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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 300, 345 |
| Acc36I | ACCTGC | 1 cut(s) | 435 |
| AccB1I | GGYRCC | 3 cut(s) | 542, 563, 605 |
| AccBSI | CCGCTC | 1 cut(s) | 373 |
| AciI | CCGC | 5 cut(s) | 202, 373, 421, 442, 455 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcuI | CTGAAG | 1 cut(s) | 228 |
| AcvI | CACGTG | 1 cut(s) | 482 |
| AcyI | GRCGYC | 2 cut(s) | 564, 585 |
| AdeI | CACNNNGTG | 1 cut(s) | 635 |
| AfeI | AGCGCT | 2 cut(s) | 36, 47 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 171, 359, 360, 430, 483, 512, 619 |
| AflIII | ACRYGT | 2 cut(s) | 479, 669 |
| AgsI | TTSAA | 4 cut(s) | 85, 92, 121, 306 |
| AjnI | CCWGG | 1 cut(s) | 505 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 33, 65, 201, 233 |
| AluBI | AGCT | 4 cut(s) | 25, 149, 244, 266 |
| AluI | AGCT | 4 cut(s) | 25, 149, 244, 266 |
| Alw21I | GWGCWC | 1 cut(s) | 640 |
| Alw44I | GTGCAC | 1 cut(s) | 636 |
| AlwI | GGATC | 1 cut(s) | 233 |
| Aor51HI | AGCGCT | 2 cut(s) | 36, 47 |
| AoxI | GGCC | 2 cut(s) | 308, 522 |
| ApaLI | GTGCAC | 1 cut(s) | 636 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspA2I | CCTAGG | 1 cut(s) | 617 |
| AspLEI | GCGC | 5 cut(s) | 37, 48, 108, 366, 566 |
| AspS9I | GGNCC | 3 cut(s) | 309, 410, 522 |
| AvaII | GGWCC | 1 cut(s) | 410 |
| AvrII | CCTAGG | 1 cut(s) | 617 |
| BaeGI | GKGCMC | 1 cut(s) | 640 |
| BanI | GGYRCC | 3 cut(s) | 542, 563, 605 |
| BbrPI | CACGTG | 1 cut(s) | 482 |
| Bbv12I | GWGCWC | 1 cut(s) | 640 |
| BccI | CCATC | 1 cut(s) | 216 |
| BciT130I | CCWGG | 1 cut(s) | 507 |
| BciVI | GTATCC | 2 cut(s) | 451, 512 |
| BfaI | CTAG | 2 cut(s) | 38, 618 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfoI | RGCGCY | 3 cut(s) | 38, 49, 567 |
| BfuAI | ACCTGC | 1 cut(s) | 435 |
| BfuI | GTATCC | 2 cut(s) | 451, 512 |
| BlnI | CCTAGG | 1 cut(s) | 617 |
| Bme1390I | CCNGG | 1 cut(s) | 507 |
| Bme18I | GGWCC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 3 cut(s) | 309, 410, 522 |
| BmiI | GGNNCC | 6 cut(s) | 377, 411, 523, 544, 565, 607 |
| BmrFI | CCNGG | 1 cut(s) | 507 |
| BmsI | GCATC | 1 cut(s) | 4 |
| BsaAI | YACGTR | 1 cut(s) | 482 |
| BsaHI | GRCGYC | 2 cut(s) | 564, 585 |
| BsaJI | CCNNGG | 5 cut(s) | 505, 525, 546, 567, 617 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 478, 508, 598, 628 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 171, 359, 360, 430, 483, 512, 619 |
| Bse3DI | GCAATG | 2 cut(s) | 61, 478 |
| BseBI | CCWGG | 1 cut(s) | 507 |
| BseDI | CCNNGG | 5 cut(s) | 505, 525, 546, 567, 617 |
| BseGI | GGATG | 3 cut(s) | 19, 227, 407 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 171, 359, 360, 430, 483, 512, 619 |
| BseMI | GCAATG | 2 cut(s) | 61, 478 |
| BseMII | CTCAG | 1 cut(s) | 258 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 1 cut(s) | 640 |
| BshFI | GGCC | 2 cut(s) | 310, 524 |
| BshNI | GGYRCC | 3 cut(s) | 542, 563, 605 |
| BsiHKAI | GWGCWC | 1 cut(s) | 640 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 171, 359, 360, 430, 483, 512, 619 |
| BsnI | GGCC | 2 cut(s) | 310, 524 |
| Bsp1286I | GDGCHC | 1 cut(s) | 640 |
| Bsp143I | GATC | 2 cut(s) | 6, 225 |
| Bsp19I | CCATGG | 3 cut(s) | 525, 546, 567 |
| BspACI | CCGC | 5 cut(s) | 202, 373, 421, 442, 455 |
| BspANI | GGCC | 2 cut(s) | 310, 524 |
