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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 255 |
| AciI | CCGC | 4 cut(s) | 125, 189, 337, 517 |
| AcoI | YGGCCR | 1 cut(s) | 101 |
| AcsI | RAATTY | 4 cut(s) | 178, 281, 360, 584 |
| AfaI | GTAC | 1 cut(s) | 9 |
| AgeI | ACCGGT | 1 cut(s) | 58 |
| AgsI | TTSAA | 5 cut(s) | 32, 148, 197, 280, 532 |
| AjiI | CACGTC | 1 cut(s) | 394 |
| AjnI | CCWGG | 1 cut(s) | 387 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 19, 51, 444, 476 |
| AluBI | AGCT | 2 cut(s) | 113, 206 |
| AluI | AGCT | 2 cut(s) | 113, 206 |
| Alw26I | GTCTC | 2 cut(s) | 448, 652 |
| Aor13HI | TCCGGA | 1 cut(s) | 255 |
| AoxI | GGCC | 2 cut(s) | 101, 351 |
| ApeKI | GCWGC | 2 cut(s) | 127, 206 |
| ApoI | RAATTY | 4 cut(s) | 178, 281, 360, 584 |
| AsiGI | ACCGGT | 1 cut(s) | 58 |
| AspS9I | GGNCC | 1 cut(s) | 159 |
| AvaII | GGWCC | 1 cut(s) | 159 |
| BalI | TGGCCA | 1 cut(s) | 103 |
| BauI | CACGAG | 1 cut(s) | 46 |
| BbsI | GAAGAC | 1 cut(s) | 632 |
| BbvI | GCAGC | 2 cut(s) | 139, 193 |
| BccI | CCATC | 3 cut(s) | 350, 498, 652 |
| BceAI | ACGGC | 1 cut(s) | 208 |
| BciT130I | CCWGG | 1 cut(s) | 389 |
| BciVI | GTATCC | 1 cut(s) | 361 |
| BcoDI | GTCTC | 2 cut(s) | 448, 652 |
| BfaI | CTAG | 3 cut(s) | 309, 384, 494 |
| BfuI | GTATCC | 1 cut(s) | 361 |
| BisI | GCNGC | 3 cut(s) | 128, 189, 207 |
| BlsI | GCNGC | 3 cut(s) | 129, 190, 208 |
| Bme1390I | CCNGG | 1 cut(s) | 389 |
| Bme18I | GGWCC | 1 cut(s) | 159 |
| BmgBI | CACGTC | 1 cut(s) | 394 |
| BmgT120I | GGNCC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 1 cut(s) | 160 |
| BmrFI | CCNGG | 1 cut(s) | 389 |
| BmsI | GCATC | 2 cut(s) | 352, 598 |
| BpiI | GAAGAC | 1 cut(s) | 632 |
| BpuEI | CTTGAG | 2 cut(s) | 332, 398 |
| BsaI | GGTCTC | 1 cut(s) | 448 |
| BsaWI | WCCGGW | 4 cut(s) | 58, 83, 106, 255 |
| Bse118I | RCCGGY | 2 cut(s) | 58, 302 |
| Bse1I | ACTGG | 2 cut(s) | 104, 146 |
| BseAI | TCCGGA | 1 cut(s) | 255 |
| BseBI | CCWGG | 1 cut(s) | 389 |
| BseGI | GGATG | 1 cut(s) | 264 |
| BseNI | ACTGG | 2 cut(s) | 104, 146 |
| BseXI | GCAGC | 2 cut(s) | 139, 193 |
| Bsh1285I | CGRYCG | 1 cut(s) | 84 |
| BshFI | GGCC | 2 cut(s) | 103, 353 |
| BshTI | ACCGGT | 1 cut(s) | 58 |
| BsiEI | CGRYCG | 1 cut(s) | 84 |
| BsiSI | CCGG | 5 cut(s) | 59, 84, 107, 256, 303 |
| BslFI | GGGAC | 1 cut(s) | 172 |
| BsmAI | GTCTC | 2 cut(s) | 448, 652 |
| BsmBI | CGTCTC | 1 cut(s) | 652 |
| BsmFI | GGGAC | 1 cut(s) | 172 |
| BsnI | GGCC | 2 cut(s) | 103, 353 |
| Bso31I | GGTCTC | 1 cut(s) | 448 |
| Bsp13I | TCCGGA | 1 cut(s) | 255 |
| Bsp143I | GATC | 1 cut(s) | 600 |
| BspACI | CCGC | 4 cut(s) | 125, 189, 337, 517 |
| BspANI | GGCC | 2 cut(s) | 103, 353 |
| BspEI | TCCGGA | 1 cut(s) | 255 |
| BspLI | GGNNCC | 1 cut(s) | 160 |
| BspTNI | GGTCTC | 1 cut(s) | 448 |
| BsrFI | RCCGGY | 2 cut(s) | 58, 302 |
| BsrI | ACTGG | 2 cut(s) | 104, 146 |
| BssAI | RCCGGY | 2 cut(s) | 58, 302 |
| BssMI | GATC | 1 cut(s) | 600 |
| BssSI | CACGAG | 1 cut(s) | 46 |
