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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1025 |
| AccBSI | CCGCTC | 1 cut(s) | 242 |
| AccII | CGCG | 2 cut(s) | 357, 761 |
| AclI | AACGTT | 2 cut(s) | 834, 906 |
| AclWI | GGATC | 1 cut(s) | 1017 |
| AcoI | YGGCCR | 4 cut(s) | 92, 250, 502, 529 |
| AcuI | CTGAAG | 3 cut(s) | 278, 288, 306 |
| AcyI | GRCGYC | 1 cut(s) | 371 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 69, 90, 117, 403, 488, 607, 784, 1025 |
| AflII | CTTAAG | 1 cut(s) | 632 |
| AgeI | ACCGGT | 1 cut(s) | 417 |
| AgsI | TTSAA | 7 cut(s) | 13, 43, 556, 565, 710, 812, 898 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 375 |
| AjiI | CACGTC | 2 cut(s) | 333, 377 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 668, 700 |
| AluBI | AGCT | 6 cut(s) | 46, 153, 290, 698, 722, 802 |
| AluI | AGCT | 6 cut(s) | 46, 153, 290, 698, 722, 802 |
| Alw21I | GWGCWC | 1 cut(s) | 684 |
| Alw26I | GTCTC | 1 cut(s) | 575 |
| AlwI | GGATC | 1 cut(s) | 1017 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 192, 1025 |
| AoxI | GGCC | 5 cut(s) | 92, 112, 250, 502, 529 |
| ApeKI | GCWGC | 1 cut(s) | 195 |
| AsiGI | ACCGGT | 1 cut(s) | 417 |
| AspLEI | GCGC | 3 cut(s) | 593, 624, 763 |
| AspS9I | GGNCC | 3 cut(s) | 113, 201, 610 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 4 cut(s) | 42, 175, 203, 220 |
| AsuII | TTCGAA | 1 cut(s) | 148 |
| AvaII | GGWCC | 2 cut(s) | 201, 610 |
| BbsI | GAAGAC | 2 cut(s) | 795, 1005 |
| Bbv12I | GWGCWC | 1 cut(s) | 684 |
| BbvI | GCAGC | 1 cut(s) | 207 |
| BccI | CCATC | 4 cut(s) | 635, 665, 864, 968 |
| BciVI | GTATCC | 1 cut(s) | 590 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 1 cut(s) | 575 |
| BfaI | CTAG | 4 cut(s) | 206, 342, 578, 669 |
| BfmI | CTRYAG | 1 cut(s) | 193 |
| BfrI | CTTAAG | 1 cut(s) | 632 |
| BfuI | GTATCC | 1 cut(s) | 590 |
| BisI | GCNGC | 7 cut(s) | 32, 74, 196, 253, 281, 355, 505 |
| BlsI | GCNGC | 7 cut(s) | 33, 75, 197, 254, 282, 356, 506 |
| Bme1390I | CCNGG | 1 cut(s) | 118 |
| Bme18I | GGWCC | 2 cut(s) | 201, 610 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 375 |
| BmgBI | CACGTC | 2 cut(s) | 333, 377 |
| BmgT120I | GGNCC | 3 cut(s) | 113, 201, 610 |
| BmiI | GGNNCC | 5 cut(s) | 115, 203, 218, 238, 611 |
| BmrFI | CCNGG | 1 cut(s) | 118 |
| BmsI | GCATC | 1 cut(s) | 347 |
| BpiI | GAAGAC | 2 cut(s) | 795, 1005 |
| BpmI | CTGGAG | 1 cut(s) | 39 |
| Bpu14I | TTCGAA | 1 cut(s) | 148 |
| BpuEI | CTTGAG | 1 cut(s) | 836 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| BsaBI | GATNNNNATC | 2 cut(s) | 978, 984 |
| BsaHI | GRCGYC | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 1 cut(s) | 116 |
| BsaWI | WCCGGW | 7 cut(s) | 213, 233, 366, 396, 417, 429, 451 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 668, 698 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 69, 90, 117, 403, 488, 607, 784, 1025 |
| Bse118I | RCCGGY | 6 cut(s) | 69, 90, 94, 110, 248, 417 |
| Bse1I | ACTGG | 4 cut(s) | 440, 463, 592, 1030 |
| Bse8I | GATNNNNATC | 2 cut(s) | 978, 984 |
| BseDI | CCNNGG | 1 cut(s) | 116 |
| BseGI | GGATG | 2 cut(s) | 549, 657 |
| BseJI | GATNNNNATC | 2 cut(s) | 978, 984 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 69, 90, 117, 403, 488, 607, 784, 1025 |
