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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 651 |
| AccB1I | GGYRCC | 2 cut(s) | 606, 764 |
| AccII | CGCG | 1 cut(s) | 591 |
| AccIII | TCCGGA | 1 cut(s) | 571 |
| AciI | CCGC | 1 cut(s) | 25 |
| AclWI | GGATC | 1 cut(s) | 543 |
| AcoI | YGGCCR | 1 cut(s) | 751 |
| AcsI | RAATTY | 1 cut(s) | 374 |
| AcyI | GRCGYC | 2 cut(s) | 607, 765 |
| AfaI | GTAC | 1 cut(s) | 194 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 602 |
| AgsI | TTSAA | 2 cut(s) | 322, 802 |
| AjiI | CACGTC | 1 cut(s) | 82 |
| AjnI | CCWGG | 2 cut(s) | 51, 75 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 234, 266 |
| AleI | CACNNNNGTG | 1 cut(s) | 312 |
| AluBI | AGCT | 3 cut(s) | 101, 484, 494 |
| AluI | AGCT | 3 cut(s) | 101, 484, 494 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 1 cut(s) | 238 |
| AlwI | GGATC | 1 cut(s) | 543 |
| Aor13HI | TCCGGA | 1 cut(s) | 571 |
| AoxI | GGCC | 1 cut(s) | 751 |
| ApeKI | GCWGC | 1 cut(s) | 125 |
| ApoI | RAATTY | 1 cut(s) | 374 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 351 |
| AspLEI | GCGC | 4 cut(s) | 593, 609, 767, 808 |
| AspS9I | GGNCC | 2 cut(s) | 259, 653 |
| AvaII | GGWCC | 2 cut(s) | 259, 653 |
| BalI | TGGCCA | 1 cut(s) | 753 |
| BanI | GGYRCC | 2 cut(s) | 606, 764 |
| BanII | GRGCYC | 1 cut(s) | 486 |
| BbsI | GAAGAC | 2 cut(s) | 219, 422 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BbvI | GCAGC | 1 cut(s) | 137 |
| BccI | CCATC | 5 cut(s) | 38, 161, 288, 418, 792 |
| BciT130I | CCWGG | 2 cut(s) | 53, 77 |
| BciVI | GTATCC | 2 cut(s) | 49, 628 |
| BcoDI | GTCTC | 1 cut(s) | 238 |
| BfaI | CTAG | 2 cut(s) | 72, 239 |
| BfmI | CTRYAG | 1 cut(s) | 456 |
| BfoI | RGCGCY | 3 cut(s) | 610, 768, 809 |
| BfuI | GTATCC | 2 cut(s) | 49, 628 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 134 |
| BisI | GCNGC | 1 cut(s) | 126 |
| BlsI | GCNGC | 1 cut(s) | 127 |
| Bme1390I | CCNGG | 2 cut(s) | 53, 77 |
| Bme18I | GGWCC | 2 cut(s) | 259, 653 |
| BmgBI | CACGTC | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 2 cut(s) | 259, 653 |
| BmiI | GGNNCC | 3 cut(s) | 268, 608, 766 |
| BmrFI | CCNGG | 2 cut(s) | 53, 77 |
| BmsI | GCATC | 1 cut(s) | 388 |
| BpiI | GAAGAC | 2 cut(s) | 219, 422 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| BpuEI | CTTGAG | 3 cut(s) | 20, 50, 87 |
| BsaHI | GRCGYC | 2 cut(s) | 607, 765 |
| BsaI | GGTCTC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 2 cut(s) | 262, 552 |
| BsaWI | WCCGGW | 1 cut(s) | 571 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 602 |
| Bse1I | ACTGG | 1 cut(s) | 190 |
| BseAI | TCCGGA | 1 cut(s) | 571 |
| BseBI | CCWGG | 2 cut(s) | 53, 77 |
| BseDI | CCNNGG | 2 cut(s) | 262, 552 |
| BseGI | GGATG | 3 cut(s) | 156, 184, 522 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseNI | ACTGG | 1 cut(s) | 190 |
| BseXI | GCAGC | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 1 cut(s) | 591 |
| BshFI | GGCC | 1 cut(s) | 753 |