| Bst2BI | CACGAG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 389 |
| BstC8I | GCNNGC | 3 cut(s) | 186, 221, 341 |
| BstDEI | CTNAG | 1 cut(s) | 666 |
| BstF5I | GGATG | 1 cut(s) | 264 |
| BstKTI | GATC | 1 cut(s) | 603 |
| BstMAI | GTCTC | 2 cut(s) | 448, 652 |
| BstMBI | GATC | 1 cut(s) | 600 |
| BstMCI | CGRYCG | 1 cut(s) | 84 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 197, 206 |
| BstNI | CCWGG | 1 cut(s) | 389 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstSCI | CCNGG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 2 cut(s) | 139, 193 |
| BstV2I | GAAGAC | 1 cut(s) | 632 |
| BsuI | GTATCC | 1 cut(s) | 361 |
| BsuRI | GGCC | 2 cut(s) | 103, 353 |
| BtgZI | GCGATG | 1 cut(s) | 626 |
| BtrI | CACGTC | 1 cut(s) | 394 |
| BtsCI | GGATG | 1 cut(s) | 264 |
| Cac8I | GCNNGC | 3 cut(s) | 186, 221, 341 |
| Cfr10I | RCCGGY | 2 cut(s) | 58, 302 |
| Cfr13I | GGNCC | 1 cut(s) | 159 |
| Csp6I | GTAC | 1 cut(s) | 8 |
| CspAI | ACCGGT | 1 cut(s) | 58 |
| CviAII | CATG | 2 cut(s) | 220, 231 |
| CviQI | GTAC | 1 cut(s) | 8 |
| DdeI | CTNAG | 1 cut(s) | 666 |
| DpnI | GATC | 1 cut(s) | 602 |
| DpnII | GATC | 1 cut(s) | 600 |
| EaeI | YGGCCR | 1 cut(s) | 101 |
| EciI | GGCGGA | 1 cut(s) | 326 |
| Eco31I | GGTCTC | 1 cut(s) | 448 |
| Eco32I | GATATC | 1 cut(s) | 314 |
| Eco47I | GGWCC | 1 cut(s) | 159 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRI | GAATTC | 2 cut(s) | 360, 584 |
| EcoRII | CCWGG | 1 cut(s) | 387 |
| EcoRV | GATATC | 1 cut(s) | 314 |
| Esp3I | CGTCTC | 1 cut(s) | 652 |
| FaeI | CATG | 2 cut(s) | 223, 234 |
| FaiI | YATR | 5 cut(s) | 221, 232, 318, 413, 510 |
| FaqI | GGGAC | 1 cut(s) | 172 |
| FatI | CATG | 2 cut(s) | 219, 230 |
| FauI | CCCGC | 1 cut(s) | 132 |
| Fnu4HI | GCNGC | 3 cut(s) | 128, 189, 207 |
| FokI | GGATG | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 3 cut(s) | 128, 189, 207 |
| FspBI | CTAG | 3 cut(s) | 309, 384, 494 |
| GluI | GCNGC | 3 cut(s) | 128, 189, 207 |
| HaeIII | GGCC | 2 cut(s) | 103, 353 |
| HapII | CCGG | 5 cut(s) | 59, 84, 107, 256, 303 |
| Hin1II | CATG | 2 cut(s) | 223, 234 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HinfI | GANTC | 5 cut(s) | 12, 49, 373, 476, 628 |
| HpaII | CCGG | 5 cut(s) | 59, 84, 107, 256, 303 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 1 cut(s) | 166 |
| Hpy188III | TCNNGA | 8 cut(s) | 53, 256, 309, 329, 365, 377, 488, 542 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| HpyAV | CCTTC | 2 cut(s) | 426, 649 |
| HpyCH4IV | ACGT | 2 cut(s) | 393, 468 |
| HpyCH4V | TGCA | 3 cut(s) | 184, 567, 653 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 197, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 666 |
| HpySE526I | ACGT | 2 cut(s) | 393, 468 |
| Hsp92II | CATG | 2 cut(s) | 223, 234 |
| Kpn2I | TCCGGA | 1 cut(s) | 255 |
| Kzo9I | GATC | 1 cut(s) | 600 |
| LmnI | GCTCC | 2 cut(s) | 118, 292 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 193 |
| LweI | GCATC | 2 cut(s) | 352, 598 |