| BspCNI | CTCAG | 1 cut(s) | 259 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 6 cut(s) | 377, 411, 523, 544, 565, 607 |
| BspMI | ACCTGC | 1 cut(s) | 435 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BspQI | GCTCTTC | 2 cut(s) | 36, 156 |
| BspT107I | GGYRCC | 3 cut(s) | 542, 563, 605 |
| BsrBI | CCGCTC | 1 cut(s) | 373 |
| BsrDI | GCAATG | 2 cut(s) | 61, 478 |
| BssECI | CCNNGG | 5 cut(s) | 505, 525, 546, 567, 617 |
| BssMI | GATC | 2 cut(s) | 6, 225 |
| BssNI | GRCGYC | 2 cut(s) | 564, 585 |
| BssT1I | CCWWGG | 4 cut(s) | 525, 546, 567, 617 |
| Bst2UI | CCWGG | 1 cut(s) | 507 |
| Bst4CI | ACNGT | 1 cut(s) | 162 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 156 |
| BstACI | GRCGYC | 2 cut(s) | 564, 585 |
| BstBAI | YACGTR | 1 cut(s) | 482 |
| BstDEI | CTNAG | 1 cut(s) | 267 |
| BstDSI | CCRYGG | 3 cut(s) | 525, 546, 567 |
| BstF5I | GGATG | 3 cut(s) | 19, 227, 407 |
| BstH2I | RGCGCY | 3 cut(s) | 38, 49, 567 |
| BstHHI | GCGC | 5 cut(s) | 37, 48, 108, 366, 566 |
| BstKTI | GATC | 2 cut(s) | 9, 228 |
| BstMBI | GATC | 2 cut(s) | 6, 225 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 43, 370 |
| BstNI | CCWGG | 1 cut(s) | 507 |
| BstNSI | RCATGY | 1 cut(s) | 673 |
| BstSCI | CCNGG | 1 cut(s) | 505 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstSLI | GKGCMC | 1 cut(s) | 640 |
| BsuI | GTATCC | 2 cut(s) | 451, 512 |
| BsuRI | GGCC | 2 cut(s) | 310, 524 |
| BtgI | CCRYGG | 3 cut(s) | 525, 546, 567 |
| BtsCI | GGATG | 3 cut(s) | 19, 227, 407 |
| BtsIMutI | CAGTG | 1 cut(s) | 204 |
| BveI | ACCTGC | 1 cut(s) | 435 |
| CciI | TCATGA | 1 cut(s) | 331 |
| CfoI | GCGC | 5 cut(s) | 37, 48, 108, 366, 566 |
| Cfr13I | GGNCC | 3 cut(s) | 309, 410, 522 |
| CseI | GACGC | 1 cut(s) | 574 |
| CviJI | RGCY | 8 cut(s) | 25, 149, 244, 266, 310, 524, 530, 572 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 149, 244, 266, 310, 524, 530, 572 |
| DdeI | CTNAG | 1 cut(s) | 267 |
| DinI | GGCGCC | 1 cut(s) | 565 |
| DpnI | GATC | 2 cut(s) | 8, 227 |
| DpnII | GATC | 2 cut(s) | 6, 225 |
| DraIII | CACNNNGTG | 1 cut(s) | 635 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 156 |
| EarI | CTCTTC | 2 cut(s) | 36, 156 |
| Eco130I | CCWWGG | 4 cut(s) | 525, 546, 567, 617 |
| Eco47I | GGWCC | 1 cut(s) | 410 |
| Eco47III | AGCGCT | 2 cut(s) | 36, 47 |
| Eco57I | CTGAAG | 1 cut(s) | 228 |
| Eco72I | CACGTG | 1 cut(s) | 482 |
| EcoRII | CCWGG | 1 cut(s) | 505 |
| EcoT14I | CCWWGG | 4 cut(s) | 525, 546, 567, 617 |
| EgeI | GGCGCC | 1 cut(s) | 565 |
| EheI | GGCGCC | 1 cut(s) | 565 |
| ErhI | CCWWGG | 4 cut(s) | 525, 546, 567, 617 |
| FokI | GGATG | 3 cut(s) | 26, 234, 414 |
| FspBI | CTAG | 2 cut(s) | 38, 618 |
| GlaI | GCGC | 5 cut(s) | 36, 47, 107, 365, 565 |
| HaeII | RGCGCY | 3 cut(s) | 38, 49, 567 |
| HaeIII | GGCC | 2 cut(s) | 310, 524 |
| HgaI | GACGC | 1 cut(s) | 574 |
| HhaI | GCGC | 5 cut(s) | 37, 48, 108, 366, 566 |
| Hin1I | GRCGYC | 2 cut(s) | 564, 585 |
| Hin6I | GCGC | 5 cut(s) | 35, 46, 106, 364, 564 |
| HinP1I | GCGC | 5 cut(s) | 35, 46, 106, 364, 564 |
| HinfI | GANTC | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 1 cut(s) | 638 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 2 cut(s) | 229, 332 |
| Hpy8I | GTNNAC | 1 cut(s) | 638 |
| HpyAV | CCTTC | 2 cut(s) | 79, 428 |
| HpyCH4III | ACNGT | 1 cut(s) | 162 |
