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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 444 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 605 |
| AccII | CGCG | 1 cut(s) | 429 |
| AciI | CCGC | 3 cut(s) | 121, 514, 734 |
| AclI | AACGTT | 1 cut(s) | 72 |
| AclWI | GGATC | 1 cut(s) | 311 |
| AcoI | YGGCCR | 1 cut(s) | 579 |
| AcsI | RAATTY | 1 cut(s) | 632 |
| AdeI | CACNNNGTG | 1 cut(s) | 774 |
| AfaI | GTAC | 1 cut(s) | 152 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 440, 605 |
| AgsI | TTSAA | 3 cut(s) | 136, 176, 630 |
| AluBI | AGCT | 4 cut(s) | 322, 332, 715, 766 |
| AluI | AGCT | 4 cut(s) | 322, 332, 715, 766 |
| Alw21I | GWGCWC | 3 cut(s) | 324, 659, 717 |
| Alw26I | GTCTC | 2 cut(s) | 256, 379 |
| AlwI | GGATC | 1 cut(s) | 311 |
| AoxI | GGCC | 1 cut(s) | 579 |
| ApoI | RAATTY | 1 cut(s) | 632 |
| AseI | ATTAAT | 1 cut(s) | 336 |
| AspLEI | GCGC | 1 cut(s) | 431 |
| AspS9I | GGNCC | 1 cut(s) | 482 |
| AsuHPI | GGTGA | 2 cut(s) | 604, 723 |
| AvaII | GGWCC | 1 cut(s) | 482 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 1 cut(s) | 447 |
| BalI | TGGCCA | 1 cut(s) | 581 |
| BanI | GGYRCC | 1 cut(s) | 444 |
| BanII | GRGCYC | 2 cut(s) | 324, 717 |
| BauI | CACGAG | 1 cut(s) | 716 |
| BbsI | GAAGAC | 1 cut(s) | 236 |
| Bbv12I | GWGCWC | 3 cut(s) | 324, 659, 717 |
| BccI | CCATC | 4 cut(s) | 102, 256, 620, 790 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 434, 468 |
| BcoDI | GTCTC | 2 cut(s) | 256, 379 |
| BfaI | CTAG | 3 cut(s) | 98, 468, 802 |
| Bme18I | GGWCC | 1 cut(s) | 482 |
| BmgT120I | GGNCC | 1 cut(s) | 482 |
| BmiI | GGNNCC | 3 cut(s) | 446, 536, 610 |
| BmsI | GCATC | 1 cut(s) | 202 |
| BpiI | GAAGAC | 1 cut(s) | 236 |
| Bsa29I | ATCGAT | 1 cut(s) | 285 |
| BsaI | GGTCTC | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 1 cut(s) | 390 |
| BsaWI | WCCGGW | 1 cut(s) | 688 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 440, 605 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| BseCI | ATCGAT | 1 cut(s) | 285 |
| BseDI | CCNNGG | 1 cut(s) | 390 |
| BseGI | GGATG | 2 cut(s) | 360, 612 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 440, 605 |
| BseMII | CTCAG | 1 cut(s) | 426 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 447 |
| Bsh1236I | CGCG | 1 cut(s) | 429 |
| BshFI | GGCC | 1 cut(s) | 581 |
| BshNI | GGYRCC | 1 cut(s) | 444 |
| BshVI | ATCGAT | 1 cut(s) | 285 |
| BsiHKAI | GWGCWC | 3 cut(s) | 324, 659, 717 |
| BsiSI | CCGG | 1 cut(s) | 689 |
| BslFI | GGGAC | 1 cut(s) | 485 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 440, 605 |
