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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 726 |
| AccB1I | GGYRCC | 2 cut(s) | 681, 839 |
| AccII | CGCG | 1 cut(s) | 666 |
| AciI | CCGC | 3 cut(s) | 79, 361, 981 |
| AclWI | GGATC | 4 cut(s) | 235, 618, 704, 717 |
| AcoI | YGGCCR | 1 cut(s) | 826 |
| AcsI | RAATTY | 1 cut(s) | 22 |
| AcyI | GRCGYC | 2 cut(s) | 682, 840 |
| AfaI | GTAC | 2 cut(s) | 112, 248 |
| AgsI | TTSAA | 3 cut(s) | 22, 376, 877 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 6 cut(s) | 48, 155, 161, 559, 569, 962 |
| AluI | AGCT | 6 cut(s) | 48, 155, 161, 559, 569, 962 |
| Alw21I | GWGCWC | 1 cut(s) | 964 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 4 cut(s) | 235, 618, 704, 717 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 826 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 22 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspA2I | CCTAGG | 1 cut(s) | 106 |
| AspLEI | GCGC | 4 cut(s) | 668, 684, 842, 883 |
| AspS9I | GGNCC | 1 cut(s) | 728 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 728 |
| AvrII | CCTAGG | 1 cut(s) | 106 |
| AxyI | CCTNAGG | 1 cut(s) | 704 |
| BaeGI | GKGCMC | 1 cut(s) | 949 |
| BalI | TGGCCA | 1 cut(s) | 828 |
| BamHI | GGATCC | 1 cut(s) | 709 |
| BanI | GGYRCC | 2 cut(s) | 681, 839 |
| BanII | GRGCYC | 1 cut(s) | 964 |
| BauI | CACGAG | 1 cut(s) | 963 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 964 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 496, 867 |
| BclI | TGATCA | 1 cut(s) | 937 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 4 cut(s) | 45, 107, 126, 338 |
| BfoI | RGCGCY | 3 cut(s) | 685, 843, 884 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlnI | CCTAGG | 1 cut(s) | 106 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme18I | GGWCC | 1 cut(s) | 728 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 728 |
| BmiI | GGNNCC | 4 cut(s) | 683, 711, 782, 841 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 2 cut(s) | 682, 840 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 106, 627 |
| Bse1I | ACTGG | 2 cut(s) | 244, 538 |
| Bse21I | CCTNAGG | 1 cut(s) | 704 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 106, 627 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 597 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseNI | ACTGG | 2 cut(s) | 244, 538 |
| BseSI | GKGCMC | 1 cut(s) | 949 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 666 |
| BshFI | GGCC | 2 cut(s) | 95, 828 |
| BshNI | GGYRCC | 2 cut(s) | 681, 839 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 964 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 962 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 962 |
| BsnI | GGCC | 2 cut(s) | 95, 828 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 949, 964 |
| Bsp143I | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| Bsp19I | CCATGG | 1 cut(s) | 627 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 981 |
| BspANI | GGCC | 2 cut(s) | 95, 828 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspFNI | CGCG | 1 cut(s) | 666 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspLI | GGNNCC | 4 cut(s) | 683, 711, 782, 841 |
| BspPI | GGATC | 4 cut(s) | 235, 618, 704, 717 |
| BspQI | GCTCTTC | 1 cut(s) | 748 |
| BspT107I | GGYRCC | 2 cut(s) | 681, 839 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 244, 538 |
| BssECI | CCNNGG | 2 cut(s) | 106, 627 |
| BssMI | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| BssNI | GRCGYC | 2 cut(s) | 682, 840 |
| BssSI | CACGAG | 1 cut(s) | 963 |
| BssT1I | CCWWGG | 2 cut(s) | 106, 627 |
| Bst2BI | CACGAG | 1 cut(s) | 963 |
| Bst6I | CTCTTC | 3 cut(s) | 228, 748, 781 |