| MaeI | CTAG | 3 cut(s) | 309, 384, 494 |
| MaeII | ACGT | 2 cut(s) | 393, 468 |
| MaeIII | GTNAC | 2 cut(s) | 263, 473 |
| MalI | GATC | 1 cut(s) | 602 |
| MboI | GATC | 1 cut(s) | 600 |
| MboII | GAAGA | 2 cut(s) | 464, 637 |
| MlsI | TGGCCA | 1 cut(s) | 103 |
| MluCI | AATT | 8 cut(s) | 16, 27, 32, 178, 275, 281, 360, 584 |
| MluNI | TGGCCA | 1 cut(s) | 103 |
| MlyI | GAGTC | 4 cut(s) | 6, 58, 470, 622 |
| MnlI | CCTC | 2 cut(s) | 172, 524 |
| Mox20I | TGGCCA | 1 cut(s) | 103 |
| MroI | TCCGGA | 1 cut(s) | 255 |
| MscI | TGGCCA | 1 cut(s) | 103 |
| MseI | TTAA | 4 cut(s) | 41, 138, 570, 578 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| Msp20I | TGGCCA | 1 cut(s) | 103 |
| MspI | CCGG | 5 cut(s) | 59, 84, 107, 256, 303 |
| MspR9I | CCNGG | 1 cut(s) | 389 |
| MvaI | CCWGG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 197, 206 |
| NdeII | GATC | 1 cut(s) | 600 |
| NlaIII | CATG | 2 cut(s) | 223, 234 |
| NlaIV | GGNNCC | 1 cut(s) | 160 |
| NmuCI | GTSAC | 1 cut(s) | 473 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PaeI | GCATGC | 1 cut(s) | 223 |
| PfeI | GAWTC | 1 cut(s) | 373 |
| PinAI | ACCGGT | 1 cut(s) | 58 |
| PkrI | GCNGC | 3 cut(s) | 129, 190, 208 |
| PleI | GAGTC | 4 cut(s) | 6, 57, 470, 622 |
| PpsI | GAGTC | 4 cut(s) | 6, 57, 470, 622 |
| PpuMI | RGGWCCY | 1 cut(s) | 159 |
| Psp5II | RGGWCCY | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 387 |
| PspGI | CCWGG | 1 cut(s) | 387 |
| PspN4I | GGNNCC | 1 cut(s) | 160 |
| PspPI | GGNCC | 1 cut(s) | 159 |
| PspPPI | RGGWCCY | 1 cut(s) | 159 |
| RsaI | GTAC | 1 cut(s) | 9 |
| RsaNI | GTAC | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SaqAI | TTAA | 4 cut(s) | 41, 138, 570, 578 |
| SatI | GCNGC | 3 cut(s) | 128, 189, 207 |
| Sau3AI | GATC | 1 cut(s) | 600 |
| Sau96I | GGNCC | 1 cut(s) | 159 |
| SchI | GAGTC | 4 cut(s) | 6, 58, 470, 622 |
| ScrFI | CCNGG | 1 cut(s) | 389 |
| SfaNI | GCATC | 2 cut(s) | 352, 598 |
| SinI | GGWCC | 1 cut(s) | 159 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 2 cut(s) | 347, 377 |
| SmoI | CTYRAG | 2 cut(s) | 347, 377 |
| SphI | GCATGC | 1 cut(s) | 223 |
| Sse9I | AATT | 8 cut(s) | 16, 27, 32, 178, 275, 281, 360, 584 |
| SsiI | CCGC | 4 cut(s) | 125, 189, 337, 517 |
| SspMI | CTAG | 3 cut(s) | 309, 384, 494 |
| StyD4I | CCNGG | 1 cut(s) | 387 |
| TaiI | ACGT | 2 cut(s) | 396, 471 |
| TaqI | TCGA | 2 cut(s) | 450, 554 |
| TasI | AATT | 8 cut(s) | 16, 27, 32, 178, 275, 281, 360, 584 |
| TauI | GCSGC | 1 cut(s) | 191 |
| TfiI | GAWTC | 1 cut(s) | 373 |
| Tru1I | TTAA | 4 cut(s) | 41, 138, 570, 578 |
| Tru9I | TTAA | 4 cut(s) | 41, 138, 570, 578 |
| TseFI | GTSAC | 1 cut(s) | 473 |
| TseI | GCWGC | 2 cut(s) | 127, 206 |
| Tsp45I | GTSAC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 2 cut(s) | 428, 432 |
| VpaK11BI | GGWCC | 1 cut(s) | 159 |
| XapI | RAATTY | 4 cut(s) | 178, 281, 360, 584 |
| XbaI | TCTAGA | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XspI | CTAG | 3 cut(s) | 309, 384, 494 |