| HpyCH4IV | ACGT | 2 cut(s) | 481, 634 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 350, 471, 638 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 43, 370 |
| HpyF3I | CTNAG | 1 cut(s) | 267 |
| HpySE526I | ACGT | 2 cut(s) | 481, 634 |
| Hsp92I | GRCGYC | 2 cut(s) | 564, 585 |
| HspAI | GCGC | 5 cut(s) | 35, 46, 106, 364, 564 |
| KasI | GGCGCC | 1 cut(s) | 563 |
| Kzo9I | GATC | 2 cut(s) | 6, 225 |
| LguI | GCTCTTC | 2 cut(s) | 36, 156 |
| LmnI | GCTCC | 1 cut(s) | 370 |
| LpnPI | CCDG | 5 cut(s) | 90, 430, 435, 492, 519 |
| LweI | GCATC | 1 cut(s) | 4 |
| MaeI | CTAG | 2 cut(s) | 38, 618 |
| MaeII | ACGT | 2 cut(s) | 481, 634 |
| MalI | GATC | 2 cut(s) | 8, 227 |
| MbiI | CCGCTC | 1 cut(s) | 373 |
| MboI | GATC | 2 cut(s) | 6, 225 |
| MboII | GAAGA | 3 cut(s) | 53, 143, 394 |
| MhlI | GDGCHC | 1 cut(s) | 640 |
| MluCI | AATT | 5 cut(s) | 139, 295, 301, 340, 644 |
| Mly113I | GGCGCC | 1 cut(s) | 564 |
| MmeI | TCCRAC | 1 cut(s) | 199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 1 cut(s) | 647 |
| MspR9I | CCNGG | 1 cut(s) | 507 |
| MvaI | CCWGG | 1 cut(s) | 507 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 43, 370 |
| NarI | GGCGCC | 1 cut(s) | 564 |
| NcoI | CCATGG | 3 cut(s) | 525, 546, 567 |
| NdeII | GATC | 2 cut(s) | 6, 225 |
| NlaIV | GGNNCC | 6 cut(s) | 377, 411, 523, 544, 565, 607 |
| NspI | RCATGY | 1 cut(s) | 673 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PciI | ACATGT | 1 cut(s) | 669 |
| PciSI | GCTCTTC | 2 cut(s) | 36, 156 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 631 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PluTI | GGCGCC | 1 cut(s) | 567 |
| PmaCI | CACGTG | 1 cut(s) | 482 |
| PmlI | CACGTG | 1 cut(s) | 482 |
| Ppu21I | YACGTR | 1 cut(s) | 482 |
| PscI | ACATGT | 1 cut(s) | 669 |
| PsiI | TTATAA | 2 cut(s) | 300, 345 |
| Psp6I | CCWGG | 1 cut(s) | 505 |
| PspCI | CACGTG | 1 cut(s) | 482 |
| PspGI | CCWGG | 1 cut(s) | 505 |
| PspN4I | GGNNCC | 6 cut(s) | 377, 411, 523, 544, 565, 607 |
| PspPI | GGNCC | 3 cut(s) | 309, 410, 522 |
| SapI | GCTCTTC | 2 cut(s) | 36, 156 |
| SaqAI | TTAA | 1 cut(s) | 647 |
| Sau3AI | GATC | 2 cut(s) | 6, 225 |
| Sau96I | GGNCC | 3 cut(s) | 309, 410, 522 |
| ScrFI | CCNGG | 1 cut(s) | 507 |
| SduI | GDGCHC | 1 cut(s) | 640 |
| SfaNI | GCATC | 1 cut(s) | 4 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SfoI | GGCGCC | 1 cut(s) | 565 |
| SinI | GGWCC | 1 cut(s) | 410 |
| Sse9I | AATT | 5 cut(s) | 139, 295, 301, 340, 644 |
| SsiI | CCGC | 5 cut(s) | 202, 373, 421, 442, 455 |
| SspDI | GGCGCC | 1 cut(s) | 563 |
| SspMI | CTAG | 2 cut(s) | 38, 618 |
| StyD4I | CCNGG | 1 cut(s) | 505 |
| StyI | CCWWGG | 4 cut(s) | 525, 546, 567, 617 |
| TaaI | ACNGT | 1 cut(s) | 162 |
| TaiI | ACGT | 2 cut(s) | 484, 637 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TasI | AATT | 5 cut(s) | 139, 295, 301, 340, 644 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| Tru1I | TTAA | 1 cut(s) | 647 |
| Tru9I | TTAA | 1 cut(s) | 647 |
| TscAI | CASTG | 1 cut(s) | 211 |
| TspDTI | ATGAA | 2 cut(s) | 227, 320 |
| TspGWI | ACGGA | 1 cut(s) | 169 |
| TspRI | CASTG | 1 cut(s) | 211 |
| VneI | GTGCAC | 1 cut(s) | 636 |
| VpaK11BI | GGWCC | 1 cut(s) | 410 |
| XceI | RCATGY | 1 cut(s) | 673 |
| XmaJI | CCTAGG | 1 cut(s) | 617 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 38, 618 |