| BstACI | GRCGYC | 2 cut(s) | 682, 840 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 510, 704 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstEII | GGTNACC | 1 cut(s) | 815 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 597 |
| BstFNI | CGCG | 1 cut(s) | 666 |
| BstH2I | RGCGCY | 3 cut(s) | 685, 843, 884 |
| BstHHI | GCGC | 4 cut(s) | 668, 684, 842, 883 |
| BstKTI | GATC | 7 cut(s) | 243, 447, 543, 626, 712, 940, 1036 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 197, 688, 989 |
| BstPI | GGTNACC | 1 cut(s) | 815 |
| BstSLI | GKGCMC | 1 cut(s) | 949 |
| BstUI | CGCG | 1 cut(s) | 666 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 2 cut(s) | 623, 709 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 836 |
| BstYI | RGATCY | 2 cut(s) | 623, 709 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| Bsu36I | CCTNAGG | 1 cut(s) | 704 |
| BsuRI | GGCC | 2 cut(s) | 95, 828 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 597 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 553 |
| CfoI | GCGC | 4 cut(s) | 668, 684, 842, 883 |
| Cfr13I | GGNCC | 1 cut(s) | 728 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 2 cut(s) | 111, 247 |
| CviAII | CATG | 4 cut(s) | 554, 590, 628, 830 |
| CviQI | GTAC | 2 cut(s) | 111, 247 |
| DdeI | CTNAG | 3 cut(s) | 184, 510, 704 |
| DinI | GGCGCC | 2 cut(s) | 683, 841 |
| DpnI | GATC | 7 cut(s) | 242, 446, 542, 625, 711, 939, 1035 |
| DpnII | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 726 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 726 |
| EaeI | YGGCCR | 1 cut(s) | 826 |
| Eam1104I | CTCTTC | 3 cut(s) | 228, 748, 781 |
| EarI | CTCTTC | 3 cut(s) | 228, 748, 781 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 962 |
| Eco130I | CCWWGG | 2 cut(s) | 106, 627 |
| Eco24I | GRGCYC | 1 cut(s) | 964 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 728 |
| Eco53kI | GAGCTC | 1 cut(s) | 962 |
| Eco81I | CCTNAGG | 1 cut(s) | 704 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 815 |
| EcoICRI | GAGCTC | 1 cut(s) | 962 |
| EcoO65I | GGTNACC | 1 cut(s) | 815 |
| EcoT14I | CCWWGG | 2 cut(s) | 106, 627 |
| EcoT38I | GRGCYC | 1 cut(s) | 964 |
| EgeI | GGCGCC | 2 cut(s) | 683, 841 |
| EheI | GGCGCC | 2 cut(s) | 683, 841 |
| ErhI | CCWWGG | 2 cut(s) | 106, 627 |
| FaeI | CATG | 4 cut(s) | 557, 593, 631, 833 |
| FaqI | GGGAC | 1 cut(s) | 962 |
| FatI | CATG | 4 cut(s) | 553, 589, 627, 829 |
| FauI | CCCGC | 1 cut(s) | 988 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 937 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 584 |
| FriOI | GRGCYC | 1 cut(s) | 964 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 45, 107, 126, 338 |
| GlaI | GCGC | 4 cut(s) | 667, 683, 841, 882 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 3 cut(s) | 685, 843, 884 |
| HaeIII | GGCC | 2 cut(s) | 95, 828 |
| HhaI | GCGC | 4 cut(s) | 668, 684, 842, 883 |
| Hin1I | GRCGYC | 2 cut(s) | 682, 840 |
| Hin1II | CATG | 4 cut(s) | 557, 593, 631, 833 |
| Hin6I | GCGC | 4 cut(s) | 666, 682, 840, 881 |
| HinP1I | GCGC | 4 cut(s) | 666, 682, 840, 881 |
| HincII | GTYRAC | 1 cut(s) | 794 |
| HindII | GTYRAC | 1 cut(s) | 794 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 320, 472, 522, 869 |
| Hpy166II | GTNNAC | 1 cut(s) | 794 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 400, 937 |
| Hpy188III | TCNNGA | 8 cut(s) | 119, 332, 554, 621, 717, 921, 965, 1037 |
| Hpy8I | GTNNAC | 1 cut(s) | 794 |
| HpyAV | CCTTC | 5 cut(s) | 270, 493, 672, 723, 746 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 796 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 197, 688, 989 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 510, 704 |
| HpySE526I | ACGT | 2 cut(s) | 135, 796 |