| BsmAI | GTCTC | 2 cut(s) | 256, 379 |
| BsmBI | CGTCTC | 1 cut(s) | 256 |
| BsmFI | GGGAC | 1 cut(s) | 485 |
| BsnI | GGCC | 1 cut(s) | 581 |
| Bso31I | GGTCTC | 1 cut(s) | 379 |
| Bsp1286I | GDGCHC | 4 cut(s) | 324, 447, 659, 717 |
| Bsp1407I | TGTACA | 1 cut(s) | 150 |
| Bsp143I | GATC | 4 cut(s) | 204, 303, 451, 786 |
| BspACI | CCGC | 3 cut(s) | 121, 514, 734 |
| BspANI | GGCC | 1 cut(s) | 581 |
| BspCNI | CTCAG | 1 cut(s) | 427 |
| BspDI | ATCGAT | 1 cut(s) | 285 |
| BspFNI | CGCG | 1 cut(s) | 429 |
| BspHI | TCATGA | 1 cut(s) | 316 |
| BspLI | GGNNCC | 3 cut(s) | 446, 536, 610 |
| BspPI | GGATC | 1 cut(s) | 311 |
| BspT107I | GGYRCC | 1 cut(s) | 444 |
| BspTNI | GGTCTC | 1 cut(s) | 379 |
| BsrGI | TGTACA | 1 cut(s) | 150 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 390 |
| BssMI | GATC | 4 cut(s) | 204, 303, 451, 786 |
| BssSI | CACGAG | 1 cut(s) | 716 |
| Bst2BI | CACGAG | 1 cut(s) | 716 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 377 |
| Bst6I | CTCTTC | 1 cut(s) | 550 |
| BstAUI | TGTACA | 1 cut(s) | 150 |
| BstDEI | CTNAG | 2 cut(s) | 270, 435 |
| BstDSI | CCRYGG | 1 cut(s) | 390 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 2 cut(s) | 360, 612 |
| BstFNI | CGCG | 1 cut(s) | 429 |
| BstHHI | GCGC | 1 cut(s) | 431 |
| BstKTI | GATC | 4 cut(s) | 207, 306, 454, 789 |
| BstMAI | GTCTC | 2 cut(s) | 256, 379 |
| BstMBI | GATC | 4 cut(s) | 204, 303, 451, 786 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 742, 763 |
| BstSLI | GKGCMC | 1 cut(s) | 447 |
| BstUI | CGCG | 1 cut(s) | 429 |
| BstV2I | GAAGAC | 1 cut(s) | 236 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 589 |
| Bsu15I | ATCGAT | 1 cut(s) | 285 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuRI | GGCC | 1 cut(s) | 581 |
| BsuTUI | ATCGAT | 1 cut(s) | 285 |
| BtgI | CCRYGG | 1 cut(s) | 390 |
| BtgZI | GCGATG | 1 cut(s) | 230 |
| BtsCI | GGATG | 2 cut(s) | 360, 612 |
| CciI | TCATGA | 1 cut(s) | 316 |
| CfoI | GCGC | 1 cut(s) | 431 |
| Cfr13I | GGNCC | 1 cut(s) | 482 |
| ClaI | ATCGAT | 1 cut(s) | 285 |
| CseI | GACGC | 1 cut(s) | 631 |
| Csp6I | GTAC | 1 cut(s) | 151 |
| CviAII | CATG | 4 cut(s) | 317, 353, 531, 583 |
| CviJI | RGCY | 8 cut(s) | 48, 117, 322, 332, 581, 611, 715, 766 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 117, 322, 332, 581, 611, 715, 766 |
| CviQI | GTAC | 1 cut(s) | 151 |
| DdeI | CTNAG | 2 cut(s) | 270, 435 |
| DpnI | GATC | 4 cut(s) | 206, 305, 453, 788 |
| DpnII | GATC | 4 cut(s) | 204, 303, 451, 786 |