| BseMII | CTCAG | 1 cut(s) | 400 |
| BseNI | ACTGG | 4 cut(s) | 440, 463, 592, 1030 |
| BseX3I | CGGCCG | 3 cut(s) | 92, 250, 502 |
| BseXI | GCAGC | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 2 cut(s) | 357, 761 |
| Bsh1285I | CGRYCG | 3 cut(s) | 95, 253, 505 |
| BshFI | GGCC | 5 cut(s) | 94, 114, 252, 504, 531 |
| BshTI | ACCGGT | 1 cut(s) | 417 |
| BsiEI | CGRYCG | 3 cut(s) | 95, 253, 505 |
| BsiHKAI | GWGCWC | 1 cut(s) | 684 |
| BslFI | GGGAC | 1 cut(s) | 66 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 69, 90, 117, 403, 488, 607, 784, 1025 |
| BsmAI | GTCTC | 1 cut(s) | 575 |
| BsmFI | GGGAC | 1 cut(s) | 66 |
| BsmI | GAATGC | 1 cut(s) | 4 |
| BsnI | GGCC | 5 cut(s) | 94, 114, 252, 504, 531 |
| Bsp119I | TTCGAA | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 684 |
| Bsp143I | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| BspANI | GGCC | 5 cut(s) | 94, 114, 252, 504, 531 |
| BspCNI | CTCAG | 1 cut(s) | 399 |
| BspFNI | CGCG | 2 cut(s) | 357, 761 |
| BspHI | TCATGA | 1 cut(s) | 738 |
| BspLI | GGNNCC | 5 cut(s) | 115, 203, 218, 238, 611 |
| BspMAI | CTGCAG | 1 cut(s) | 197 |
| BspPI | GGATC | 1 cut(s) | 1017 |
| BspT104I | TTCGAA | 1 cut(s) | 148 |
| BspTI | CTTAAG | 1 cut(s) | 632 |
| BsrBI | CCGCTC | 1 cut(s) | 242 |
| BsrFI | RCCGGY | 6 cut(s) | 69, 90, 94, 110, 248, 417 |
| BsrI | ACTGG | 4 cut(s) | 440, 463, 592, 1030 |
| BssAI | RCCGGY | 6 cut(s) | 69, 90, 94, 110, 248, 417 |
| BssECI | CCNNGG | 1 cut(s) | 116 |
| BssMI | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| BssNI | GRCGYC | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 1 cut(s) | 406 |
| BstACI | GRCGYC | 1 cut(s) | 371 |
| BstAFI | CTTAAG | 1 cut(s) | 632 |
| BstBI | TTCGAA | 1 cut(s) | 148 |
| BstC8I | GCNNGC | 3 cut(s) | 96, 327, 696 |
| BstDEI | CTNAG | 2 cut(s) | 386, 989 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 782 |
| BstF5I | GGATG | 2 cut(s) | 549, 657 |
| BstFNI | CGCG | 2 cut(s) | 357, 761 |
| BstHHI | GCGC | 3 cut(s) | 593, 624, 763 |
| BstKTI | GATC | 5 cut(s) | 211, 970, 982, 988, 1012 |
| BstMAI | GTCTC | 1 cut(s) | 575 |
| BstMBI | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| BstMCI | CGRYCG | 3 cut(s) | 95, 253, 505 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 335, 379, 710, 719, 944 |
| BstSCI | CCNGG | 1 cut(s) | 116 |
| BstSFI | CTRYAG | 1 cut(s) | 193 |
| BstUI | CGCG | 2 cut(s) | 357, 761 |
| BstV1I | GCAGC | 1 cut(s) | 207 |
| BstV2I | GAAGAC | 2 cut(s) | 795, 1005 |
| BstZI | CGGCCG | 3 cut(s) | 92, 250, 502 |
| BsuI | GTATCC | 1 cut(s) | 590 |
| BsuRI | GGCC | 5 cut(s) | 94, 114, 252, 504, 531 |
| BtgZI | GCGATG | 1 cut(s) | 883 |
| BtrI | CACGTC | 2 cut(s) | 333, 377 |
| BtsCI | GGATG | 2 cut(s) | 549, 657 |
| Cac8I | GCNNGC | 3 cut(s) | 96, 327, 696 |
| CaiI | CAGNNNCTG | 2 cut(s) | 192, 1025 |
| CciI | TCATGA | 1 cut(s) | 738 |
| CfoI | GCGC | 3 cut(s) | 593, 624, 763 |
| Cfr10I | RCCGGY | 6 cut(s) | 69, 90, 94, 110, 248, 417 |
| Cfr13I | GGNCC | 3 cut(s) | 113, 201, 610 |
| CseI | GACGC | 3 cut(s) | 346, 379, 767 |
| CspAI | ACCGGT | 1 cut(s) | 417 |
| CviAII | CATG | 3 cut(s) | 739, 751, 955 |
| DdeI | CTNAG | 2 cut(s) | 386, 989 |
