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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 165 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 689 |
| AccII | CGCG | 1 cut(s) | 441 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 1 cut(s) | 133 |
| AclI | AACGTT | 1 cut(s) | 84 |
| AclWI | GGATC | 1 cut(s) | 681 |
| AcoI | YGGCCR | 1 cut(s) | 208 |
| AcsI | RAATTY | 1 cut(s) | 487 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 452, 525, 689 |
| AgsI | TTSAA | 3 cut(s) | 62, 148, 282 |
| AluBI | AGCT | 3 cut(s) | 52, 334, 356 |
| AluI | AGCT | 3 cut(s) | 52, 334, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 336 |
| Alw26I | GTCTC | 2 cut(s) | 195, 268 |
| AlwI | GGATC | 1 cut(s) | 681 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 689 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| AoxI | GGCC | 1 cut(s) | 208 |
| ApeKI | GCWGC | 1 cut(s) | 70 |
| ApoI | RAATTY | 1 cut(s) | 487 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 1 cut(s) | 443 |
| AspS9I | GGNCC | 2 cut(s) | 40, 503 |
| AsuHPI | GGTGA | 2 cut(s) | 529, 653 |
| AvaII | GGWCC | 2 cut(s) | 40, 503 |
| BalI | TGGCCA | 1 cut(s) | 210 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BauI | CACGAG | 1 cut(s) | 10 |
| BbsI | GAAGAC | 2 cut(s) | 248, 669 |
| Bbv12I | GWGCWC | 1 cut(s) | 336 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 3 cut(s) | 114, 190, 632 |
| BcoDI | GTCTC | 2 cut(s) | 195, 268 |
| BfaI | CTAG | 1 cut(s) | 396 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BisI | GCNGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 72 |
| Bme18I | GGWCC | 2 cut(s) | 40, 503 |
| BmgT120I | GGNCC | 2 cut(s) | 40, 503 |
| BmiI | GGNNCC | 3 cut(s) | 42, 343, 559 |
| BpiI | GAAGAC | 2 cut(s) | 248, 669 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 3 cut(s) | 233, 642, 648 |
| BsaJI | CCNNGG | 3 cut(s) | 402, 447, 561 |
| BsaWI | WCCGGW | 1 cut(s) | 421 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 452, 525, 689 |
| Bse1I | ACTGG | 1 cut(s) | 694 |
| Bse8I | GATNNNNATC | 3 cut(s) | 233, 642, 648 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseDI | CCNNGG | 3 cut(s) | 402, 447, 561 |
| BseJI | GATNNNNATC | 3 cut(s) | 233, 642, 648 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 452, 525, 689 |
| BseNI | ACTGG | 1 cut(s) | 694 |
| BseRI | GAGGAG | 1 cut(s) | 50 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshFI | GGCC | 1 cut(s) | 210 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 336 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 452, 525, 689 |
| BsmAI | GTCTC | 2 cut(s) | 195, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsnI | GGCC | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 336 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspANI | GGCC | 1 cut(s) | 210 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 2 cut(s) | 328, 595 |
| BspLI | GGNNCC | 3 cut(s) | 42, 343, 559 |
| BspPI | GGATC | 1 cut(s) | 681 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BsrI | ACTGG | 1 cut(s) | 694 |
| BssECI | CCNNGG | 3 cut(s) | 402, 447, 561 |
| BssMI | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| BssSI | CACGAG | 1 cut(s) | 10 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst2BI | CACGAG | 1 cut(s) | 10 |
| Bst4CI | ACNGT | 1 cut(s) | 562 |
| BstC8I | GCNNGC | 1 cut(s) | 551 |
| BstDEI | CTNAG | 3 cut(s) | 411, 474, 653 |
| BstDSI | CCRYGG | 2 cut(s) | 402, 561 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstHHI | GCGC | 1 cut(s) | 443 |
| BstKTI | GATC | 5 cut(s) | 237, 634, 646, 652, 676 |
| BstMAI | GTCTC | 2 cut(s) | 195, 268 |
| BstMBI | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 608 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstV2I | GAAGAC | 2 cut(s) | 248, 669 |
| BsuRI | GGCC | 1 cut(s) | 210 |
| BtgI | CCRYGG | 2 cut(s) | 402, 561 |
| BtgZI | GCGATG | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 1 cut(s) | 551 |
| CaiI | CAGNNNCTG | 1 cut(s) | 689 |
| CciI | TCATGA | 2 cut(s) | 328, 595 |
| CfoI | GCGC | 1 cut(s) | 443 |
| Cfr13I | GGNCC | 2 cut(s) | 40, 503 |
| CseI | GACGC | 1 cut(s) | 465 |
| CviAII | CATG | 5 cut(s) | 271, 329, 346, 596, 619 |
| CviJI | RGCY | 7 cut(s) | 15, 52, 129, 176, 210, 334, 356 |
| CviKI_1 | RGCY | 7 cut(s) | 15, 52, 129, 176, 210, 334, 356 |
| DdeI | CTNAG | 3 cut(s) | 411, 474, 653 |
| DpnI | GATC | 5 cut(s) | 236, 633, 645, 651, 675 |
| DpnII | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| EaeI | YGGCCR | 1 cut(s) | 208 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco47I | GGWCC | 2 cut(s) | 40, 503 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 5 cut(s) | 274, 332, 349, 599, 622 |
