 2 cut(s) | 190, 348 |
| BstHHI | GCGC | 3 cut(s) | 173, 189, 347 |
| BstKTI | GATC | 3 cut(s) | 131, 445, 541 |
| BstMBI | GATC | 3 cut(s) | 128, 442, 538 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 193, 383, 494, 515 |
| BstSLI | GKGCMC | 1 cut(s) | 454 |
| BstUI | CGCG | 1 cut(s) | 171 |
| BstX2I | RGATCY | 1 cut(s) | 128 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 341 |
| BstYI | RGATCY | 1 cut(s) | 128 |
| Bsu15I | ATCGAT | 1 cut(s) | 24 |
| BsuRI | GGCC | 1 cut(s) | 333 |
| BsuTUI | ATCGAT | 1 cut(s) | 24 |
| BtgI | CCRYGG | 1 cut(s) | 132 |
| CciI | TCATGA | 1 cut(s) | 58 |
| CfoI | GCGC | 3 cut(s) | 173, 189, 347 |
| Cfr13I | GGNCC | 1 cut(s) | 233 |
| ClaI | ATCGAT | 1 cut(s) | 24 |
| CseI | GACGC | 1 cut(s) | 383 |
| CviAII | CATG | 3 cut(s) | 59, 95, 335 |
| CviJI | RGCY | 6 cut(s) | 64, 196, 333, 363, 467, 518 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 196, 333, 363, 467, 518 |
| DdeI | CTNAG | 3 cut(s) | 9, 209, 357 |
| DinI | GGCGCC | 2 cut(s) | 188, 346 |
| DpnI | GATC | 3 cut(s) | 130, 444, 540 |
| DpnII | GATC | 3 cut(s) | 128, 442, 538 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 231 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 231 |
| EaeI | YGGCCR | 1 cut(s) | 331 |
| Ecl136II | GAGCTC | 2 cut(s) | 64, 467 |
| Eco24I | GRGCYC | 2 cut(s) | 66, 469 |
| Eco47I | GGWCC | 1 cut(s) | 233 |
| Eco53kI | GAGCTC | 2 cut(s) | 64, 467 |
| EcoICRI | GAGCTC | 2 cut(s) | 64, 467 |
| EcoT38I | GRGCYC | 2 cut(s) | 66, 469 |
| EgeI | GGCGCC | 2 cut(s) | 188, 346 |
| EheI | GGCGCC | 2 cut(s) | 188, 346 |
| FaeI | CATG | 3 cut(s) | 62, 98, 338 |
| FatI | CATG | 3 cut(s) | 58, 94, 334 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| FriOI | GRGCYC | 2 cut(s) | 66, 469 |
| FspBI | CTAG | 2 cut(s) | 152, 554 |
| GlaI | GCGC | 3 cut(s) | 172, 188, 346 |
| HaeII | RGCGCY | 2 cut(s) | 190, 348 |
| HaeIII | GGCC | 1 cut(s) | 333 |
| HgaI | GACGC | 1 cut(s) | 383 |
| HhaI | GCGC | 3 cut(s) | 173, 189, 347 |
| Hin1I | GRCGYC | 2 cut(s) | 187, 345 |
| Hin1II | CATG | 3 cut(s) | 62, 98, 338 |
| Hin6I | GCGC | 3 cut(s) | 171, 187, 345 |
| HinP1I | GCGC | 3 cut(s) | 171, 187, 345 |
| HinfI | GANTC | 3 cut(s) | 21, 42, 155 |
| HphI | GGTGA | 2 cut(s) | 37, 475 |
| Hpy166II | GTNNAC | 1 cut(s) | 299 |
| Hpy188I | TCNGA | 1 cut(s) | 442 |
| Hpy188III | TCNNGA | 7 cut(s) | 59, 126, 152, 426, 470, 542, 554 |
| Hpy8I | GTNNAC | 1 cut(s) | 299 |
| HpyAV | CCTTC | 2 cut(s) | 251, 308 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 1 cut(s) | 35 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 193, 383, 494, 515 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 209, 357 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92I | GRCGYC | 2 cut(s) | 187, 345 |