| Hsp92I | GRCGYC | 2 cut(s) | 682, 840 |
| Hsp92II | CATG | 4 cut(s) | 557, 593, 631, 833 |
| HspAI | GCGC | 4 cut(s) | 666, 682, 840, 881 |
| KasI | GGCGCC | 2 cut(s) | 681, 839 |
| Ksp22I | TGATCA | 1 cut(s) | 937 |
| Kzo9I | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| LguI | GCTCTTC | 1 cut(s) | 748 |
| LmnI | GCTCC | 2 cut(s) | 34, 566 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 4 cut(s) | 45, 107, 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 796 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 505, 755, 815 |
| MalI | GATC | 7 cut(s) | 242, 446, 542, 625, 711, 939, 1035 |
| MboI | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| MflI | RGATCY | 2 cut(s) | 623, 709 |
| MhlI | GDGCHC | 2 cut(s) | 949, 964 |
| MlsI | TGGCCA | 1 cut(s) | 828 |
| MluCI | AATT | 5 cut(s) | 17, 22, 341, 616, 655 |
| MluNI | TGGCCA | 1 cut(s) | 828 |
| Mly113I | GGCGCC | 2 cut(s) | 682, 840 |
| MlyI | GAGTC | 3 cut(s) | 314, 466, 863 |
| MnlI | CCTC | 9 cut(s) | 181, 368, 497, 782, 802, 806, 832, 894, 1023 |
| Mox20I | TGGCCA | 1 cut(s) | 828 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 828 |
| MseI | TTAA | 4 cut(s) | 387, 414, 422, 852 |
| MslI | CAYNNNNRTG | 5 cut(s) | 231, 602, 834, 864, 1020 |
| Msp20I | TGGCCA | 1 cut(s) | 828 |
| MvnI | CGCG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 197, 688, 989 |
| NarI | GGCGCC | 2 cut(s) | 682, 840 |
| NcoI | CCATGG | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| NlaIII | CATG | 4 cut(s) | 557, 593, 631, 833 |
| NlaIV | GGNNCC | 4 cut(s) | 683, 711, 782, 841 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PciSI | GCTCTTC | 1 cut(s) | 748 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 522 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 314, 466, 863 |
| PluTI | GGCGCC | 2 cut(s) | 685, 843 |
| PpsI | GAGTC | 3 cut(s) | 314, 466, 863 |
| Psp124BI | GAGCTC | 1 cut(s) | 964 |
| PspEI | GGTNACC | 1 cut(s) | 815 |
| PspN4I | GGNNCC | 4 cut(s) | 683, 711, 782, 841 |
| PspPI | GGNCC | 1 cut(s) | 728 |
| PsuI | RGATCY | 2 cut(s) | 623, 709 |
| RsaI | GTAC | 2 cut(s) | 112, 248 |
| RsaNI | GTAC | 2 cut(s) | 111, 247 |
| RseI | CAYNNNNRTG | 5 cut(s) | 231, 602, 834, 864, 1020 |
| SacI | GAGCTC | 1 cut(s) | 964 |
| SapI | GCTCTTC | 1 cut(s) | 748 |
| SaqAI | TTAA | 4 cut(s) | 387, 414, 422, 852 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 7 cut(s) | 240, 444, 540, 623, 709, 937, 1033 |
| Sau96I | GGNCC | 1 cut(s) | 728 |
| SchI | GAGTC | 3 cut(s) | 314, 466, 863 |
| SduI | GDGCHC | 2 cut(s) | 949, 964 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfoI | GGCGCC | 2 cut(s) | 683, 841 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 728 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 231, 602, 834, 864, 1020 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 22, 341, 616, 655 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 981 |
| SspDI | GGCGCC | 2 cut(s) | 681, 839 |
| SspMI | CTAG | 4 cut(s) | 45, 107, 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 964 |
| StyI | CCWWGG | 2 cut(s) | 106, 627 |
| TaiI | ACGT | 2 cut(s) | 138, 799 |
| TaqI | TCGA | 6 cut(s) | 120, 294, 520, 525, 620, 922 |
| TasI | AATT | 5 cut(s) | 17, 22, 341, 616, 655 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 522 |
| Tru1I | TTAA | 4 cut(s) | 387, 414, 422, 852 |
| Tru9I | TTAA | 4 cut(s) | 387, 414, 422, 852 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 6 cut(s) | 215, 272, 276, 542, 587, 1038 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| VpaK11BI | GGWCC | 1 cut(s) | 728 |
| XapI | RAATTY | 1 cut(s) | 22 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 106 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 45, 107, 126, 338 |