| DraIII | CACNNNGTG | 1 cut(s) | 774 |
| EaeI | YGGCCR | 1 cut(s) | 579 |
| Eam1104I | CTCTTC | 1 cut(s) | 550 |
| EarI | CTCTTC | 1 cut(s) | 550 |
| Ecl136II | GAGCTC | 2 cut(s) | 322, 715 |
| Eco24I | GRGCYC | 2 cut(s) | 324, 717 |
| Eco31I | GGTCTC | 1 cut(s) | 379 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 482 |
| Eco53kI | GAGCTC | 2 cut(s) | 322, 715 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| EcoICRI | GAGCTC | 2 cut(s) | 322, 715 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 438 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 2 cut(s) | 324, 717 |
| Esp3I | CGTCTC | 1 cut(s) | 256 |
| FaeI | CATG | 4 cut(s) | 320, 356, 534, 586 |
| FaqI | GGGAC | 1 cut(s) | 485 |
| FatI | CATG | 4 cut(s) | 316, 352, 530, 582 |
| FokI | GGATG | 2 cut(s) | 347, 599 |
| FriOI | GRGCYC | 2 cut(s) | 324, 717 |
| FspBI | CTAG | 3 cut(s) | 98, 468, 802 |
| GlaI | GCGC | 1 cut(s) | 430 |
| HaeIII | GGCC | 1 cut(s) | 581 |
| HapII | CCGG | 1 cut(s) | 689 |
| HgaI | GACGC | 1 cut(s) | 631 |
| HhaI | GCGC | 1 cut(s) | 431 |
| Hin1II | CATG | 4 cut(s) | 320, 356, 534, 586 |
| Hin6I | GCGC | 1 cut(s) | 429 |
| HinP1I | GCGC | 1 cut(s) | 429 |
| HincII | GTYRAC | 1 cut(s) | 548 |
| HindII | GTYRAC | 1 cut(s) | 548 |
| HinfI | GANTC | 5 cut(s) | 80, 176, 232, 282, 413 |
| HpaII | CCGG | 1 cut(s) | 689 |
| HphI | GGTGA | 2 cut(s) | 604, 723 |
| Hpy166II | GTNNAC | 2 cut(s) | 151, 548 |
| Hpy188I | TCNGA | 1 cut(s) | 412 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 77, 317, 384, 674, 718, 790 |
| Hpy8I | GTNNAC | 2 cut(s) | 151, 548 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 377 |
| HpyCH4IV | ACGT | 2 cut(s) | 72, 550 |
| HpyCH4V | TGCA | 1 cut(s) | 257 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 742, 763 |
| HpyF3I | CTNAG | 2 cut(s) | 270, 435 |
| HpySE526I | ACGT | 2 cut(s) | 72, 550 |
| Hsp92II | CATG | 4 cut(s) | 320, 356, 534, 586 |
| HspAI | GCGC | 1 cut(s) | 429 |
| Kzo9I | GATC | 4 cut(s) | 204, 303, 451, 786 |
| LmnI | GCTCC | 3 cut(s) | 34, 329, 608 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 36, 447, 465, 702 |
| LweI | GCATC | 1 cut(s) | 202 |
| MaeI | CTAG | 3 cut(s) | 98, 468, 802 |
| MaeII | ACGT | 2 cut(s) | 72, 550 |
| MaeIII | GTNAC | 5 cut(s) | 5, 77, 289, 592, 729 |
| MalI | GATC | 4 cut(s) | 206, 305, 453, 788 |
| MboI | GATC | 4 cut(s) | 204, 303, 451, 786 |
| MboII | GAAGA | 5 cut(s) | 241, 382, 567, 733, 796 |
| MhlI | GDGCHC | 4 cut(s) | 324, 447, 659, 717 |
| MlsI | TGGCCA | 1 cut(s) | 581 |
| MluCI | AATT | 7 cut(s) | 17, 188, 379, 418, 475, 632, 725 |