| Hsp92II | CATG | 3 cut(s) | 62, 98, 338 |
| HspAI | GCGC | 3 cut(s) | 171, 187, 345 |
| KasI | GGCGCC | 2 cut(s) | 186, 344 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 3 cut(s) | 128, 442, 538 |
| LpnPI | CCDG | 1 cut(s) | 315 |
| MaeI | CTAG | 2 cut(s) | 152, 554 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 2 cut(s) | 28, 481 |
| MalI | GATC | 3 cut(s) | 130, 444, 540 |
| MboI | GATC | 3 cut(s) | 128, 442, 538 |
| MboII | GAAGA | 4 cut(s) | 124, 485, 548, 557 |
| MflI | RGATCY | 1 cut(s) | 128 |
| MhlI | GDGCHC | 3 cut(s) | 66, 454, 469 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluCI | AATT | 3 cut(s) | 121, 160, 477 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| Mly113I | GGCGCC | 2 cut(s) | 187, 345 |
| MnlI | CCTC | 5 cut(s) | 176, 287, 311, 337, 399 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MslI | CAYNNNNRTG | 3 cut(s) | 107, 339, 369 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MvnI | CGCG | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 193, 383, 494, 515 |
| NarI | GGCGCC | 2 cut(s) | 187, 345 |
| NdeII | GATC | 3 cut(s) | 128, 442, 538 |
| NlaIII | CATG | 3 cut(s) | 62, 98, 338 |
| NlaIV | GGNNCC | 3 cut(s) | 188, 287, 346 |
| NmuCI | GTSAC | 1 cut(s) | 481 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PfeI | GAWTC | 3 cut(s) | 21, 42, 155 |
| PluTI | GGCGCC | 2 cut(s) | 190, 348 |
| Psp124BI | GAGCTC | 2 cut(s) | 66, 469 |
| PspN4I | GGNNCC | 3 cut(s) | 188, 287, 346 |
| PspPI | GGNCC | 1 cut(s) | 233 |
| PsuI | RGATCY | 1 cut(s) | 128 |
| RseI | CAYNNNNRTG | 3 cut(s) | 107, 339, 369 |
| SacI | GAGCTC | 2 cut(s) | 66, 469 |
| Sau3AI | GATC | 3 cut(s) | 128, 442, 538 |
| Sau96I | GGNCC | 1 cut(s) | 233 |
| SduI | GDGCHC | 3 cut(s) | 66, 454, 469 |
| SetI | ASST | 8 cut(s) | 56, 66, 262, 298, 304, 391, 469, 520 |
| SfoI | GGCGCC | 2 cut(s) | 188, 346 |
| SinI | GGWCC | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 107, 339, 369 |
| Sse9I | AATT | 3 cut(s) | 121, 160, 477 |
| SsiI | CCGC | 1 cut(s) | 486 |
| SspDI | GGCGCC | 2 cut(s) | 186, 344 |
| SspMI | CTAG | 2 cut(s) | 152, 554 |
| SstI | GAGCTC | 2 cut(s) | 66, 469 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 4 cut(s) | 19, 24, 125, 427 |
| TasI | AATT | 3 cut(s) | 121, 160, 477 |
| TfiI | GAWTC | 3 cut(s) | 21, 42, 155 |
| TseFI | GTSAC | 1 cut(s) | 481 |
| Tsp45I | GTSAC | 1 cut(s) | 481 |
| TspDTI | ATGAA | 2 cut(s) | 47, 92 |
| TspGWI | ACGGA | 2 cut(s) | 121, 298 |
| VpaK11BI | GGWCC | 1 cut(s) | 233 |
| XbaI | TCTAGA | 2 cut(s) | 151, 553 |
| XspI | CTAG | 2 cut(s) | 152, 554 |