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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 374 |
| AccII | CGCG | 1 cut(s) | 474 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 110 |
| AfaI | GTAC | 3 cut(s) | 112, 204, 583 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflIII | ACRYGT | 1 cut(s) | 604 |
| AgsI | TTSAA | 2 cut(s) | 13, 167 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AluBI | AGCT | 5 cut(s) | 24, 155, 179, 367, 389 |
| AluI | AGCT | 5 cut(s) | 24, 155, 179, 367, 389 |
| Alw26I | GTCTC | 2 cut(s) | 32, 301 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 193 |
| ApeKI | GCWGC | 3 cut(s) | 155, 158, 198 |
| AspLEI | GCGC | 4 cut(s) | 50, 81, 476, 680 |
| AspS9I | GGNCC | 2 cut(s) | 67, 536 |
| AsuHPI | GGTGA | 2 cut(s) | 244, 656 |
| AsuII | TTCGAA | 1 cut(s) | 455 |
| AvaI | CYCGRG | 1 cut(s) | 193 |
| AvaII | GGWCC | 2 cut(s) | 67, 536 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 374 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 195, 227 |
| BbvI | GCAGC | 3 cut(s) | 142, 145, 210 |
| BccI | CCATC | 3 cut(s) | 92, 223, 675 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 301 |
| BfaI | CTAG | 3 cut(s) | 35, 342, 429 |
| BfoI | RGCGCY | 1 cut(s) | 681 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 199 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 200 |
| Bme18I | GGWCC | 2 cut(s) | 67, 536 |
| BmeT110I | CYCGRG | 1 cut(s) | 193 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 536 |
| BmiI | GGNNCC | 6 cut(s) | 68, 104, 376, 442, 590, 694 |
| BmsI | GCATC | 2 cut(s) | 357, 637 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| Bpu14I | TTCGAA | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 2 cut(s) | 435, 592 |
| BsaWI | WCCGGW | 1 cut(s) | 632 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse8I | GATNNNNATC | 1 cut(s) | 266 |
| BseDI | CCNNGG | 2 cut(s) | 435, 592 |
| BseGI | GGATG | 1 cut(s) | 667 |
| BseJI | GATNNNNATC | 1 cut(s) | 266 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 3 cut(s) | 142, 145, 210 |
| Bsh1236I | CGCG | 1 cut(s) | 474 |
| BshNI | GGYRCC | 1 cut(s) | 374 |
| BsiHKCI | CYCGRG | 1 cut(s) | 193 |
| BsiSI | CCGG | 1 cut(s) | 633 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmAI | GTCTC | 2 cut(s) | 32, 301 |
| BsmBI | CGTCTC | 1 cut(s) | 301 |
| BsoBI | CYCGRG | 1 cut(s) | 193 |
| Bsp119I | TTCGAA | 1 cut(s) | 455 |
| Bsp143I | GATC | 3 cut(s) | 102, 114, 684 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspFNI | CGCG | 1 cut(s) | 474 |
| BspLI | GGNNCC | 6 cut(s) | 68, 104, 376, 442, 590, 694 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 110 |
| BspT104I | TTCGAA | 1 cut(s) | 455 |
| BspT107I | GGYRCC | 1 cut(s) | 374 |
| BssECI | CCNNGG | 2 cut(s) | 435, 592 |
| BssMI | GATC | 3 cut(s) | 102, 114, 684 |
| Bst4CI | ACNGT | 1 cut(s) | 593 |
| Bst6I | CTCTTC | 1 cut(s) | 605 |
| BstBI | TTCGAA | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 2 cut(s) | 107, 507 |
| BstDSI | CCRYGG | 2 cut(s) | 435, 592 |
| BstF5I | GGATG | 1 cut(s) | 667 |
| BstFNI | CGCG | 1 cut(s) | 474 |
| BstH2I | RGCGCY | 1 cut(s) | 681 |
| BstHHI | GCGC | 4 cut(s) | 50, 81, 476, 680 |
| BstKTI | GATC | 3 cut(s) | 105, 117, 687 |
| BstMAI | GTCTC | 2 cut(s) | 32, 301 |
| BstMBI | GATC | 3 cut(s) | 102, 114, 684 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNSI | RCATGY | 1 cut(s) | 608 |
| BstUI | CGCG | 1 cut(s) | 474 |
| BstV1I | GCAGC | 3 cut(s) | 142, 145, 210 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 2 cut(s) | 435, 592 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 667 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CfoI | GCGC | 4 cut(s) | 50, 81, 476, 680 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 536 |
| CseI | GACGC | 2 cut(s) | 354, 498 |
| Csp6I | GTAC | 3 cut(s) | 111, 203, 582 |
| CviAII | CATG | 3 cut(s) | 71, 379, 605 |
| CviJI | RGCY | 9 cut(s) | 24, 95, 124, 155, 179, 277, 314, 367, 389 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 95, 124, 155, 179, 277, 314, 367, 389 |
| CviQI | GTAC | 3 cut(s) | 111, 203, 582 |
| DdeI | CTNAG | 2 cut(s) | 107, 507 |
| DpnI | GATC | 3 cut(s) | 104, 116, 686 |
| DpnII | GATC | 3 cut(s) | 102, 114, 684 |
| Eam1104I | CTCTTC | 1 cut(s) | 605 |
| EarI | CTCTTC | 1 cut(s) | 605 |
| Eco47I | GGWCC | 2 cut(s) | 67, 536 |