| DpnI | GATC | 5 cut(s) | 210, 969, 981, 987, 1011 |
| DpnII | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| DriI | GACNNNNNGTC | 1 cut(s) | 375 |
| EaeI | YGGCCR | 4 cut(s) | 92, 250, 502, 529 |
| EagI | CGGCCG | 3 cut(s) | 92, 250, 502 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 375 |
| EciI | GGCGGA | 1 cut(s) | 18 |
| EclXI | CGGCCG | 3 cut(s) | 92, 250, 502 |
| Eco32I | GATATC | 1 cut(s) | 131 |
| Eco47I | GGWCC | 2 cut(s) | 201, 610 |
| Eco52I | CGGCCG | 3 cut(s) | 92, 250, 502 |
| Eco57I | CTGAAG | 3 cut(s) | 278, 288, 306 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 782 |
| EcoRV | GATATC | 1 cut(s) | 131 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 3 cut(s) | 742, 754, 958 |
| FaiI | YATR | 8 cut(s) | 603, 731, 740, 752, 805, 876, 919, 956 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 551, 583 |
| FaqI | GGGAC | 1 cut(s) | 66 |
| FatI | CATG | 3 cut(s) | 738, 750, 954 |
| Fnu4HI | GCNGC | 7 cut(s) | 32, 74, 196, 253, 281, 355, 505 |
| FokI | GGATG | 2 cut(s) | 556, 644 |
| Fsp4HI | GCNGC | 7 cut(s) | 32, 74, 196, 253, 281, 355, 505 |
| FspBI | CTAG | 4 cut(s) | 206, 342, 578, 669 |
| GlaI | GCGC | 3 cut(s) | 592, 623, 762 |
| GluI | GCNGC | 7 cut(s) | 32, 74, 196, 253, 281, 355, 505 |
| GsuI | CTGGAG | 1 cut(s) | 39 |
| HaeIII | GGCC | 5 cut(s) | 94, 114, 252, 504, 531 |
| HgaI | GACGC | 3 cut(s) | 346, 379, 767 |
| HhaI | GCGC | 3 cut(s) | 593, 624, 763 |
| Hin1I | GRCGYC | 1 cut(s) | 371 |
| Hin1II | CATG | 3 cut(s) | 742, 754, 958 |
| Hin6I | GCGC | 3 cut(s) | 591, 622, 761 |
| HinP1I | GCGC | 3 cut(s) | 591, 622, 761 |
| HincII | GTYRAC | 9 cut(s) | 310, 392, 402, 413, 423, 435, 445, 457, 468 |
| HindII | GTYRAC | 9 cut(s) | 310, 392, 402, 413, 423, 435, 445, 457, 468 |
| HindIII | AAGCTT | 2 cut(s) | 151, 288 |
| HinfI | GANTC | 2 cut(s) | 653, 842 |
| HphI | GGTGA | 4 cut(s) | 42, 175, 203, 220 |
| Hpy166II | GTNNAC | 9 cut(s) | 310, 392, 402, 413, 423, 435, 445, 457, 468 |
| Hpy188I | TCNGA | 2 cut(s) | 614, 675 |
| Hpy188III | TCNNGA | 9 cut(s) | 56, 650, 739, 839, 854, 932, 971, 983, 1013 |
| Hpy8I | GTNNAC | 9 cut(s) | 310, 392, 402, 413, 423, 435, 445, 457, 468 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 1 cut(s) | 406 |
| HpyCH4IV | ACGT | 5 cut(s) | 332, 376, 678, 834, 906 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 195 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 335, 379, 710, 719, 944 |
| HpyF3I | CTNAG | 2 cut(s) | 386, 989 |
| HpySE526I | ACGT | 5 cut(s) | 332, 376, 678, 834, 906 |
| Hsp92I | GRCGYC | 1 cut(s) | 371 |
| Hsp92II | CATG | 3 cut(s) | 742, 754, 958 |
| HspAI | GCGC | 3 cut(s) | 591, 622, 761 |
| KroI | GCCGGC | 1 cut(s) | 94 |
| KroNI | GCCGGC | 1 cut(s) | 96 |
| Kzo9I | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| LmnI | GCTCC | 3 cut(s) | 216, 247, 768 |
| Lsp1109I | GCAGC | 1 cut(s) | 207 |
| LweI | GCATC | 1 cut(s) | 347 |
| MaeI | CTAG | 4 cut(s) | 206, 342, 578, 669 |
| MaeII | ACGT | 5 cut(s) | 332, 376, 678, 834, 906 |
| MaeIII | GTNAC | 2 cut(s) | 548, 839 |
| MalI | GATC | 5 cut(s) | 210, 969, 981, 987, 1011 |
| MbiI | CCGCTC | 1 cut(s) | 242 |
| MboI | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| MboII | GAAGA | 3 cut(s) | 800, 977, 1010 |
