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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AciI | CCGC | 2 cut(s) | 133, 171 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AgsI | TTSAA | 1 cut(s) | 239 |
| AluBI | AGCT | 3 cut(s) | 129, 334, 344 |
| AluI | AGCT | 3 cut(s) | 129, 334, 344 |
| Alw21I | GWGCWC | 1 cut(s) | 336 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| AlwI | GGATC | 1 cut(s) | 323 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| AxyI | CCTNAGG | 1 cut(s) | 479 |
| BaeGI | GKGCMC | 1 cut(s) | 445 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BbsI | GAAGAC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 336 |
| BbvI | GCAGC | 1 cut(s) | 185 |
| BccI | CCATC | 1 cut(s) | 268 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BfmI | CTRYAG | 1 cut(s) | 306 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| BisI | GCNGC | 1 cut(s) | 174 |
| BlsI | GCNGC | 1 cut(s) | 175 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 1 cut(s) | 458 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpiI | GAAGAC | 1 cut(s) | 45 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 152, 182 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse21I | CCTNAGG | 1 cut(s) | 479 |
| BseGI | GGATG | 3 cut(s) | 10, 84, 372 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseSI | GKGCMC | 1 cut(s) | 445 |
| BseXI | GCAGC | 1 cut(s) | 185 |
| BsiHKAI | GWGCWC | 1 cut(s) | 336 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp1286I | GDGCHC | 2 cut(s) | 336, 445 |
| Bsp143I | GATC | 2 cut(s) | 216, 315 |
| BspACI | CCGC | 2 cut(s) | 133, 171 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 1 cut(s) | 458 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssMI | GATC | 2 cut(s) | 216, 315 |
| BstDEI | CTNAG | 4 cut(s) | 282, 447, 479, 522 |
| BstF5I | GGATG | 3 cut(s) | 10, 84, 372 |
| BstKTI | GATC | 2 cut(s) | 219, 318 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 2 cut(s) | 216, 315 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstSFI | CTRYAG | 1 cut(s) | 306 |
| BstSLI | GKGCMC | 1 cut(s) | 445 |
| BstV1I | GCAGC | 1 cut(s) | 185 |
| BstV2I | GAAGAC | 1 cut(s) | 45 |
| Bsu36I | CCTNAGG | 1 cut(s) | 479 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 3 cut(s) | 10, 84, 372 |
| BtsIMutI | CAGTG | 1 cut(s) | 354 |
| CciI | TCATGA | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 2 cut(s) | 329, 365 |
| CviJI | RGCY | 6 cut(s) | 52, 129, 244, 334, 344, 457 |
| CviKI_1 | RGCY | 6 cut(s) | 52, 129, 244, 334, 344, 457 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 4 cut(s) | 282, 447, 479, 522 |
| DpnI | GATC | 2 cut(s) | 218, 317 |
| DpnII | GATC | 2 cut(s) | 216, 315 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| Eco81I | CCTNAGG | 1 cut(s) | 479 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| FaeI | CATG | 2 cut(s) | 332, 368 |
| FatI | CATG | 2 cut(s) | 328, 364 |
| Fnu4HI | GCNGC | 1 cut(s) | 174 |
| FokI | GGATG | 3 cut(s) | 17, 71, 359 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 1 cut(s) | 174 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GluI | GCNGC | 1 cut(s) | 174 |
| Hin1II | CATG | 2 cut(s) | 332, 368 |
| HinfI | GANTC | 1 cut(s) | 8 |
| Hpy188I | TCNGA | 1 cut(s) | 423 |
| Hpy188III | TCNNGA | 4 cut(s) | 104, 158, 329, 492 |
| HpyAV | CCTTC | 4 cut(s) | 42, 265, 271, 447 |
| HpyCH4IV | ACGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 1 cut(s) | 269 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| HpyF3I | CTNAG | 4 cut(s) | 282, 447, 479, 522 |
| HpySE526I | ACGT | 1 cut(s) | 496 |
| Hsp92II | CATG | 2 cut(s) | 332, 368 |
| Kzo9I | GATC | 2 cut(s) | 216, 315 |
| LmnI | GCTCC | 2 cut(s) | 341, 462 |
| LpnPI | CCDG | 6 cut(s) | 29, 58, 117, 294, 477, 486 |
| Lsp1109I | GCAGC | 1 cut(s) | 185 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MaeII | ACGT | 1 cut(s) | 496 |
| MaeIII | GTNAC | 2 cut(s) | 89, 352 |
| MalI | GATC | 2 cut(s) | 218, 317 |
| MboI | GATC | 2 cut(s) | 216, 315 |
| MboII | GAAGA | 3 cut(s) | 50, 80, 394 |
| MhlI | GDGCHC | 2 cut(s) | 336, 445 |
| MluCI | AATT | 3 cut(s) | 200, 391, 430 |
| MnlI | CCTC | 1 cut(s) | 255 |
| MseI | TTAA | 3 cut(s) | 147, 186, 194 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NdeII | GATC | 2 cut(s) | 216, 315 |
| NlaIII | CATG | 2 cut(s) | 332, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 458 |
| NmuCI | GTSAC | 2 cut(s) | 89, 352 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PfeI | GAWTC | 1 cut(s) | 8 |
| PkrI | GCNGC | 1 cut(s) | 175 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| PspN4I | GGNNCC | 1 cut(s) | 458 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SaqAI | TTAA | 3 cut(s) | 147, 186, 194 |
| SatI | GCNGC | 1 cut(s) | 174 |
| Sau3AI | GATC | 2 cut(s) | 216, 315 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SduI | GDGCHC | 2 cut(s) | 336, 445 |
| SetI | ASST | 8 cut(s) | 111, 131, 257, 326, 336, 346, 480, 499 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 306 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| Sse9I | AATT | 3 cut(s) | 200, 391, 430 |
| SsiI | CCGC | 2 cut(s) | 133, 171 |
| SspMI | CTAG | 1 cut(s) | 110 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| TaiI | ACGT | 1 cut(s) | 499 |
| TaqI | TCGA | 2 cut(s) | 66, 292 |
| TasI | AATT | 3 cut(s) | 200, 391, 430 |
| TfiI | GAWTC | 1 cut(s) | 8 |
| Tru1I | TTAA | 3 cut(s) | 147, 186, 194 |
| Tru9I | TTAA | 3 cut(s) | 147, 186, 194 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 2 cut(s) | 89, 352 |
| TseI | GCWGC | 1 cut(s) | 173 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 352 |
| TspDTI | ATGAA | 3 cut(s) | 44, 317, 362 |
| TspGWI | ACGGA | 2 cut(s) | 77, 328 |
| TspRI | CASTG | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XspI | CTAG | 1 cut(s) | 110 |