| Eco88I | CYCGRG | 1 cut(s) | 193 |
| Esp3I | CGTCTC | 1 cut(s) | 301 |
| FaeI | CATG | 3 cut(s) | 74, 382, 608 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 3 cut(s) | 70, 378, 604 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 199 |
| FokI | GGATG | 1 cut(s) | 654 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 199 |
| FspBI | CTAG | 3 cut(s) | 35, 342, 429 |
| GlaI | GCGC | 4 cut(s) | 49, 80, 475, 679 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 199 |
| HaeII | RGCGCY | 1 cut(s) | 681 |
| HapII | CCGG | 1 cut(s) | 633 |
| HgaI | GACGC | 2 cut(s) | 354, 498 |
| HhaI | GCGC | 4 cut(s) | 50, 81, 476, 680 |
| Hin1II | CATG | 3 cut(s) | 74, 382, 608 |
| Hin6I | GCGC | 4 cut(s) | 48, 79, 474, 678 |
| HinP1I | GCGC | 4 cut(s) | 48, 79, 474, 678 |
| HinfI | GANTC | 1 cut(s) | 142 |
| HpaII | CCGG | 1 cut(s) | 633 |
| HphI | GGTGA | 2 cut(s) | 244, 656 |
| Hpy166II | GTNNAC | 2 cut(s) | 242, 584 |
| Hpy188I | TCNGA | 1 cut(s) | 327 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 131, 271, 429, 525 |
| Hpy8I | GTNNAC | 2 cut(s) | 242, 584 |
| HpyAV | CCTTC | 1 cut(s) | 298 |
| HpyCH4III | ACNGT | 1 cut(s) | 593 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 384 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 2 cut(s) | 107, 507 |
| HpySE526I | ACGT | 2 cut(s) | 135, 384 |
| Hsp92II | CATG | 3 cut(s) | 74, 382, 608 |
| HspAI | GCGC | 4 cut(s) | 48, 79, 474, 678 |
| Kzo9I | GATC | 3 cut(s) | 102, 114, 684 |
| LmnI | GCTCC | 2 cut(s) | 34, 496 |
| LpnPI | CCDG | 8 cut(s) | 30, 36, 95, 116, 119, 510, 519, 646 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 145, 210 |
| LweI | GCATC | 2 cut(s) | 357, 637 |
| MaeI | CTAG | 3 cut(s) | 35, 342, 429 |
| MaeII | ACGT | 2 cut(s) | 135, 384 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 3 cut(s) | 104, 116, 686 |
| MboI | GATC | 3 cut(s) | 102, 114, 684 |
| MboII | GAAGA | 2 cut(s) | 427, 622 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MluCI | AATT | 5 cut(s) | 233, 369, 450, 463, 520 |
| MlyI | GAGTC | 1 cut(s) | 136 |
| MnlI | CCTC | 8 cut(s) | 156, 288, 479, 590, 614, 640, 681, 691 |
| MseI | TTAA | 2 cut(s) | 90, 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 410 |
| MspI | CCGG | 1 cut(s) | 633 |
| MvnI | CGCG | 1 cut(s) | 474 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NdeII | GATC | 3 cut(s) | 102, 114, 684 |
| NlaIII | CATG | 3 cut(s) | 74, 382, 608 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 104, 376, 442, 590, 694 |
| NspI | RCATGY | 1 cut(s) | 608 |
| NspV | TTCGAA | 1 cut(s) | 455 |
| PaeR7I | CTCGAG | 1 cut(s) | 193 |
| PciI | ACATGT | 1 cut(s) | 604 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 496 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 200 |
| PleI | GAGTC | 1 cut(s) | 136 |
| PpsI | GAGTC | 1 cut(s) | 136 |
| PscI | ACATGT | 1 cut(s) | 604 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 104, 376, 442, 590, 694 |
| PspPI | GGNCC | 2 cut(s) | 67, 536 |
| PspXI | VCTCGAGB | 1 cut(s) | 193 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 3 cut(s) | 112, 204, 583 |
| RsaNI | GTAC | 3 cut(s) | 111, 203, 582 |
| RseI | CAYNNNNRTG | 1 cut(s) | 410 |
| SaqAI | TTAA | 2 cut(s) | 90, 480 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 199 |
| Sau3AI | GATC | 3 cut(s) | 102, 114, 684 |
| Sau96I | GGNCC | 2 cut(s) | 67, 536 |
| SchI | GAGTC | 1 cut(s) | 136 |
| SfaNI | GCATC | 2 cut(s) | 357, 637 |
| Sfr274I | CTCGAG | 1 cut(s) | 193 |
| SfuI | TTCGAA | 1 cut(s) | 455 |
| SinI | GGWCC | 2 cut(s) | 67, 536 |
| SlaI | CTCGAG | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 410 |
| SmlI | CTYRAG | 1 cut(s) | 193 |
| SmoI | CTYRAG | 1 cut(s) | 193 |
| Sse9I | AATT | 5 cut(s) | 233, 369, 450, 463, 520 |
| SspMI | CTAG | 3 cut(s) | 35, 342, 429 |
| TaaI | ACNGT | 1 cut(s) | 593 |
| TaiI | ACGT | 2 cut(s) | 138, 387 |
| TaqI | TCGA | 4 cut(s) | 194, 270, 455, 683 |
| TasI | AATT | 5 cut(s) | 233, 369, 450, 463, 520 |
| Tru1I | TTAA | 2 cut(s) | 90, 480 |
| Tru9I | TTAA | 2 cut(s) | 90, 480 |
| TseI | GCWGC | 3 cut(s) | 155, 158, 198 |
| TspDTI | ATGAA | 2 cut(s) | 350, 395 |
| TspGWI | ACGGA | 1 cut(s) | 601 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 536 |
| XbaI | TCTAGA | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 608 |
| XhoI | CTCGAG | 1 cut(s) | 193 |
| XspI | CTAG | 3 cut(s) | 35, 342, 429 |