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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 283 |
| AcsI | RAATTY | 1 cut(s) | 350 |
| AcvI | CACGTG | 1 cut(s) | 133 |
| AfaI | GTAC | 1 cut(s) | 245 |
| AgsI | TTSAA | 1 cut(s) | 298 |
| AleI | CACNNNNGTG | 1 cut(s) | 374 |
| AluBI | AGCT | 2 cut(s) | 152, 158 |
| AluI | AGCT | 2 cut(s) | 152, 158 |
| Alw26I | GTCTC | 1 cut(s) | 418 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 176 |
| ApoI | RAATTY | 1 cut(s) | 350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbrPI | CACGTG | 1 cut(s) | 133 |
| BbsI | GAAGAC | 3 cut(s) | 270, 280, 398 |
| BbvI | GCAGC | 1 cut(s) | 188 |
| BccI | CCATC | 3 cut(s) | 92, 212, 418 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 437 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 418 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 185 |
| BisI | GCNGC | 1 cut(s) | 177 |
| BlpI | GCTNAGC | 1 cut(s) | 144 |
| BlsI | GCNGC | 1 cut(s) | 178 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BpiI | GAAGAC | 3 cut(s) | 270, 280, 398 |
| BpmI | CTGGAG | 1 cut(s) | 224 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 138 |
| Bsa29I | ATCGAT | 1 cut(s) | 447 |
| BsaAI | YACGTR | 1 cut(s) | 133 |
| Bse1I | ACTGG | 2 cut(s) | 49, 241 |
| BseCI | ATCGAT | 1 cut(s) | 447 |
| BseGI | GGATG | 2 cut(s) | 207, 235 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseNI | ACTGG | 2 cut(s) | 49, 241 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseXI | GCAGC | 1 cut(s) | 188 |
| BshVI | ATCGAT | 1 cut(s) | 447 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 418 |
| BsmBI | CGTCTC | 1 cut(s) | 418 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 1 cut(s) | 366 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 144 |
| BspACI | CCGC | 2 cut(s) | 79, 283 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspDI | ATCGAT | 1 cut(s) | 447 |
| BsrI | ACTGG | 2 cut(s) | 49, 241 |
| BssMI | GATC | 1 cut(s) | 366 |
| BstBAI | YACGTR | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 1 cut(s) | 150 |
| BstDEI | CTNAG | 3 cut(s) | 144, 181, 432 |
| BstF5I | GGATG | 2 cut(s) | 207, 235 |
| BstKTI | GATC | 1 cut(s) | 369 |
| BstMAI | GTCTC | 1 cut(s) | 418 |
| BstMBI | GATC | 1 cut(s) | 366 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 149, 185, 194 |
| BstV1I | GCAGC | 1 cut(s) | 188 |
| BstV2I | GAAGAC | 3 cut(s) | 270, 280, 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 447 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuTUI | ATCGAT | 1 cut(s) | 447 |
| BtsCI | GGATG | 2 cut(s) | 207, 235 |
| Cac8I | GCNNGC | 1 cut(s) | 150 |
| ClaI | ATCGAT | 1 cut(s) | 447 |
| Csp6I | GTAC | 1 cut(s) | 244 |
| CviJI | RGCY | 7 cut(s) | 48, 124, 129, 152, 158, 179, 203 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 124, 129, 152, 158, 179, 203 |
| CviQI | GTAC | 1 cut(s) | 244 |
| DdeI | CTNAG | 3 cut(s) | 144, 181, 432 |
| DpnI | GATC | 1 cut(s) | 368 |
| DpnII | GATC | 1 cut(s) | 366 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco72I | CACGTG | 1 cut(s) | 133 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 350 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| Esp3I | CGTCTC | 1 cut(s) | 418 |
| FaiI | YATR | 4 cut(s) | 225, 227, 254, 357 |
| FauNDI | CATATG | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 1 cut(s) | 177 |
| FokI | GGATG | 2 cut(s) | 194, 242 |
| Fsp4HI | GCNGC | 1 cut(s) | 177 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 177 |
| GsuI | CTGGAG | 1 cut(s) | 224 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 233, 276, 394, 444 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 322 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 119, 308 |
| HpyCH4IV | ACGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 2 cut(s) | 419, 458 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 149, 185, 194 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 181, 432 |
| HpySE526I | ACGT | 1 cut(s) | 132 |
| Kzo9I | GATC | 1 cut(s) | 366 |
| LmnI | GCTCC | 2 cut(s) | 34, 243 |
| LpnPI | CCDG | 5 cut(s) | 23, 30, 46, 254, 283 |
| Lsp1109I | GCAGC | 1 cut(s) | 188 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 132 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 1 cut(s) | 368 |
| MboI | GATC | 1 cut(s) | 366 |
| MboII | GAAGA | 4 cut(s) | 272, 275, 285, 403 |
| MluCI | AATT | 2 cut(s) | 17, 350 |
| MlyI | GAGTC | 2 cut(s) | 270, 388 |
| MnlI | CCTC | 2 cut(s) | 178, 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 336, 344 |
| MslI | CAYNNNNRTG | 3 cut(s) | 212, 228, 374 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 149, 185, 194 |
| NdeI | CATATG | 1 cut(s) | 225 |
| NdeII | GATC | 1 cut(s) | 366 |
| OliI | CACNNNNGTG | 1 cut(s) | 374 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 233, 444 |
| PkrI | GCNGC | 1 cut(s) | 178 |
| PleI | GAGTC | 2 cut(s) | 270, 388 |
| PmaCI | CACGTG | 1 cut(s) | 133 |
| PmlI | CACGTG | 1 cut(s) | 133 |
| PpsI | GAGTC | 2 cut(s) | 270, 388 |
| Ppu21I | YACGTR | 1 cut(s) | 133 |
| PspCI | CACGTG | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 245 |
| RsaNI | GTAC | 1 cut(s) | 244 |
| RseI | CAYNNNNRTG | 3 cut(s) | 212, 228, 374 |
| SaqAI | TTAA | 2 cut(s) | 336, 344 |
| SatI | GCNGC | 1 cut(s) | 177 |
| Sau3AI | GATC | 1 cut(s) | 366 |
| SchI | GAGTC | 2 cut(s) | 270, 388 |
| SetI | ASST | 5 cut(s) | 12, 65, 135, 154, 160 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 212, 228, 374 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 153 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 153 |
| Sse9I | AATT | 2 cut(s) | 17, 350 |
| SsiI | CCGC | 2 cut(s) | 79, 283 |
| SspMI | CTAG | 1 cut(s) | 126 |
| TaiI | ACGT | 1 cut(s) | 135 |
| TaqI | TCGA | 3 cut(s) | 120, 442, 447 |
| TasI | AATT | 2 cut(s) | 17, 350 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 233, 444 |
| Tru1I | TTAA | 2 cut(s) | 336, 344 |
| Tru9I | TTAA | 2 cut(s) | 336, 344 |
| TseI | GCWGC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 2 cut(s) | 269, 273 |
| XapI | RAATTY | 1 cut(s) | 350 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 1 cut(s) | 126 |