| BshNI | GGYRCC | 2 cut(s) | 606, 764 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiSI | CCGG | 1 cut(s) | 572 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BsmAI | GTCTC | 1 cut(s) | 238 |
| BsnI | GGCC | 1 cut(s) | 753 |
| Bso31I | GGTCTC | 1 cut(s) | 238 |
| Bsp1286I | GDGCHC | 1 cut(s) | 486 |
| Bsp13I | TCCGGA | 1 cut(s) | 571 |
| Bsp143I | GATC | 2 cut(s) | 390, 548 |
| Bsp19I | CCATGG | 2 cut(s) | 262, 552 |
| BspACI | CCGC | 1 cut(s) | 25 |
| BspANI | GGCC | 1 cut(s) | 753 |
| BspEI | TCCGGA | 1 cut(s) | 571 |
| BspFNI | CGCG | 1 cut(s) | 591 |
| BspHI | TCATGA | 1 cut(s) | 478 |
| BspLI | GGNNCC | 3 cut(s) | 268, 608, 766 |
| BspMAI | CTGCAG | 1 cut(s) | 460 |
| BspPI | GGATC | 1 cut(s) | 543 |
| BspT107I | GGYRCC | 2 cut(s) | 606, 764 |
| BspTNI | GGTCTC | 1 cut(s) | 238 |
| BsrI | ACTGG | 1 cut(s) | 190 |
| BssECI | CCNNGG | 2 cut(s) | 262, 552 |
| BssMI | GATC | 2 cut(s) | 390, 548 |
| BssNI | GRCGYC | 2 cut(s) | 607, 765 |
| BssT1I | CCWWGG | 2 cut(s) | 262, 552 |
| Bst2UI | CCWGG | 2 cut(s) | 53, 77 |
| Bst6I | CTCTTC | 1 cut(s) | 706 |
| BstACI | GRCGYC | 2 cut(s) | 607, 765 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 4 cut(s) | 130, 432, 597, 777 |
| BstDSI | CCRYGG | 2 cut(s) | 262, 552 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 600 |
| BstF5I | GGATG | 3 cut(s) | 156, 184, 522 |
| BstFNI | CGCG | 1 cut(s) | 591 |
| BstH2I | RGCGCY | 3 cut(s) | 610, 768, 809 |
| BstHHI | GCGC | 4 cut(s) | 593, 609, 767, 808 |
| BstKTI | GATC | 2 cut(s) | 393, 551 |
| BstMAI | GTCTC | 1 cut(s) | 238 |
| BstMBI | GATC | 2 cut(s) | 390, 548 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 143, 613 |
| BstNI | CCWGG | 2 cut(s) | 53, 77 |
| BstSCI | CCNGG | 2 cut(s) | 51, 75 |
| BstSFI | CTRYAG | 1 cut(s) | 456 |
| BstUI | CGCG | 1 cut(s) | 591 |
| BstV1I | GCAGC | 1 cut(s) | 137 |
| BstV2I | GAAGAC | 2 cut(s) | 219, 422 |
| BstX2I | RGATCY | 1 cut(s) | 548 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 761 |
| BstYI | RGATCY | 1 cut(s) | 548 |
| BsuI | GTATCC | 2 cut(s) | 49, 628 |
| BsuRI | GGCC | 1 cut(s) | 753 |
| BtgI | CCRYGG | 2 cut(s) | 262, 552 |
| BtgZI | GCGATG | 1 cut(s) | 416 |
| BtrI | CACGTC | 1 cut(s) | 82 |
| BtsCI | GGATG | 3 cut(s) | 156, 184, 522 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| CciI | TCATGA | 1 cut(s) | 478 |
| CfoI | GCGC | 4 cut(s) | 593, 609, 767, 808 |
| Cfr13I | GGNCC | 2 cut(s) | 259, 653 |
| Csp6I | GTAC | 1 cut(s) | 193 |
| CviAII | CATG | 6 cut(s) | 263, 479, 515, 553, 722, 755 |
| CviQI | GTAC | 1 cut(s) | 193 |
| DdeI | CTNAG | 4 cut(s) | 130, 432, 597, 777 |
| DinI | GGCGCC | 2 cut(s) | 608, 766 |
| DpnI | GATC | 2 cut(s) | 392, 550 |
| DpnII | GATC | 2 cut(s) | 390, 548 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 651 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 651 |
| EaeI | YGGCCR | 1 cut(s) | 751 |
| Eam1104I | CTCTTC | 1 cut(s) | 706 |
| EarI | CTCTTC | 1 cut(s) | 706 |
| EciI | GGCGGA | 1 cut(s) | 14 |
| Ecl136II | GAGCTC | 1 cut(s) | 484 |