| MhlI | GDGCHC | 1 cut(s) | 684 |
| MluCI | AATT | 2 cut(s) | 732, 949 |
| MlyI | GAGTC | 1 cut(s) | 836 |
| MmeI | TCCRAC | 1 cut(s) | 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 94 |
| MseI | TTAA | 4 cut(s) | 539, 633, 690, 1039 |
| MslI | CAYNNNNRTG | 1 cut(s) | 753 |
| MspCI | CTTAAG | 1 cut(s) | 632 |
| MspR9I | CCNGG | 1 cut(s) | 118 |
| Mva1269I | GAATGC | 1 cut(s) | 4 |
| MvnI | CGCG | 2 cut(s) | 357, 761 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 335, 379, 710, 719, 944 |
| NaeI | GCCGGC | 1 cut(s) | 96 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NdeII | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| NgoMIV | GCCGGC | 1 cut(s) | 94 |
| NlaIII | CATG | 3 cut(s) | 742, 754, 958 |
| NlaIV | GGNNCC | 5 cut(s) | 115, 203, 218, 238, 611 |
| NmuCI | GTSAC | 1 cut(s) | 839 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspV | TTCGAA | 1 cut(s) | 148 |
| PagI | TCATGA | 1 cut(s) | 738 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 329 |
| PctI | GAATGC | 1 cut(s) | 4 |
| PdiI | GCCGGC | 1 cut(s) | 96 |
| PfeI | GAWTC | 1 cut(s) | 653 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1025 |
| PinAI | ACCGGT | 1 cut(s) | 417 |
| PkrI | GCNGC | 7 cut(s) | 33, 75, 197, 254, 282, 356, 506 |
| PleI | GAGTC | 1 cut(s) | 836 |
| PpsI | GAGTC | 1 cut(s) | 836 |
| Psp1406I | AACGTT | 2 cut(s) | 834, 906 |
| PspN4I | GGNNCC | 5 cut(s) | 115, 203, 218, 238, 611 |
| PspPI | GGNCC | 3 cut(s) | 113, 201, 610 |
| PstI | CTGCAG | 1 cut(s) | 197 |
| PstNI | CAGNNNCTG | 2 cut(s) | 192, 1025 |
| RseI | CAYNNNNRTG | 1 cut(s) | 753 |
| SaqAI | TTAA | 4 cut(s) | 539, 633, 690, 1039 |
| SatI | GCNGC | 7 cut(s) | 32, 74, 196, 253, 281, 355, 505 |
| Sau3AI | GATC | 5 cut(s) | 208, 967, 979, 985, 1009 |
| Sau96I | GGNCC | 3 cut(s) | 113, 201, 610 |
| SchI | GAGTC | 1 cut(s) | 836 |
| ScrFI | CCNGG | 1 cut(s) | 118 |
| SduI | GDGCHC | 1 cut(s) | 684 |
| SfaNI | GCATC | 1 cut(s) | 347 |
| SfcI | CTRYAG | 1 cut(s) | 193 |
| SfuI | TTCGAA | 1 cut(s) | 148 |
| SinI | GGWCC | 2 cut(s) | 201, 610 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 753 |
| SmlI | CTYRAG | 2 cut(s) | 632, 815 |
| SmoI | CTYRAG | 2 cut(s) | 632, 815 |
| Sse9I | AATT | 2 cut(s) | 732, 949 |
| SspMI | CTAG | 4 cut(s) | 206, 342, 578, 669 |
| StyD4I | CCNGG | 1 cut(s) | 116 |
| TaaI | ACNGT | 1 cut(s) | 406 |
| TaiI | ACGT | 5 cut(s) | 335, 379, 681, 837, 909 |
| TaqI | TCGA | 2 cut(s) | 148, 984 |
| TasI | AATT | 2 cut(s) | 732, 949 |
| TauI | GCSGC | 6 cut(s) | 34, 76, 255, 283, 357, 507 |
| TfiI | GAWTC | 1 cut(s) | 653 |
| Tru1I | TTAA | 4 cut(s) | 539, 633, 690, 1039 |
| Tru9I | TTAA | 4 cut(s) | 539, 633, 690, 1039 |
| TseFI | GTSAC | 1 cut(s) | 839 |
| TseI | GCWGC | 1 cut(s) | 195 |
| Tsp45I | GTSAC | 1 cut(s) | 839 |
| TspDTI | ATGAA | 2 cut(s) | 767, 786 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1025 |
| Vha464I | CTTAAG | 1 cut(s) | 632 |
| VpaK11BI | GGWCC | 2 cut(s) | 201, 610 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 782 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 801 |
| XspI | CTAG | 4 cut(s) | 206, 342, 578, 669 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |