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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 582, 627 |
| AatII | GACGTC | 1 cut(s) | 190 |
| AccB1I | GGYRCC | 2 cut(s) | 118, 634 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 797 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 2 cut(s) | 658, 706 |
| AclWI | GGATC | 3 cut(s) | 94, 107, 515 |
| AcyI | GRCGYC | 1 cut(s) | 187 |
| AfaI | GTAC | 2 cut(s) | 148, 218 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 96, 390, 644, 645, 715, 797 |
| AflIII | ACRYGT | 1 cut(s) | 746 |
| AgsI | TTSAA | 5 cut(s) | 304, 311, 340, 588, 614 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 407 |
| AjnI | CCWGG | 1 cut(s) | 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 252, 284 |
| AluBI | AGCT | 6 cut(s) | 16, 152, 350, 461, 526, 548 |
| AluI | AGCT | 6 cut(s) | 16, 152, 350, 461, 526, 548 |
| AlwI | GGATC | 3 cut(s) | 94, 107, 515 |
| AoxI | GGCC | 1 cut(s) | 590 |
| AseI | ATTAAT | 1 cut(s) | 531 |
| AspLEI | GCGC | 2 cut(s) | 256, 651 |
| AspS9I | GGNCC | 1 cut(s) | 695 |
| AsuHPI | GGTGA | 1 cut(s) | 79 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| BamHI | GGATCC | 1 cut(s) | 99 |
| BanI | GGYRCC | 2 cut(s) | 118, 634 |
| BanII | GRGCYC | 1 cut(s) | 790 |
| BauI | CACGAG | 1 cut(s) | 511 |
| BccI | CCATC | 1 cut(s) | 90 |
| BciT130I | CCWGG | 1 cut(s) | 792 |
| BciVI | GTATCC | 1 cut(s) | 277 |
| BfaI | CTAG | 3 cut(s) | 237, 257, 569 |
| BfmI | CTRYAG | 2 cut(s) | 345, 594 |
| BfuI | GTATCC | 1 cut(s) | 277 |
| BglII | AGATCT | 1 cut(s) | 130 |
| Bme1390I | CCNGG | 1 cut(s) | 792 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 5 cut(s) | 101, 120, 636, 662, 789 |
| BmrFI | CCNGG | 1 cut(s) | 792 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BpmI | CTGGAG | 1 cut(s) | 774 |
| BsaHI | GRCGYC | 1 cut(s) | 187 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 96, 390, 644, 645, 715, 797 |
| Bse1I | ACTGG | 3 cut(s) | 46, 107, 505 |
| BseBI | CCWGG | 1 cut(s) | 792 |
| BseGI | GGATG | 3 cut(s) | 76, 238, 692 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 96, 390, 644, 645, 715, 797 |
| BseMII | CTCAG | 2 cut(s) | 471, 540 |
| BseNI | ACTGG | 3 cut(s) | 46, 107, 505 |
| BseRI | GAGGAG | 1 cut(s) | 789 |
| BshFI | GGCC | 1 cut(s) | 592 |
| BshNI | GGYRCC | 2 cut(s) | 118, 634 |
| BslFI | GGGAC | 1 cut(s) | 690 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 96, 390, 644, 645, 715, 797 |
| BsmFI | GGGAC | 1 cut(s) | 690 |
| BsnI | GGCC | 1 cut(s) | 592 |
| Bsp1286I | GDGCHC | 1 cut(s) | 790 |
| Bsp143I | GATC | 3 cut(s) | 99, 130, 507 |
| BspACI | CCGC | 2 cut(s) | 658, 706 |
| BspANI | GGCC | 1 cut(s) | 592 |
| BspCNI | CTCAG | 2 cut(s) | 470, 541 |
| BspLI | GGNNCC | 5 cut(s) | 101, 120, 636, 662, 789 |
| BspPI | GGATC | 3 cut(s) | 94, 107, 515 |
| BspT107I | GGYRCC | 2 cut(s) | 118, 634 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrI | ACTGG | 3 cut(s) | 46, 107, 505 |
| BssMI | GATC | 3 cut(s) | 99, 130, 507 |
| BssNI | GRCGYC | 1 cut(s) | 187 |
| BssSI | CACGAG | 1 cut(s) | 511 |
| Bst2BI | CACGAG | 1 cut(s) | 511 |
| Bst2UI | CCWGG | 1 cut(s) | 792 |
| Bst6I | CTCTTC | 3 cut(s) | 255, 296, 766 |
| BstACI | GRCGYC | 1 cut(s) | 187 |
| BstDEI | CTNAG | 3 cut(s) | 457, 549, 603 |
| BstF5I | GGATG | 3 cut(s) | 76, 238, 692 |
| BstHHI | GCGC | 2 cut(s) | 256, 651 |
| BstKTI | GATC | 3 cut(s) | 102, 133, 510 |
| BstMBI | GATC | 3 cut(s) | 99, 130, 507 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 475, 655 |
| BstNI | CCWGG | 1 cut(s) | 792 |
| BstNSI | RCATGY | 1 cut(s) | 750 |
| BstSCI | CCNGG | 1 cut(s) | 790 |
| BstSFI | CTRYAG | 2 cut(s) | 345, 594 |
| BstX2I | RGATCY | 2 cut(s) | 99, 130 |
| BstYI | RGATCY | 2 cut(s) | 99, 130 |
| BsuI | GTATCC | 1 cut(s) | 277 |
| BsuRI | GGCC | 1 cut(s) | 592 |
| BtsCI | GGATG | 3 cut(s) | 76, 238, 692 |
| CfoI | GCGC | 2 cut(s) | 256, 651 |
| Cfr13I | GGNCC | 1 cut(s) | 695 |
| Csp6I | GTAC | 2 cut(s) | 147, 217 |
| CviAII | CATG | 7 cut(s) | 193, 220, 385, 557, 747, 759, 797 |
| CviQI | GTAC | 2 cut(s) | 147, 217 |
| DdeI | CTNAG | 3 cut(s) | 457, 549, 603 |
| DpnI | GATC | 3 cut(s) | 101, 132, 509 |
| DpnII | GATC | 3 cut(s) | 99, 130, 507 |
| DriI | GACNNNNNGTC | 1 cut(s) | 407 |
| Eam1104I | CTCTTC | 3 cut(s) | 255, 296, 766 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 407 |
| EarI | CTCTTC | 3 cut(s) | 255, 296, 766 |
| Eco147I | AGGCCT | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 1 cut(s) | 790 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| EcoRII | CCWGG | 1 cut(s) | 790 |
| EcoT38I | GRGCYC | 1 cut(s) | 790 |
| FaeI | CATG | 7 cut(s) | 196, 223, 388, 560, 750, 762, 800 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 37 |
| FaqI | GGGAC | 1 cut(s) | 690 |
| FatI | CATG | 7 cut(s) | 192, 219, 384, 556, 746, 758, 796 |
| FokI | GGATG | 3 cut(s) | 83, 245, 699 |
| FriOI | GRGCYC | 1 cut(s) | 790 |
| FspBI | CTAG | 3 cut(s) | 237, 257, 569 |
| GlaI | GCGC | 2 cut(s) | 255, 650 |
| GsuI | CTGGAG | 1 cut(s) | 774 |
| HaeIII | GGCC | 1 cut(s) | 592 |
| HhaI | GCGC | 2 cut(s) | 256, 651 |
| Hin1I | GRCGYC | 1 cut(s) | 187 |
| Hin1II | CATG | 7 cut(s) | 196, 223, 388, 560, 750, 762, 800 |
| Hin6I | GCGC | 2 cut(s) | 254, 649 |
| HinP1I | GCGC | 2 cut(s) | 254, 649 |
| HindIII | AAGCTT | 1 cut(s) | 14 |
| HinfI | GANTC | 2 cut(s) | 35, 327 |
| HphI | GGTGA | 1 cut(s) | 79 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 3 cut(s) | 209, 364, 732 |
| Hpy188III | TCNNGA | 2 cut(s) | 511, 614 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyAV | CCTTC | 4 cut(s) | 457, 463, 713, 731 |
| HpyCH4IV | ACGT | 2 cut(s) | 187, 766 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 475, 655 |
| HpyF3I | CTNAG | 3 cut(s) | 457, 549, 603 |
| HpySE526I | ACGT | 2 cut(s) | 187, 766 |
| Hsp92I | GRCGYC | 1 cut(s) | 187 |
| Hsp92II | CATG | 7 cut(s) | 196, 223, 388, 560, 750, 762, 800 |
| HspAI | GCGC | 2 cut(s) | 254, 649 |
| Kzo9I | GATC | 3 cut(s) | 99, 130, 507 |
| LmnI | GCTCC | 2 cut(s) | 655, 793 |
| LpnPI | CCDG | 9 cut(s) | 27, 101, 120, 141, 309, 420, 486, 617, 777 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeI | CTAG | 3 cut(s) | 237, 257, 569 |
| MaeII | ACGT | 2 cut(s) | 187, 766 |
| MaeIII | GTNAC | 3 cut(s) | 64, 188, 409 |
| MalI | GATC | 3 cut(s) | 101, 132, 509 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 3 cut(s) | 99, 130, 507 |
| MboII | GAAGA | 3 cut(s) | 272, 283, 783 |
| MflI | RGATCY | 2 cut(s) | 99, 130 |
| MhlI | GDGCHC | 1 cut(s) | 790 |
| MluCI | AATT | 9 cut(s) | 111, 242, 334, 358, 426, 528, 577, 583, 622 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MnlI | CCTC | 9 cut(s) | 100, 299, 386, 451, 567, 610, 638, 767, 770 |
| MseI | TTAA | 2 cut(s) | 279, 531 |
| MslI | CAYNNNNRTG | 1 cut(s) | 732 |
| MspR9I | CCNGG | 1 cut(s) | 792 |
| MvaI | CCWGG | 1 cut(s) | 792 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 475, 655 |
| NdeII | GATC | 3 cut(s) | 99, 130, 507 |
| NlaIII | CATG | 7 cut(s) | 196, 223, 388, 560, 750, 762, 800 |
| NlaIV | GGNNCC | 5 cut(s) | 101, 120, 636, 662, 789 |
| NmuCI | GTSAC | 3 cut(s) | 64, 188, 409 |
| NspI | RCATGY | 1 cut(s) | 750 |
| PceI | AGGCCT | 1 cut(s) | 592 |
| PciI | ACATGT | 1 cut(s) | 746 |
| PfeI | GAWTC | 1 cut(s) | 327 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 797 |
| PfoI | TCCNGGA | 1 cut(s) | 790 |
| PleI | GAGTC | 1 cut(s) | 29 |
| PpsI | GAGTC | 1 cut(s) | 29 |
| PscI | ACATGT | 1 cut(s) | 746 |
| PshBI | ATTAAT | 1 cut(s) | 531 |
| PsiI | TTATAA | 2 cut(s) | 582, 627 |
| Psp6I | CCWGG | 1 cut(s) | 790 |
| PspGI | CCWGG | 1 cut(s) | 790 |
| PspN4I | GGNNCC | 5 cut(s) | 101, 120, 636, 662, 789 |
| PspPI | GGNCC | 1 cut(s) | 695 |
| PsuI | RGATCY | 2 cut(s) | 99, 130 |
| RsaI | GTAC | 2 cut(s) | 148, 218 |
| RsaNI | GTAC | 2 cut(s) | 147, 217 |
| RseI | CAYNNNNRTG | 1 cut(s) | 732 |
| SaqAI | TTAA | 2 cut(s) | 279, 531 |
| Sau3AI | GATC | 3 cut(s) | 99, 130, 507 |
| Sau96I | GGNCC | 1 cut(s) | 695 |
| SchI | GAGTC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 1 cut(s) | 792 |
| SduI | GDGCHC | 1 cut(s) | 790 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SfcI | CTRYAG | 2 cut(s) | 345, 594 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 732 |
| Sse9I | AATT | 9 cut(s) | 111, 242, 334, 358, 426, 528, 577, 583, 622 |
| SseBI | AGGCCT | 1 cut(s) | 592 |
| SsiI | CCGC | 2 cut(s) | 658, 706 |
| SspI | AATATT | 1 cut(s) | 565 |
| SspMI | CTAG | 3 cut(s) | 237, 257, 569 |
| StuI | AGGCCT | 1 cut(s) | 592 |
| StyD4I | CCNGG | 1 cut(s) | 790 |
| TaiI | ACGT | 2 cut(s) | 190, 769 |
| TaqI | TCGA | 3 cut(s) | 5, 141, 484 |
| TasI | AATT | 9 cut(s) | 111, 242, 334, 358, 426, 528, 577, 583, 622 |
| TatI | WGTACW | 1 cut(s) | 216 |
| TfiI | GAWTC | 1 cut(s) | 327 |
| Tru1I | TTAA | 2 cut(s) | 279, 531 |
| Tru9I | TTAA | 2 cut(s) | 279, 531 |
| TseFI | GTSAC | 3 cut(s) | 64, 188, 409 |
| Tsp45I | GTSAC | 3 cut(s) | 64, 188, 409 |
| TspDTI | ATGAA | 3 cut(s) | 170, 509, 750 |
| TspGWI | ACGGA | 3 cut(s) | 83, 520, 699 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 797 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| VspI | ATTAAT | 1 cut(s) | 531 |
| XceI | RCATGY | 1 cut(s) | 750 |
| XspI | CTAG | 3 cut(s) | 237, 257, 569 |
| ZraI | GACGTC | 1 cut(s) | 188 |