| Eco130I | CCWWGG | 2 cut(s) | 262, 552 |
| Eco24I | GRGCYC | 1 cut(s) | 486 |
| Eco31I | GGTCTC | 1 cut(s) | 238 |
| Eco32I | GATATC | 1 cut(s) | 7 |
| Eco47I | GGWCC | 2 cut(s) | 259, 653 |
| Eco53kI | GAGCTC | 1 cut(s) | 484 |
| EcoICRI | GAGCTC | 1 cut(s) | 484 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 600 |
| EcoRI | GAATTC | 1 cut(s) | 374 |
| EcoRII | CCWGG | 2 cut(s) | 51, 75 |
| EcoRV | GATATC | 1 cut(s) | 7 |
| EcoT14I | CCWWGG | 2 cut(s) | 262, 552 |
| EcoT38I | GRGCYC | 1 cut(s) | 486 |
| EgeI | GGCGCC | 2 cut(s) | 608, 766 |
| EheI | GGCGCC | 2 cut(s) | 608, 766 |
| ErhI | CCWWGG | 2 cut(s) | 262, 552 |
| FaeI | CATG | 6 cut(s) | 266, 482, 518, 556, 725, 758 |
| FatI | CATG | 6 cut(s) | 262, 478, 514, 552, 721, 754 |
| FauNDI | CATATG | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 1 cut(s) | 126 |
| FokI | GGATG | 3 cut(s) | 143, 191, 509 |
| FriOI | GRGCYC | 1 cut(s) | 486 |
| Fsp4HI | GCNGC | 1 cut(s) | 126 |
| FspBI | CTAG | 2 cut(s) | 72, 239 |
| GlaI | GCGC | 4 cut(s) | 592, 608, 766, 807 |
| GluI | GCNGC | 1 cut(s) | 126 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HaeII | RGCGCY | 3 cut(s) | 610, 768, 809 |
| HaeIII | GGCC | 1 cut(s) | 753 |
| HapII | CCGG | 1 cut(s) | 572 |
| HhaI | GCGC | 4 cut(s) | 593, 609, 767, 808 |
| Hin1I | GRCGYC | 2 cut(s) | 607, 765 |
| Hin1II | CATG | 6 cut(s) | 266, 482, 518, 556, 725, 758 |
| Hin6I | GCGC | 4 cut(s) | 591, 607, 765, 806 |
| HinP1I | GCGC | 4 cut(s) | 591, 607, 765, 806 |
| HinfI | GANTC | 7 cut(s) | 31, 48, 61, 166, 182, 575, 794 |
| HpaII | CCGG | 1 cut(s) | 572 |
| Hpy166II | GTNNAC | 1 cut(s) | 719 |
| Hpy188I | TCNGA | 1 cut(s) | 346 |
| Hpy188III | TCNNGA | 4 cut(s) | 278, 479, 546, 572 |
| Hpy8I | GTNNAC | 1 cut(s) | 719 |
| HpyAV | CCTTC | 2 cut(s) | 216, 671 |
| HpyCH4IV | ACGT | 2 cut(s) | 81, 646 |
| HpyCH4V | TGCA | 1 cut(s) | 458 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 143, 613 |
| HpyF3I | CTNAG | 4 cut(s) | 130, 432, 597, 777 |
| HpySE526I | ACGT | 2 cut(s) | 81, 646 |
| Hsp92I | GRCGYC | 2 cut(s) | 607, 765 |
| Hsp92II | CATG | 6 cut(s) | 266, 482, 518, 556, 725, 758 |
| HspAI | GCGC | 4 cut(s) | 591, 607, 765, 806 |
| KasI | GGCGCC | 2 cut(s) | 606, 764 |
| Kpn2I | TCCGGA | 1 cut(s) | 571 |
| Kzo9I | GATC | 2 cut(s) | 390, 548 |
| LmnI | GCTCC | 2 cut(s) | 272, 491 |
| Lsp1109I | GCAGC | 1 cut(s) | 137 |
| LweI | GCATC | 1 cut(s) | 388 |
| MaeI | CTAG | 2 cut(s) | 72, 239 |
| MaeII | ACGT | 2 cut(s) | 81, 646 |
| MaeIII | GTNAC | 2 cut(s) | 451, 680 |
| MalI | GATC | 2 cut(s) | 392, 550 |
| MboI | GATC | 2 cut(s) | 390, 548 |
| MboII | GAAGA | 5 cut(s) | 224, 254, 427, 544, 723 |
| MflI | RGATCY | 1 cut(s) | 548 |
| MhlI | GDGCHC | 1 cut(s) | 486 |
| MlsI | TGGCCA | 1 cut(s) | 753 |
| MluCI | AATT | 4 cut(s) | 374, 444, 541, 580 |
| MluNI | TGGCCA | 1 cut(s) | 753 |
| Mly113I | GGCGCC | 2 cut(s) | 607, 765 |
| MlyI | GAGTC | 2 cut(s) | 160, 788 |
| MnlI | CCTC | 6 cut(s) | 127, 314, 596, 707, 727, 757 |
| Mox20I | TGGCCA | 1 cut(s) | 753 |
| MroI | TCCGGA | 1 cut(s) | 571 |
| MroXI | GAANNNNTTC | 1 cut(s) | 351 |
| MscI | TGGCCA | 1 cut(s) | 753 |
| MseI | TTAA | 4 cut(s) | 333, 360, 368, 811 |
| MslI | CAYNNNNRTG | 7 cut(s) | 18, 161, 177, 312, 527, 759, 789 |
| Msp20I | TGGCCA | 1 cut(s) | 753 |
| MspI | CCGG | 1 cut(s) | 572 |
| MspR9I | CCNGG | 2 cut(s) | 53, 77 |
| MvaI | CCWGG | 2 cut(s) | 53, 77 |
| MvnI | CGCG | 1 cut(s) | 591 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 143, 613 |
| NarI | GGCGCC | 2 cut(s) | 607, 765 |
| NcoI | CCATGG | 2 cut(s) | 262, 552 |
| NdeI | CATATG | 1 cut(s) | 174 |
| NdeII | GATC | 2 cut(s) | 390, 548 |
| NlaIII | CATG | 6 cut(s) | 266, 482, 518, 556, 725, 758 |
| NlaIV | GGNNCC | 3 cut(s) | 268, 608, 766 |
| OliI | CACNNNNGTG | 1 cut(s) | 312 |
| PagI | TCATGA | 1 cut(s) | 478 |
| PdmI | GAANNNNTTC | 1 cut(s) | 351 |
| PfeI | GAWTC | 5 cut(s) | 31, 48, 61, 182, 575 |
| PfoI | TCCNGGA | 1 cut(s) | 51 |
| PkrI | GCNGC | 1 cut(s) | 127 |
| PleI | GAGTC | 2 cut(s) | 160, 788 |
| PluTI | GGCGCC | 2 cut(s) | 610, 768 |
| PpsI | GAGTC | 2 cut(s) | 160, 788 |
| Psp124BI | GAGCTC | 1 cut(s) | 486 |
| Psp6I | CCWGG | 2 cut(s) | 51, 75 |
| PspGI | CCWGG | 2 cut(s) | 51, 75 |
| PspN4I | GGNNCC | 3 cut(s) | 268, 608, 766 |
| PspPI | GGNCC | 2 cut(s) | 259, 653 |
| PstI | CTGCAG | 1 cut(s) | 460 |
| PsuI | RGATCY | 1 cut(s) | 548 |
| RsaI | GTAC | 1 cut(s) | 194 |
| RsaNI | GTAC | 1 cut(s) | 193 |
| RseI | CAYNNNNRTG | 7 cut(s) | 18, 161, 177, 312, 527, 759, 789 |
| SacI | GAGCTC | 1 cut(s) | 486 |
| SaqAI | TTAA | 4 cut(s) | 333, 360, 368, 811 |
| SatI | GCNGC | 1 cut(s) | 126 |
| Sau3AI | GATC | 2 cut(s) | 390, 548 |
| Sau96I | GGNCC | 2 cut(s) | 259, 653 |
| SchI | GAGTC | 2 cut(s) | 160, 788 |
| ScrFI | CCNGG | 2 cut(s) | 53, 77 |
| SduI | GDGCHC | 1 cut(s) | 486 |
| SfaNI | GCATC | 1 cut(s) | 388 |
| SfcI | CTRYAG | 1 cut(s) | 456 |
| SfoI | GGCGCC | 2 cut(s) | 608, 766 |
| SinI | GGWCC | 2 cut(s) | 259, 653 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 18, 161, 177, 312, 527, 759, 789 |
| SmlI | CTYRAG | 3 cut(s) | 35, 65, 102 |
| SmoI | CTYRAG | 3 cut(s) | 35, 65, 102 |
| Sse9I | AATT | 4 cut(s) | 374, 444, 541, 580 |
| SsiI | CCGC | 1 cut(s) | 25 |
| SspDI | GGCGCC | 2 cut(s) | 606, 764 |
| SspMI | CTAG | 2 cut(s) | 72, 239 |
| SstI | GAGCTC | 1 cut(s) | 486 |
| StyD4I | CCNGG | 2 cut(s) | 51, 75 |
| StyI | CCWWGG | 2 cut(s) | 262, 552 |
| TaiI | ACGT | 2 cut(s) | 84, 649 |
| TaqI | TCGA | 2 cut(s) | 442, 545 |
| TasI | AATT | 4 cut(s) | 374, 444, 541, 580 |
| TfiI | GAWTC | 5 cut(s) | 31, 48, 61, 182, 575 |
| Tru1I | TTAA | 4 cut(s) | 333, 360, 368, 811 |
| Tru9I | TTAA | 4 cut(s) | 333, 360, 368, 811 |
| TseI | GCWGC | 1 cut(s) | 125 |
| TspDTI | ATGAA | 2 cut(s) | 218, 467 |
| VpaK11BI | GGWCC | 2 cut(s) | 259, 653 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 600 |
| XapI | RAATTY | 1 cut(s) | 374 |
| XmnI | GAANNNNTTC | 1 cut(s) | 351 |
| XspI | CTAG | 2 cut(s) | 72, 239 |