| MluNI | TGGCCA | 1 cut(s) | 581 |
| MlyI | GAGTC | 3 cut(s) | 74, 226, 422 |
| MnlI | CCTC | 5 cut(s) | 128, 430, 434, 555, 559 |
| Mox20I | TGGCCA | 1 cut(s) | 581 |
| MscI | TGGCCA | 1 cut(s) | 581 |
| MseI | TTAA | 2 cut(s) | 182, 336 |
| MslI | CAYNNNNRTG | 4 cut(s) | 365, 587, 617, 662 |
| Msp20I | TGGCCA | 1 cut(s) | 581 |
| MspI | CCGG | 1 cut(s) | 689 |
| MvnI | CGCG | 1 cut(s) | 429 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 742, 763 |
| NdeII | GATC | 4 cut(s) | 204, 303, 451, 786 |
| NlaIII | CATG | 4 cut(s) | 320, 356, 534, 586 |
| NlaIV | GGNNCC | 3 cut(s) | 446, 536, 610 |
| NmuCI | GTSAC | 3 cut(s) | 77, 592, 729 |
| PagI | TCATGA | 1 cut(s) | 316 |
| PfeI | GAWTC | 2 cut(s) | 176, 282 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 605 |
| PleI | GAGTC | 3 cut(s) | 74, 226, 421 |
| PpsI | GAGTC | 3 cut(s) | 74, 226, 421 |
| PshBI | ATTAAT | 1 cut(s) | 336 |
| Psp124BI | GAGCTC | 2 cut(s) | 324, 717 |
| Psp1406I | AACGTT | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 3 cut(s) | 446, 536, 610 |
| PspPI | GGNCC | 1 cut(s) | 482 |
| RsaI | GTAC | 1 cut(s) | 152 |
| RsaNI | GTAC | 1 cut(s) | 151 |
| RseI | CAYNNNNRTG | 4 cut(s) | 365, 587, 617, 662 |
| SacI | GAGCTC | 2 cut(s) | 324, 717 |
| SaqAI | TTAA | 2 cut(s) | 182, 336 |
| Sau3AI | GATC | 4 cut(s) | 204, 303, 451, 786 |
| Sau96I | GGNCC | 1 cut(s) | 482 |
| SchI | GAGTC | 3 cut(s) | 74, 226, 422 |
| SduI | GDGCHC | 4 cut(s) | 324, 447, 659, 717 |
| SfaNI | GCATC | 1 cut(s) | 202 |
| SinI | GGWCC | 1 cut(s) | 482 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 365, 587, 617, 662 |
| Sse9I | AATT | 7 cut(s) | 17, 188, 379, 418, 475, 632, 725 |
| SsiI | CCGC | 3 cut(s) | 121, 514, 734 |
| SspMI | CTAG | 3 cut(s) | 98, 468, 802 |
| SstI | GAGCTC | 2 cut(s) | 324, 717 |
| TaaI | ACNGT | 2 cut(s) | 295, 377 |
| TaiI | ACGT | 2 cut(s) | 75, 553 |
| TaqI | TCGA | 5 cut(s) | 158, 280, 285, 383, 454 |
| TasI | AATT | 7 cut(s) | 17, 188, 379, 418, 475, 632, 725 |
| TatI | WGTACW | 1 cut(s) | 150 |
| TfiI | GAWTC | 2 cut(s) | 176, 282 |
| Tru1I | TTAA | 2 cut(s) | 182, 336 |
| Tru9I | TTAA | 2 cut(s) | 182, 336 |
| TseFI | GTSAC | 3 cut(s) | 77, 592, 729 |
| Tsp45I | GTSAC | 3 cut(s) | 77, 592, 729 |
| TspDTI | ATGAA | 2 cut(s) | 200, 305 |
| TspGWI | ACGGA | 1 cut(s) | 316 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 482 |
| VspI | ATTAAT | 1 cut(s) | 336 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 438 |
| XapI | RAATTY | 1 cut(s) | 632 |
| XspI | CTAG | 3 cut(s) | 98, 468, 802 |