| FatI | CATG | 5 cut(s) | 270, 328, 345, 595, 618 |
| Fnu4HI | GCNGC | 1 cut(s) | 71 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 1 cut(s) | 71 |
| FspBI | CTAG | 1 cut(s) | 396 |
| GlaI | GCGC | 1 cut(s) | 442 |
| GluI | GCNGC | 1 cut(s) | 71 |
| HaeIII | GGCC | 1 cut(s) | 210 |
| HapII | CCGG | 1 cut(s) | 422 |
| HgaI | GACGC | 1 cut(s) | 465 |
| HhaI | GCGC | 1 cut(s) | 443 |
| Hin1II | CATG | 5 cut(s) | 274, 332, 349, 599, 622 |
| Hin6I | GCGC | 1 cut(s) | 441 |
| HinP1I | GCGC | 1 cut(s) | 441 |
| HinfI | GANTC | 3 cut(s) | 92, 244, 425 |
| HpaII | CCGG | 1 cut(s) | 422 |
| HphI | GGTGA | 2 cut(s) | 529, 653 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 195, 294 |
| HpyAV | CCTTC | 2 cut(s) | 188, 523 |
| HpyCH4III | ACNGT | 1 cut(s) | 562 |
| HpyCH4IV | ACGT | 4 cut(s) | 84, 313, 351, 496 |
| HpyCH4V | TGCA | 2 cut(s) | 553, 575 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 608 |
| HpyF3I | CTNAG | 3 cut(s) | 411, 474, 653 |
| HpySE526I | ACGT | 4 cut(s) | 84, 313, 351, 496 |
| Hsp92II | CATG | 5 cut(s) | 274, 332, 349, 599, 622 |
| HspAI | GCGC | 1 cut(s) | 441 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Kzo9I | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| LpnPI | CCDG | 8 cut(s) | 110, 117, 294, 435, 477, 486, 675, 696 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| MaeI | CTAG | 1 cut(s) | 396 |
| MaeII | ACGT | 4 cut(s) | 84, 313, 351, 496 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MalI | GATC | 5 cut(s) | 236, 633, 645, 651, 675 |
| MboI | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| MboII | GAAGA | 4 cut(s) | 253, 394, 641, 674 |
| MhlI | GDGCHC | 1 cut(s) | 336 |
| MlsI | TGGCCA | 1 cut(s) | 210 |
| MluCI | AATT | 3 cut(s) | 286, 487, 613 |
| MluNI | TGGCCA | 1 cut(s) | 210 |
| MlyI | GAGTC | 3 cut(s) | 86, 238, 434 |
| MnlI | CCTC | 8 cut(s) | 28, 31, 38, 140, 446, 519, 539, 601 |
| Mox20I | TGGCCA | 1 cut(s) | 210 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MscI | TGGCCA | 1 cut(s) | 210 |
| MseI | TTAA | 1 cut(s) | 703 |
| Msp20I | TGGCCA | 1 cut(s) | 210 |
| MspI | CCGG | 1 cut(s) | 422 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 608 |
| NdeII | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| NlaIII | CATG | 5 cut(s) | 274, 332, 349, 599, 622 |
| NlaIV | GGNNCC | 3 cut(s) | 42, 343, 559 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| PagI | TCATGA | 2 cut(s) | 328, 595 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 463 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 689 |
| PkrI | GCNGC | 1 cut(s) | 72 |
| PleI | GAGTC | 3 cut(s) | 86, 238, 433 |
| PpsI | GAGTC | 3 cut(s) | 86, 238, 433 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| PsiI | TTATAA | 1 cut(s) | 165 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| Psp1406I | AACGTT | 1 cut(s) | 84 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| PspN4I | GGNNCC | 3 cut(s) | 42, 343, 559 |
| PspPI | GGNCC | 2 cut(s) | 40, 503 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| PstNI | CAGNNNCTG | 1 cut(s) | 689 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SaqAI | TTAA | 1 cut(s) | 703 |
| SatI | GCNGC | 1 cut(s) | 71 |
| Sau3AI | GATC | 5 cut(s) | 234, 631, 643, 649, 673 |
| Sau96I | GGNCC | 2 cut(s) | 40, 503 |
| SchI | GAGTC | 3 cut(s) | 86, 238, 434 |
| SduI | GDGCHC | 1 cut(s) | 336 |
| SetI | ASST | 8 cut(s) | 30, 54, 87, 316, 336, 354, 358, 499 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SinI | GGWCC | 2 cut(s) | 40, 503 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 3 cut(s) | 286, 487, 613 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspI | AATATT | 1 cut(s) | 373 |
| SspMI | CTAG | 1 cut(s) | 396 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 562 |
| TaiI | ACGT | 4 cut(s) | 87, 316, 354, 499 |
| TaqI | TCGA | 2 cut(s) | 237, 648 |
| TasI | AATT | 3 cut(s) | 286, 487, 613 |
| Tru1I | TTAA | 1 cut(s) | 703 |
| Tru9I | TTAA | 1 cut(s) | 703 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| TseI | GCWGC | 1 cut(s) | 70 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 4 cut(s) | 17, 317, 362, 612 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 689 |
| VpaK11BI | GGWCC | 2 cut(s) | 40, 503 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XapI | RAATTY | 1 cut(s) | 487 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 51 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 396 |