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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 363 |
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 414 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 2 cut(s) | 121, 380 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 459, 491 |
| AluBI | AGCT | 1 cut(s) | 307 |
| AluI | AGCT | 1 cut(s) | 307 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 366 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AspLEI | GCGC | 2 cut(s) | 416, 432 |
| AxyI | CCTNAGG | 1 cut(s) | 452 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BmiI | GGNNCC | 1 cut(s) | 431 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaAI | YACGTR | 1 cut(s) | 62 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| Bse21I | CCTNAGG | 1 cut(s) | 452 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseGI | GGATG | 1 cut(s) | 473 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsiWI | CGTACG | 1 cut(s) | 58 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 2 cut(s) | 288, 371 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 431 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssMI | GATC | 2 cut(s) | 288, 371 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstBAI | YACGTR | 1 cut(s) | 62 |
| BstDEI | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 473 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 2 cut(s) | 416, 432 |
| BstKTI | GATC | 2 cut(s) | 291, 374 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 2 cut(s) | 288, 371 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 436 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| Bsu36I | CCTNAGG | 1 cut(s) | 452 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 473 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 2 cut(s) | 416, 432 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CviAII | CATG | 2 cut(s) | 302, 338 |
| CviJI | RGCY | 3 cut(s) | 25, 102, 307 |
| CviKI_1 | RGCY | 3 cut(s) | 25, 102, 307 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 2 cut(s) | 290, 373 |
| DpnII | GATC | 2 cut(s) | 288, 371 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| Eco81I | CCTNAGG | 1 cut(s) | 452 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 2 cut(s) | 305, 341 |
| FaiI | YATR | 9 cut(s) | 99, 303, 320, 339, 363, 390, 408, 481, 483 |
| FatI | CATG | 2 cut(s) | 301, 337 |
| FokI | GGATG | 1 cut(s) | 480 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 2 cut(s) | 415, 431 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 2 cut(s) | 416, 432 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin1II | CATG | 2 cut(s) | 305, 341 |
| Hin6I | GCGC | 2 cut(s) | 414, 430 |
| HinP1I | GCGC | 2 cut(s) | 414, 430 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 267, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 5 cut(s) | 131, 302, 369, 395, 465 |
| HpyAV | CCTTC | 2 cut(s) | 15, 238 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 61, 345 |
| HpyCH4V | TGCA | 4 cut(s) | 156, 172, 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 436 |
| HpyF3I | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| HpySE526I | ACGT | 3 cut(s) | 57, 61, 345 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| Hsp92II | CATG | 2 cut(s) | 305, 341 |
| HspAI | GCGC | 2 cut(s) | 414, 430 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 2 cut(s) | 288, 371 |
| LpnPI | CCDG | 4 cut(s) | 31, 83, 408, 450 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 3 cut(s) | 57, 61, 345 |
| MaeIII | GTNAC | 2 cut(s) | 62, 274 |
| MalI | GATC | 2 cut(s) | 290, 373 |
| MboI | GATC | 2 cut(s) | 288, 371 |
| MboII | GAAGA | 4 cut(s) | 23, 53, 226, 367 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MluCI | AATT | 5 cut(s) | 173, 358, 364, 403, 529 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MmeI | TCCRAC | 1 cut(s) | 292 |
| MnlI | CCTC | 2 cut(s) | 113, 419 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MspI | CCGG | 1 cut(s) | 395 |
| MvnI | CGCG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 436 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NdeII | GATC | 2 cut(s) | 288, 371 |
| NlaIII | CATG | 2 cut(s) | 305, 341 |
| NlaIV | GGNNCC | 1 cut(s) | 431 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PfeI | GAWTC | 2 cut(s) | 267, 398 |
| Pfl23II | CGTACG | 1 cut(s) | 58 |
| PflFI | GACNNNGTC | 1 cut(s) | 344 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Ppu21I | YACGTR | 1 cut(s) | 62 |
| PsiI | TTATAA | 1 cut(s) | 363 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PspLI | CGTACG | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 1 cut(s) | 431 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| PsyI | GACNNNGTC | 1 cut(s) | 344 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 2 cut(s) | 288, 371 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SetI | ASST | 7 cut(s) | 60, 64, 84, 230, 309, 348, 453 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| Sse9I | AATT | 5 cut(s) | 173, 358, 364, 403, 529 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaiI | ACGT | 3 cut(s) | 60, 64, 348 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 5 cut(s) | 173, 358, 364, 403, 529 |
| TfiI | GAWTC | 2 cut(s) | 267, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 3 cut(s) | 17, 290, 335 |
| TspGWI | ACGGA | 1 cut(s) | 364 |
| Tth111I | GACNNNGTC | 1 cut(s) | 344 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XspI | CTAG | 1 cut(s) | 83 |